Glyma13g32331 - SoyBase

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Report for Sequence Feature Glyma13g32331

Feature Type:	gene_model
Chromosome:	Gm13
Start:	34546415
stop:	34548378
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g32331

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11430	AT	Annotation by Michelle Graham. TAIR10: plastid developmental protein DAG, putative \| chr1:3847273-3848938 FORWARD LENGTH=232	SoyBase	E_val: 4.00E-105	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006399	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process	SoyBase	N/A	ISS
GO:0009073	GO-bp	Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0045036	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:1900865	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast RNA modification	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
UniRef100_C6TLP0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TLP0_SOYBN	SoyBase	E_val: 4.00E-166	ISS
UniRef100_G7IK38	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DAG protein n=1 Tax=Medicago truncatula RepID=G7IK38_MEDTR	SoyBase	E_val: 2.00E-119	ISS

Expression Patterns of Glyma13g32331

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g32331 not represented in the dataset	Glyma13g32331 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g32331

Paralog	Evidence	Comments
Glyma15g06990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g32331 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g249900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g32331

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g32331

Limit To All Plant Sequences

>Glyma13g32331.2   sequence type=transcript   gene model=Glyma13g32331   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGATGAAACTGGACTGAAAATTTGACCCAATGAGTCTAGCATCTTCTTACAAGATTGTCGGTGACGACGCCGTATCAAATAAAAAAAAAAATCTGTCGTCGAGGGAGCCTTATCGTTTTACTACGCTCTCTTGGACTCAGTTCAGTTTCACGACCGATCCTACAATGGCGACAGTCACGTTTTCCTTTTCCGCTAAAACCCTAACTCTACCTTATCACCCCAAAACCCCAATCTCCAACTTTACCCCGGTAACGAATCTTCGCCTCCCTCCTTCTATCGTGACCCGAACCCGCAATTGTAACCGGATTCGGGCGGCGCTGGATGGGGATTTCTCGGCGAAAAGGAGCAGCAGCAGCAACAACAACGACCAGAGGGAGACGATAATGTTACCTGGTTGTGACTACAACCATTGGCTGATTGTGATGGAGTTTCCAAAGGACCCTGCACCCACCCGTGAACAGATGATTGACACGTACCTCGACACTCTTGCCACTGTCTTGGGAAGCATGGAGGAAGCTAAAAAGAACATGTATGCCTTTAGCACCACCACTTACACTGGATTTCAGTGCACTGTTGATGAAGCAACCTCCGAGAAATTCAAGGGTTTGCCTGGGGTTCTTTGGGTACTGCCAGACTCCTATATAGATGTTAAGAATAAAGACTACGGAGGTGACAAGTACATAAATGGGGAGATTATTCCTTGTAAGTACCCTACCTACCAACCGAAACGTAGCGCACCAAAGAATGAGAGTAGAAGGTATGAGAGACGGAGAGATGGCCCTCCCCCTGACCGCAGAAGGCCAAGACAAGAGGCCGCTGCCTCCGATTCATCCTCTACATGAGGTGAGTTTCAGTTTTGCTGATAGTAACTAATGCCAAGTGAAAGCTGCTCCTTATCACAGCTCTATCATGCTCATGGTCATTTTATCAAATAGAAGATTGAACTTGGGTTGAATTCTCATCAGATGCATACAATGTTTCTTGCAAGCTCAAACTGGTATTTTCACAATTCATCTTGAGGAATATGTGCTTTTGGACTATGAGTATGACATGTGGGACAATTGTTAGGTTTATTTGTCTGTGTAATTTGGAGAGCTACTTATCGTGCAACCAGTTTGTTTTCGTGATAACTTTTTCTGCAAGTTTCATGGCAGCTACAATATTAACACATAAAGTGACTGATATGAACTGTACAAGTTTAGATAATATGCATATATAGCCTTTTGTCATTATCTTAAGCAGCCAATTGATGAATCCTTAAGTTAGTCTTGCTACAATAATCTCAGTTTTGCTGGGCTTCATCCTGCCGACTCCCCCATCAGTGTAGTAGGCCAATGCAAATTTGTTAGAACTTGGAAATCGGTGCATTCATAAACCATCCATGATTGCCAAATAAAATATAGCAGTTGTTTTGTTGAGGATAGTTAATTT

