Glyma13g32830 - SoyBase

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Report for Sequence Feature Glyma13g32830

Feature Type:	gene_model
Chromosome:	Gm13
Start:	34897236
stop:	34899972
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g32830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72680	AT	Annotation by Michelle Graham. TAIR10: cinnamyl-alcohol dehydrogenase \| chr1:27359346-27360876 REVERSE LENGTH=355	SoyBase	E_val: 0	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009809	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0046482	GO-bp	Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016616	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0048037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cofactor binding	SoyBase	N/A	ISS
KOG0023	KOG	Alcohol dehydrogenase, class V	JGI		ISS
PTHR11695	Panther	ALCOHOL DEHYDROGENASE RELATED	JGI		ISS
PTHR11695:SF285	Panther	QUINONE OXIDOREDUCTASE-RELATED	JGI		ISS
PF00107	PFAM	Zinc-binding dehydrogenase	JGI		ISS
PF08240	PFAM	Alcohol dehydrogenase GroES-like domain	JGI		ISS
UniRef100_G7IS81	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cinnamyl alcohol dehydrogenase n=1 Tax=Medicago truncatula RepID=G7IS81_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00005AE619	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00005AE619 related cluster n=1 Tax=unknown RepID=UPI00005AE619	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g32830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g32830

Paralog	Evidence	Comments
Glyma15g06460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g32830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g255300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g32830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g32830

Limit To All Plant Sequences

>Glyma13g32830.2   sequence type=transcript   gene model=Glyma13g32830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTTTGGTGAAATACGGGGTAGGAGGAGGGGATAGAGAAGCGAAAGAAACCAAACCACAATAAAATATATAAAAGCCCCTTTGATAGAACAGTGATACATACATTTGCCTTTTCTTTCTTACTCATCACGTTCGTTTCGTGGATCCTTACTCATCACAAGTGTGAGAAAAATTATGAGTTCCAAAGGTGTTGGTGAAGATTGCCTGGGATGGGCAGCAAGAGATGCATCCGGAGTTCTATCACCTTACAAATTCAGTCGCAGGACTCTTGGGAACGAAGATGTTCATATTAAAATTACGCACTGTGGTGTTTGCTTCGCTGATGTAGTTTGGACAAGGAATAAACATGGTGACTCAAAGTATCCTGTCGTGCCTGGTCATGAGATTGCTGGGATTGTGACAAAGGTTGGCGCCAATGTCCACCATTTTAAGGTTGGCGACCATGTTGGAGTGGGGACTTATATAAACTCATGTAGGGATTGTGAGTATTGTAATGATGGACAAGAAGTTCATTGTACCAAGGGATCTGTATACACTTTTAATGGTGTTGATTTTGATGGTACAATTACAAAAGGAGGATACTCCAGTTACATAGTAGTCCATGAGAGGTACTGCTTCATGATACCAAAAAGCTATCCATTGGCTTCCGCAGCTCCTTTGCTTTGTGCTGGAATTACTGTTTATTCACCGATGGTCCGCCACAAGATGAATCAACCTGGTAAATCTCTAGGAGTGATTGGTCTTGGTGGCCTCGGTCATATGGCGGTGAAATTTGGAAAGGCATTTGGTTTGAGTGTAACGGTTTTTAGCACTAGTATATCCAAGAAAGAGGAGGCACTGAGCCTGCTTGGCGCAGACAAATTTGTTGTTTCATCTAATCAAGAGGAAATGACGGCGTTGGCTAAATCGTTGGACTTTATAATCGACACAGCATCTGGTGATCACTCGTTTGATCCTTACATGTCACTGCTGAAGACATATGGTGTTTTTGTCCTAGTTGGTTTCCCTAGTCAAGTCAAATTTATCCCTGCAAGCCTTAATATAGGTATGTTGCCTTTGAAGTATAGAAAGCTTGTTGGAATGGCCAGTTTTCATTCGTGTAATTCAATTCGTTGAAGCAGTGGAACTGTAAATATTCATCTTCTGTACGACAGGATCAAAGACTGTTGCCGGAAGTGTTACAGGTGGTACAAAAGATATACAGGAGATGATTGGCTTCTGTGCTGCAAACGAGATTCACCCAAATATAGAGGTGATTCCAATCGAGTATGCCAATGAAGCTCTTGAGAGGCTCATAAATAGGGACGTCAAGTACCGGTTTGTAATAGATGTTGAGAATTCCCTGAAAGAAAAATGAGTTGTTGCCTCCCAAATTGGACATTATTGGACTTCACCTTGTTCGATAAATAATGATGGTCGGAGTTCGTAATTTACTTACATAGAGTTGATTTGAATTTTCTTTAATTATTTTGTGAACTAATATTATGTGATTATAAGAATATTTTGGATTTTTAAATAATAATAATTATGGAAATTAATATGGTGTTATTTTAATTTTAATAATAGATGTTGTAAGTAGTTTGCTTCTAAAGTGTAAAAATTCAATCAAGATTGGAATGCATGATAAGTTTATTG

