SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G09650 | AT | Annotation by Michelle Graham. TAIR10: pyrophosphorylase 6 | chr5:2991331-2993117 REVERSE LENGTH=300 | SoyBase | E_val: 1.00E-156 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006796 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphate-containing compound metabolic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0019684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0043900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
| GO:0004427 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inorganic diphosphatase activity | SoyBase | N/A | ISS |
| GO:0016462 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyrophosphatase activity | SoyBase | N/A | ISS |
| KOG1626 | KOG | Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 | JGI | ISS | |
| PTHR10286 | Panther | INORGANIC PYROPHOSPHATASE | JGI | ISS | |
| PTHR10286:SF0 | Panther | INORGANIC PYROPHOSPHATASE | JGI | ISS | |
| PF00719 | PFAM | Inorganic pyrophosphatase | JGI | ISS | |
| UniRef100_B7FIM7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Soluble inorganic pyrophosphatase n=1 Tax=Medicago truncatula RepID=B7FIM7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M2J1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M2J1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g32660 not represented in the dataset |
Glyma13g32660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g06670 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g253600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g32660.1 sequence type=CDS gene model=Glyma13g32660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCCACCAGAGCAGTAACCATTGCCAGCAACTCCACATGCTCTCTGCTTGCAAAGAAAACCTTTGTGGGTGGCACTGCTCTTTCCCTCAACAACCTCAAATTTTGTCGTACTAGGAGGTCTTACACCTGCAGAGCCATCTACAATCCCCTGGTTGTCGTCAAGGAAGAAGGCCAACCCGAAACCTTTGATTATAGAGTTTTCTTTGTTGACAAATCTGGCAAGAAGGTTTCTCCCTGGCATGATATTCCCTTGCGGTTAGGTGATGATATCTTTAACTTCATTGTCGAGATTCCTAAAGAATCCAGTGCAAAGATGGAGGTTGCCACTGATGAGTCTTTCACTCCCATAAAACAAGATACAAAAAAGGGGAAGCTCCGATATTATCCCTATAATATACACTGGAACTATGGCTTACTTCCACAAACATGGGAAGATCCATCTTTTGCAAACTCTGAAGTTGAAGGAGCATTGGGAGATAATGATCCAGTTGATGTGGTTGAGATTGGTGAAAGACAGAGGAAAATAGGTGAGGTTCTCAAGGTCAAACCCTTGGGTGCATTAGCCATGATTGATGAAGGAGAACTTGATTGGAAAATAGTTGCAATTTCATTAGATGATCCGAAGGCGCCATTTGTAAATGATGTTGATGATGTTGAGAAGCATTTTCCAGGAACTCTAACTGCAATTAGGGACTGGTTTAGAGACTACAAGATACCTGATGGAAAACCTGCTAATAAATTTGGACTTGGCAACAAGGCAGCAAATAAGGATTATGCGCTTAAGGTCATCACAGAGACCAATGAGTCCTGGAATAAACTTATCAAGAGATCAATTCCTGCAGGAGAGTTGTCACTTGTGTAG
>Glyma13g32660.1 sequence type=predicted peptide gene model=Glyma13g32660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAATRAVTIASNSTCSLLAKKTFVGGTALSLNNLKFCRTRRSYTCRAIYNPLVVVKEEGQPETFDYRVFFVDKSGKKVSPWHDIPLRLGDDIFNFIVEIPKESSAKMEVATDESFTPIKQDTKKGKLRYYPYNIHWNYGLLPQTWEDPSFANSEVEGALGDNDPVDVVEIGERQRKIGEVLKVKPLGALAMIDEGELDWKIVAISLDDPKAPFVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLGNKAANKDYALKVITETNESWNKLIKRSIPAGELSLV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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