>Glyma13g32331.3   sequence type=transcript   gene model=Glyma13g32331   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGATGAAACTGGACTGAAAATTTGACCCAATGAGTCTAGCATCTTCTTACAAGATTGTCGGTGACGACGCCGTATCAAATAAAAAAAAAAATCTGTCGTCGAGGGAGCCTTATCGTTTTACTACGCTCTCTTGGACTCAGTTCAGTTTCACGACCGATCCTACAATGGCGACAGTCACGTTTTCCTTTTCCGCTAAAACCCTAACTCTACCTTATCACCCCAAAACCCCAATCTCCAACTTTACCCCGGTAACGAATCTTCGCCTCCCTCCTTCTATCGTGACCCGAACCCGCAATTGTAACCGGATTCGGGCGGCGCTGGATGGGGATTTCTCGGCGAAAAGGAGCAGCAGCAGCAACAACAACGACCAGAGGGAGACGATAATGTTACCTGGTTGTGACTACAACCATTGGCTGATTGTGATGGAGTTTCCAAAGGACCCTGCACCCACCCGTGAACAGATGATTGACACGTACCTCGACACTCTTGCCACTGTCTTGGGAAGCATGGAGGAAGCTAAAAAGAACATGTATGCCTTTAGCACCACCACTTACACTGGATTTCAGTGCACTGTTGATGAAGCAACCTCCGAGAAATTCAAGGGTTTGCCTGGGGTTCTTTGGGTACTGCCAGACTCCTATATAGATGTTAAGAATAAAGACTACGGAGGTTTCTTTTTAATTTCTACACTAATTGATTTCTGTAGTATTTCATATTCTACTGCTTGATTATGTTGTTCTTCTTTGGATTTAGGTGACAAGTACATAAATGGGGAGATTATTCCTTGTAAGTACCCTACCTACCAACCGAAACGTAGCGCACCAAAGAATGAGAGTAGAAGGTATGAGAGACGGAGAGATGGCCCTCCCCCTGACCGCAGAAGGCCAAGACAAGAGGCCGCTGCCTCCGATTCATCCTCTACATGAGGTTGTGCATTGAATTATCTACTCCACTCTTTGGATGTTTTTGGTCTCTCGTTACTTATTGATACCTGAGTCAAGTATCACAAATCCTTGGCTTCATTTTTAACTTACACTAAATGTCACACTGTTTCATTACTTTTTTTTTTTTTTTT

>Glyma13g32331.4   sequence type=transcript   gene model=Glyma13g32331   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGATGAAACTGGACTGAAAATTTGACCCAATGAGTCTAGCATCTTCTTACAAGATTGTCGGTGACGACGCCGTATCAAATAAAAAAAAAAATCTGTCGTCGAGGGAGCCTTATCGTTTTACTACGCTCTCTTGGACTCAGTTCAGTTTCACGACCGATCCTACAATGGCGACAGTCACGTTTTCCTTTTCCGCTAAAACCCTAACTCTACCTTATCACCCCAAAACCCCAATCTCCAACTTTACCCCGGTAACGAATCTTCGCCTCCCTCCTTCTATCGTGACCCGAACCCGCAATTGTAACCGGATTCGGGCGGCGCTGGATGGGGATTTCTCGGCGAAAAGGAGCAGCAGCAGCAACAACAACGACCAGAGGGAGACGATAATGTTACCTGGTTGTGACTACAACCATTGGCTGATTGTGATGGAGTTTCCAAAGGACCCTGCACCCACCCGTGAACAGATGATTGACACGTACCTCGACACTCTTGCCACTGTCTTGGGAAGCATGGAGGAAGCTAAAAAGAACATGTATGCCTTTAGCACCACCACTTACACTGGATTTCAGTGCACTGTTGATGAAGCAACCTCCGAGAAATTCAAGGGTTTGCCTGGGGTTCTTTGGGTACTGCCAGACTCCTATATAGATGTTAAGAATAAAGACTACGGAGGTTTCTTTTTAATTTCTACACTAATTGATTTCTGTAGTATTTCATATTCTACTGCTTGATTATGTTGTTCTTCTTTGGATTTAGGTGACAAGTACATAAATGGGGAGATTATTCCTTGTAAGTACCCTACCTACCAACCGAAACGTAGCGCACCAAAGAATGAGAGTAGAAGGTATGAGAGACGGAGAGATGGCCCTCCCCCTGACCGCAGAAGGCCAAGACAAGAGGCCGCTGCCTCCGATTCATCCTCTACATGAGCCTTGCAGGTGAGTTTCAGTTTTGCTGATAGTAACTAATGCCAAGTGAAAGCTGCTCCTTATCACAGCTCTATCATGCTCATGGTCATTTTATCAAATAGAAGATTGAACTTGGGTTGAATTCTCATCAGATGCATACAATGTTTCTTGCAAGCTCAAACTGGTATTTTCACAATTCATCTTGAGGAATATGTGCTTTTGGACTATGAGTATGACATGTGGGACAATTGTTAGGTTTATTTGTCTGTGTAATTTGGAGAGCTACTTATCGTGCAACCAGTTTGTTTTCGTGATAACTTTTTCTGCAAGTTTCATGGCAGCTACAATATTAACACATAAAGTGACTGATATGAACTGTACAAGTTTAGATAATATGCATATATAGCCTTTTGTCATTATCTTAAGCAGCCAATTGATGAATCCTTAAGTTAGTCTTGCTACAATAATCTCAGTTTTGCTGGGCTTCATCCTGCCGACTCCCCCATCAGTGTAGTAGGCCAATGCAAATTTGTTAGAACTTGGAAATCGGTGCATTCATAAACCATCCATGATTGCCAAATAAAATATAGCAGTTGTTTTGTTGAGGATAGTTAATTT