Coding sequences of Glyma13g32830

Limit To All Plant Sequences

>Glyma13g32830.1   sequence type=CDS   gene model=Glyma13g32830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCCAAAGGTGTTGGTGAAGATTGCCTGGGATGGGCAGCAAGAGATGCATCCGGAGTTCTATCACCTTACAAATTCAGTCGCAGGACTCTTGGGAACGAAGATGTTCATATTAAAATTACGCACTGTGGTGTTTGCTTCGCTGATGTAGTTTGGACAAGGAATAAACATGGTGACTCAAAGTATCCTGTCGTGCCTGGTCATGAGATTGCTGGGATTGTGACAAAGGTTGGCGCCAATGTCCACCATTTTAAGGTTGGCGACCATGTTGGAGTGGGGACTTATATAAACTCATGTAGGGATTGTGAGTATTGTAATGATGGACAAGAAGTTCATTGTACCAAGGGATCTGTATACACTTTTAATGGTGTTGATTTTGATGGTACAATTACAAAAGGAGGATACTCCAGTTACATAGTAGTCCATGAGAGGTACTGCTTCATGATACCAAAAAGCTATCCATTGGCTTCCGCAGCTCCTTTGCTTTGTGCTGGAATTACTGTTTATTCACCGATGGTCCGCCACAAGATGAATCAACCTGGTAAATCTCTAGGAGTGATTGGTCTTGGTGGCCTCGGTCATATGGCGGTGAAATTTGGAAAGGCATTTGGTTTGAGTGTAACGGTTTTTAGCACTAGTATATCCAAGAAAGAGGAGGCACTGAGCCTGCTTGGCGCAGACAAATTTGTTGTTTCATCTAATCAAGAGGAAATGACGGCGTTGGCTAAATCGTTGGACTTTATAATCGACACAGCATCTGGTGATCACTCGTTTGATCCTTACATGTCACTGCTGAAGACATATGGTGTTTTTGTCCTAGTTGGTTTCCCTAGTCAAGTCAAATTTATCCCTGCAAGCCTTAATATAGGATCAAAGACTGTTGCCGGAAGTGTTACAGGTGGTACAAAAGATATACAGGAGATGATTGGCTTCTGTGCTGCAAACGAGATTCACCCAAATATAGAGGTGATTCCAATCGAGTATGCCAATGAAGCTCTTGAGAGGCTCATAAATAGGGACGTCAAGTACCGGTTTGTAATAGATGTTGAGAATTCCCTGAAAGAAAAATGA

>Glyma13g32830.2   sequence type=CDS   gene model=Glyma13g32830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCCAAAGGTGTTGGTGAAGATTGCCTGGGATGGGCAGCAAGAGATGCATCCGGAGTTCTATCACCTTACAAATTCAGTCGCAGGACTCTTGGGAACGAAGATGTTCATATTAAAATTACGCACTGTGGTGTTTGCTTCGCTGATGTAGTTTGGACAAGGAATAAACATGGTGACTCAAAGTATCCTGTCGTGCCTGGTCATGAGATTGCTGGGATTGTGACAAAGGTTGGCGCCAATGTCCACCATTTTAAGGTTGGCGACCATGTTGGAGTGGGGACTTATATAAACTCATGTAGGGATTGTGAGTATTGTAATGATGGACAAGAAGTTCATTGTACCAAGGGATCTGTATACACTTTTAATGGTGTTGATTTTGATGGTACAATTACAAAAGGAGGATACTCCAGTTACATAGTAGTCCATGAGAGGTACTGCTTCATGATACCAAAAAGCTATCCATTGGCTTCCGCAGCTCCTTTGCTTTGTGCTGGAATTACTGTTTATTCACCGATGGTCCGCCACAAGATGAATCAACCTGGTAAATCTCTAGGAGTGATTGGTCTTGGTGGCCTCGGTCATATGGCGGTGAAATTTGGAAAGGCATTTGGTTTGAGTGTAACGGTTTTTAGCACTAGTATATCCAAGAAAGAGGAGGCACTGAGCCTGCTTGGCGCAGACAAATTTGTTGTTTCATCTAATCAAGAGGAAATGACGGCGTTGGCTAAATCGTTGGACTTTATAATCGACACAGCATCTGGTGATCACTCGTTTGATCCTTACATGTCACTGCTGAAGACATATGGTGTTTTTGTCCTAGTTGGTTTCCCTAGTCAAGTCAAATTTATCCCTGCAAGCCTTAATATAGGTATGTTGCCTTTGAAGTATAGAAAGCTTGTTGGAATGGCCAGTTTTCATTCGTGTAATTCAATTCGTTGA

Predicted protein sequences of Glyma13g32830

Limit To All Plant Sequences

>Glyma13g32830.1   sequence type=predicted peptide   gene model=Glyma13g32830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSKGVGEDCLGWAARDASGVLSPYKFSRRTLGNEDVHIKITHCGVCFADVVWTRNKHGDSKYPVVPGHEIAGIVTKVGANVHHFKVGDHVGVGTYINSCRDCEYCNDGQEVHCTKGSVYTFNGVDFDGTITKGGYSSYIVVHERYCFMIPKSYPLASAAPLLCAGITVYSPMVRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKKEEALSLLGADKFVVSSNQEEMTALAKSLDFIIDTASGDHSFDPYMSLLKTYGVFVLVGFPSQVKFIPASLNIGSKTVAGSVTGGTKDIQEMIGFCAANEIHPNIEVIPIEYANEALERLINRDVKYRFVIDVENSLKEK*

>Glyma13g32830.2   sequence type=predicted peptide   gene model=Glyma13g32830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSKGVGEDCLGWAARDASGVLSPYKFSRRTLGNEDVHIKITHCGVCFADVVWTRNKHGDSKYPVVPGHEIAGIVTKVGANVHHFKVGDHVGVGTYINSCRDCEYCNDGQEVHCTKGSVYTFNGVDFDGTITKGGYSSYIVVHERYCFMIPKSYPLASAAPLLCAGITVYSPMVRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKKEEALSLLGADKFVVSSNQEEMTALAKSLDFIIDTASGDHSFDPYMSLLKTYGVFVLVGFPSQVKFIPASLNIGMLPLKYRKLVGMASFHSCNSIR*

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