Glyma13g32950 - SoyBase

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Report for Sequence Feature Glyma13g32950

Feature Type:	gene_model
Chromosome:	Gm13
Start:	34955282
stop:	34958713
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g32950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38040	AT	Annotation by Michelle Graham. TAIR10: Exostosin family protein \| chr4:17867501-17869131 FORWARD LENGTH=425	SoyBase	E_val: 3.00E-157	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
KOG1021	KOG	Acetylglucosaminyltransferase EXT1/exostosin 1	JGI		ISS
PTHR11062	Panther	EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED	JGI		ISS
PTHR11062:SF31	Panther		JGI		ISS
PF03016	PFAM	Exostosin family	JGI		ISS
UniRef100_B9SA61	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SA61_RICCO	SoyBase	E_val: 2.00E-162	ISS
UniRef100_UPI000233B65A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B65A related cluster n=1 Tax=unknown RepID=UPI000233B65A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g32950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g32950

Paralog	Evidence	Comments
Glyma15g06366	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g32950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g256200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g32950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g32950

Limit To All Plant Sequences

>Glyma13g32950.2   sequence type=transcript   gene model=Glyma13g32950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCTCCTCCGGCGTCTTCCACTCTCCGGAGGAGGCTTTCCGCTTGGACTACCAGAAGATGGAGGAGGAGTTCAAGGTCTTCGTCTATCCCGACGGAGATCCCGAAACCTATTTCCACACGCCGAGGAAACTCACCGGAAAATACGCCAGCGAAGGCTACTTCTTCAAGAACATCAGAGAGAGCCGATTCTTCACCGATGATCCGCGTCGAGCTCACCTTTTCTTCCTTCCTATTTCTTGCCACAAAATGCGAGGCAGAGGGTTGACTAACGAGCGTATGATTGATGAAGTAGAGAAGTATGTGGAGCACCTAAAGTTTGAGTACCCTTATTGGAACAGAACATTGGGTGCTGATCACTTTTTTGTGACTTGTCACGATATCGGTGTCAAAGCTACTAAAGGAGTTCCACATATGATGAAAAATTCGATTCGAGTGATTTGTTCATCAAGGTATGACGACGACGGCTATATTCCACATAAGGATGTTACCCTCCCACAAGTTCAACTGCCATTTTTTCACCCTCCAGGAGGAAATGACATTAAGAATAGGAACACTCTTGCTTTCTGGGCTGGTCGTTCTGATTCTAGATTGAAAGAAGATCTAATAGCTATTTGGGACAATGATACTGAAATTGACATACAGAACAGCAGAGTTGACCTTCGAGCGACTGGGCCAGTGGTATACATGGAGAAACTTTATAAATCCAAGTTTTGTTTGTGCCCTCATGGGCCTATCGGCAGCAGTCGTATCGCAGACTCAATCCACTTTGGGTGTGTGCCAGATTCAAAAGCATTTCAAGTGGAATACACCTCCAGTCAGACAAGATGCGTTTCATATGGTCATGTATGAACTCTGGCGGCGCCGCCATCTGATTAGGTATTGATTTTTTCAATGAACT

Coding sequences of Glyma13g32950

Limit To All Plant Sequences

>Glyma13g32950.1   sequence type=CDS   gene model=Glyma13g32950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGAGTTCAAGGTCTTCGTCTATCCCGACGGAGATCCCGAAACCTATTTCCACACGCCGAGGAAACTCACCGGAAAATACGCCAGCGAAGGCTACTTCTTCAAGAACATCAGAGAGAGCCGATTCTTCACCGATGATCCGCGTCGAGCTCACCTTTTCTTCCTTCCTATTTCTTGCCACAAAATGCGAGGCAGAGGGTTGACTAACGAGCGTATGATTGATGAAGTAGAGAAGTATGTGGAGCACCTAAAGTTTGAGTACCCTTATTGGAACAGAACATTGGGTGCTGATCACTTTTTTGTGACTTGTCACGATATCGGTGTCAAAGCTACTAAAGGAGTTCCACATATGATGAAAAATTCGATTCGAGTGATTTGTTCATCAAGGTATGACGACGACGGCTATATTCCACATAAGGATGTTACCCTCCCACAAGTTCAACTGCCATTTTTTCACCCTCCAGGAGGAAATGACATTAAGAATAGGAACACTCTTGCTTTCTGGGCTGGTCGTTCTGATTCTAGATTGAAAGAAGATCTAATAGCTATTTGGGACAATGATACTGAAATTGACATACAGAACAGCAGAGTTGACCTTCGAGCGACTGGGCCAGTGGTATACATGGAGAAACTTTATAAATCCAAGTTTTGTTTGTGCCCTCATGGGCCTATCGGCAGCAGTCGTATCGCAGACTCAATCCACTTTGGGTGTGTGCCAGTTATCATGTCAAAATATTATGACTTGCCTTTTAATGATATTCTGGATTGGACTCAATTTTCTATTGTACTGAAGGAAACCGACGTTTATCAGCTCAAATATACTCTCAGAAGCATATCTGAGAAACATTTCATCACATTGAATCATAACATAGTGAAGATTCAAAAGCATTTCAAGTGGAATACACCTCCAGTCAGACAAGATGCGTTTCATATGGTCATGTATGAACTCTGGCGGCGCCGCCATCTGATTAGGTATTGA