Coding sequences of Glyma13g32331

Limit To All Plant Sequences

>Glyma13g32331.1   sequence type=CDS   gene model=Glyma13g32331   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCTAGCATCTTCTTACAAGATTGTCGGTGACGACGCCGTATCAAATAAAAAAAAAAATCTGTCGTCGAGGGAGCCTTATCGTTTTACTACGCTCTCTTGGACTCAGTTCAGTTTCACGACCGATCCTACAATGGCGACAGTCACGTTTTCCTTTTCCGCTAAAACCCTAACTCTACCTTATCACCCCAAAACCCCAATCTCCAACTTTACCCCGGTAACGAATCTTCGCCTCCCTCCTTCTATCGTGACCCGAACCCGCAATTGTAACCGGATTCGGGCGGCGCTGGATGGGGATTTCTCGGCGAAAAGGAGCAGCAGCAGCAACAACAACGACCAGAGGGAGACGATAATGTTACCTGGTTGTGACTACAACCATTGGCTGATTGTGATGGAGTTTCCAAAGGACCCTGCACCCACCCGTGAACAGATGATTGACACGTACCTCGACACTCTTGCCACTGTCTTGGGAAGCATGGAGGAAGCTAAAAAGAACATGTATGCCTTTAGCACCACCACTTACACTGGATTTCAGTGCACTGTTGATGAAGCAACCTCCGAGAAATTCAAGGGTTTGCCTGGGGTTCTTTGGGTACTGCCAGACTCCTATATAGATGTTAAGAATAAAGACTACGGAGGTGACAAGTACATAAATGGGGAGATTATTCCTTGTAAGTACCCTACCTACCAACCGAAACGTAGCGCACCAAAGAATGAGAGTAGAAGGTATGAGAGACGGAGAGATGGCCCTCCCCCTGACCGCAGAAGGCCAAGACAAGAGGCCGCTGCCTCCGATTCATCCTCTACATGA

>Glyma13g32331.2   sequence type=CDS   gene model=Glyma13g32331   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCTAGCATCTTCTTACAAGATTGTCGGTGACGACGCCGTATCAAATAAAAAAAAAAATCTGTCGTCGAGGGAGCCTTATCGTTTTACTACGCTCTCTTGGACTCAGTTCAGTTTCACGACCGATCCTACAATGGCGACAGTCACGTTTTCCTTTTCCGCTAAAACCCTAACTCTACCTTATCACCCCAAAACCCCAATCTCCAACTTTACCCCGGTAACGAATCTTCGCCTCCCTCCTTCTATCGTGACCCGAACCCGCAATTGTAACCGGATTCGGGCGGCGCTGGATGGGGATTTCTCGGCGAAAAGGAGCAGCAGCAGCAACAACAACGACCAGAGGGAGACGATAATGTTACCTGGTTGTGACTACAACCATTGGCTGATTGTGATGGAGTTTCCAAAGGACCCTGCACCCACCCGTGAACAGATGATTGACACGTACCTCGACACTCTTGCCACTGTCTTGGGAAGCATGGAGGAAGCTAAAAAGAACATGTATGCCTTTAGCACCACCACTTACACTGGATTTCAGTGCACTGTTGATGAAGCAACCTCCGAGAAATTCAAGGGTTTGCCTGGGGTTCTTTGGGTACTGCCAGACTCCTATATAGATGTTAAGAATAAAGACTACGGAGGTGACAAGTACATAAATGGGGAGATTATTCCTTGTAAGTACCCTACCTACCAACCGAAACGTAGCGCACCAAAGAATGAGAGTAGAAGGTATGAGAGACGGAGAGATGGCCCTCCCCCTGACCGCAGAAGGCCAAGACAAGAGGCCGCTGCCTCCGATTCATCCTCTACATGA

>Glyma13g32331.3   sequence type=CDS   gene model=Glyma13g32331   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCTAGCATCTTCTTACAAGATTGTCGGTGACGACGCCGTATCAAATAAAAAAAAAAATCTGTCGTCGAGGGAGCCTTATCGTTTTACTACGCTCTCTTGGACTCAGTTCAGTTTCACGACCGATCCTACAATGGCGACAGTCACGTTTTCCTTTTCCGCTAAAACCCTAACTCTACCTTATCACCCCAAAACCCCAATCTCCAACTTTACCCCGGTAACGAATCTTCGCCTCCCTCCTTCTATCGTGACCCGAACCCGCAATTGTAACCGGATTCGGGCGGCGCTGGATGGGGATTTCTCGGCGAAAAGGAGCAGCAGCAGCAACAACAACGACCAGAGGGAGACGATAATGTTACCTGGTTGTGACTACAACCATTGGCTGATTGTGATGGAGTTTCCAAAGGACCCTGCACCCACCCGTGAACAGATGATTGACACGTACCTCGACACTCTTGCCACTGTCTTGGGAAGCATGGAGGAAGCTAAAAAGAACATGTATGCCTTTAGCACCACCACTTACACTGGATTTCAGTGCACTGTTGATGAAGCAACCTCCGAGAAATTCAAGGGTTTGCCTGGGGTTCTTTGGGTACTGCCAGACTCCTATATAGATGTTAAGAATAAAGACTACGGAGGTTTCTTTTTAATTTCTACACTAATTGATTTCTGTAGTATTTCATATTCTACTGCTTGA

>Glyma13g32331.4   sequence type=CDS   gene model=Glyma13g32331   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCTAGCATCTTCTTACAAGATTGTCGGTGACGACGCCGTATCAAATAAAAAAAAAAATCTGTCGTCGAGGGAGCCTTATCGTTTTACTACGCTCTCTTGGACTCAGTTCAGTTTCACGACCGATCCTACAATGGCGACAGTCACGTTTTCCTTTTCCGCTAAAACCCTAACTCTACCTTATCACCCCAAAACCCCAATCTCCAACTTTACCCCGGTAACGAATCTTCGCCTCCCTCCTTCTATCGTGACCCGAACCCGCAATTGTAACCGGATTCGGGCGGCGCTGGATGGGGATTTCTCGGCGAAAAGGAGCAGCAGCAGCAACAACAACGACCAGAGGGAGACGATAATGTTACCTGGTTGTGACTACAACCATTGGCTGATTGTGATGGAGTTTCCAAAGGACCCTGCACCCACCCGTGAACAGATGATTGACACGTACCTCGACACTCTTGCCACTGTCTTGGGAAGCATGGAGGAAGCTAAAAAGAACATGTATGCCTTTAGCACCACCACTTACACTGGATTTCAGTGCACTGTTGATGAAGCAACCTCCGAGAAATTCAAGGGTTTGCCTGGGGTTCTTTGGGTACTGCCAGACTCCTATATAGATGTTAAGAATAAAGACTACGGAGGTTTCTTTTTAATTTCTACACTAATTGATTTCTGTAGTATTTCATATTCTACTGCTTGA

Predicted protein sequences of Glyma13g32331

Limit To All Plant Sequences

>Glyma13g32331.1   sequence type=predicted peptide   gene model=Glyma13g32331   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLASSYKIVGDDAVSNKKKNLSSREPYRFTTLSWTQFSFTTDPTMATVTFSFSAKTLTLPYHPKTPISNFTPVTNLRLPPSIVTRTRNCNRIRAALDGDFSAKRSSSSNNNDQRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLDTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCKYPTYQPKRSAPKNESRRYERRRDGPPPDRRRPRQEAAASDSSST*

>Glyma13g32331.2   sequence type=predicted peptide   gene model=Glyma13g32331   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLASSYKIVGDDAVSNKKKNLSSREPYRFTTLSWTQFSFTTDPTMATVTFSFSAKTLTLPYHPKTPISNFTPVTNLRLPPSIVTRTRNCNRIRAALDGDFSAKRSSSSNNNDQRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLDTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCKYPTYQPKRSAPKNESRRYERRRDGPPPDRRRPRQEAAASDSSST*

>Glyma13g32331.3   sequence type=predicted peptide   gene model=Glyma13g32331   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLASSYKIVGDDAVSNKKKNLSSREPYRFTTLSWTQFSFTTDPTMATVTFSFSAKTLTLPYHPKTPISNFTPVTNLRLPPSIVTRTRNCNRIRAALDGDFSAKRSSSSNNNDQRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLDTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGLPGVLWVLPDSYIDVKNKDYGGFFLISTLIDFCSISYSTA*

>Glyma13g32331.4   sequence type=predicted peptide   gene model=Glyma13g32331   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLASSYKIVGDDAVSNKKKNLSSREPYRFTTLSWTQFSFTTDPTMATVTFSFSAKTLTLPYHPKTPISNFTPVTNLRLPPSIVTRTRNCNRIRAALDGDFSAKRSSSSNNNDQRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLDTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGLPGVLWVLPDSYIDVKNKDYGGFFLISTLIDFCSISYSTA*

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