>Glyma13g32950.2   sequence type=CDS   gene model=Glyma13g32950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGAGTTCAAGGTCTTCGTCTATCCCGACGGAGATCCCGAAACCTATTTCCACACGCCGAGGAAACTCACCGGAAAATACGCCAGCGAAGGCTACTTCTTCAAGAACATCAGAGAGAGCCGATTCTTCACCGATGATCCGCGTCGAGCTCACCTTTTCTTCCTTCCTATTTCTTGCCACAAAATGCGAGGCAGAGGGTTGACTAACGAGCGTATGATTGATGAAGTAGAGAAGTATGTGGAGCACCTAAAGTTTGAGTACCCTTATTGGAACAGAACATTGGGTGCTGATCACTTTTTTGTGACTTGTCACGATATCGGTGTCAAAGCTACTAAAGGAGTTCCACATATGATGAAAAATTCGATTCGAGTGATTTGTTCATCAAGGTATGACGACGACGGCTATATTCCACATAAGGATGTTACCCTCCCACAAGTTCAACTGCCATTTTTTCACCCTCCAGGAGGAAATGACATTAAGAATAGGAACACTCTTGCTTTCTGGGCTGGTCGTTCTGATTCTAGATTGAAAGAAGATCTAATAGCTATTTGGGACAATGATACTGAAATTGACATACAGAACAGCAGAGTTGACCTTCGAGCGACTGGGCCAGTGGTATACATGGAGAAACTTTATAAATCCAAGTTTTGTTTGTGCCCTCATGGGCCTATCGGCAGCAGTCGTATCGCAGACTCAATCCACTTTGGGTGTGTGCCAGATTCAAAAGCATTTCAAGTGGAATACACCTCCAGTCAGACAAGATGCGTTTCATATGGTCATGTATGA

Predicted protein sequences of Glyma13g32950

Limit To All Plant Sequences

>Glyma13g32950.1   sequence type=predicted peptide   gene model=Glyma13g32950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEFKVFVYPDGDPETYFHTPRKLTGKYASEGYFFKNIRESRFFTDDPRRAHLFFLPISCHKMRGRGLTNERMIDEVEKYVEHLKFEYPYWNRTLGADHFFVTCHDIGVKATKGVPHMMKNSIRVICSSRYDDDGYIPHKDVTLPQVQLPFFHPPGGNDIKNRNTLAFWAGRSDSRLKEDLIAIWDNDTEIDIQNSRVDLRATGPVVYMEKLYKSKFCLCPHGPIGSSRIADSIHFGCVPVIMSKYYDLPFNDILDWTQFSIVLKETDVYQLKYTLRSISEKHFITLNHNIVKIQKHFKWNTPPVRQDAFHMVMYELWRRRHLIRY*

>Glyma13g32950.2   sequence type=predicted peptide   gene model=Glyma13g32950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEFKVFVYPDGDPETYFHTPRKLTGKYASEGYFFKNIRESRFFTDDPRRAHLFFLPISCHKMRGRGLTNERMIDEVEKYVEHLKFEYPYWNRTLGADHFFVTCHDIGVKATKGVPHMMKNSIRVICSSRYDDDGYIPHKDVTLPQVQLPFFHPPGGNDIKNRNTLAFWAGRSDSRLKEDLIAIWDNDTEIDIQNSRVDLRATGPVVYMEKLYKSKFCLCPHGPIGSSRIADSIHFGCVPDSKAFQVEYTSSQTRCVSYGHV*

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