Glyma13g32320 - SoyBase

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Report for Sequence Feature Glyma13g32320

Feature Type:	gene_model
Chromosome:	Gm13
Start:	34527036
stop:	34530282
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g32320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G61660	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr1:22754003-22756171 REVERSE LENGTH=393	SoyBase	E_val: 9.00E-67	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
UniRef100_G7IK44	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH112 n=1 Tax=Medicago truncatula RepID=G7IK44_MEDTR	SoyBase	E_val: 1.00E-167	ISS
UniRef100_UPI000233B647	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B647 related cluster n=1 Tax=unknown RepID=UPI000233B647	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g32320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g32320

Paralog	Evidence	Comments
Glyma15g07010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g32320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g249800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g32320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g32320

Limit To All Plant Sequences

>Glyma13g32320.3   sequence type=transcript   gene model=Glyma13g32320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTGGATTCAAAATTCTCTATTAATTTCTCTTTCATTCATTTGTCAAATCATCTCCATGTAATGCCAACCGCGTTCCGGTAAATTCCCCTAGTCGTATCCTTCCAACCGTTCCATATATAAAATGTCTCAAACCCCCTAACCTTTCTTACATCCCCAACAAGCTTCTAAGTGTGTAACTGTGTTAGAACAAGAGCTCAAAGATACAAAAAATTCAGGAAATTCAGAATTGAAGGACAAACAGATTCTGCAGATATAACATATAGCTAGTAGCATCAAGAAGTCTTGCTTGCCATGGCTGAGGATTTTCAAGCTGCTATCTGTGGTGAAAATTGGTGGAATAATATTAATCCAACAAGAAGTGTCTTTCCTCTTATGCCATCAACTTGTTCGGTGGCAGCAGCTGATCATGCAGGAAACTACAGCACTTGGCAAAGTACTACTGATTTCGTTGATTTGAAGGGAACAAGGTCTTGTGCTGAGCTGGAGACTGATAATAACTTGAGTTTTCTTGATGCTGAGAAGCCACAGCAGAGTGAAAGTGGTAGCATCTTGATCAATTCCACCTTACAAATGATGGGTTTTGGCAAGTCATCTTCAACTTCATCGAATTGGAATCAATCTTTATTAGGGAGCGGTTTTGATTCTGTGCTTCAAGAAGAAACAGGCATAGGTGGTGGCAGCCAAGTTTCCACCGTTGATGCTTTGAAGCCAATGAACCAAGAATTTTCCTTGGATCAGCAGAGTCTGAATTCTGTTGTTACAAGCACTGGATCATTATCTGGTGGTTTCCCAGTTGTTTCAGCCTCCTATGGTTACCCTTCAACATTGATACAAAGCTTATATGAGCCTGAGCCTCAACCACAACAACAGAACTCACTTTTCACCAACCCCTCCATGTCCTACTCATCATCTTCCGCAAACTATGGGATATGTTCCAATGAACTGTCACCAACTTGGTCCAAAGTTTCTTCCCTTCCCAAACCCTCAATGCCAAAGCAACAGCTCAGTGGATTGCACTTTTCCAACAACACTGCTTTCTGGAATTCTTCAGCCGAAGCACTTAATGACATAAGAGCAGGTGTTTTTACTTCATCACAAGCCCAATATCAAACGGCAAAATTTGAAGAGAAACCCAACTGCCCCAATACTCTATTAAACAAGCTCAAGAGAGAAGAATCACCAGACGCAGCGAAGAAAAATTCTCCTGAGCCTGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTTAGGAAAGAAAAGCTGGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGATACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTCCATGACCAAGTTTTGAGCACTCCATATATGAAAAACAACGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGACTCAGAAGGGGCAAAACAAGATTTGAGAAGCCGAGGGCTGTGTTTGGTGCCGATTTCAAGCACATTCCCAGTGGCTAATGAGACCAGTGTTGATTTCTGGACGTCTACATTTGGAGGCGCACTCATTGGCAGGTAGAGACAAGTGGAGAACTCGTGACAATAATAACTATATATTTATAAATAAACTAAAAGGAAGAAGAAGAAGAAGAAAACACGATTATGCTAAAGAGAAAATTAAAGCTGAAGAGAACAAAAGAGCAAAAAAGAAAAAGGAAGCTACTCTTCAAAGAGGACACGTAAAGCAGAATGATGTACACTAGTAAATGATTAGTGACTACTGGAAGAGATCGAATAATAGATTAATTAGCTATAGGTGCTTTAAGAAGTTTTAGTGTTTTTATTATTAACATCGATGAGGGGCAGGAACAAGTGCTAAATTCAGAGGCATTTGACATATTAGATTAGAGTTTTTGTTGCTGCTGTGGTTAGAGAGTCAGTATTATATGCCTGAATTTAGCAGATGGGGCTAGCTAGCTAACACGCCTTTTGTTCCTGCTATAATCGATGTATTATTGTAGTATATATTTTGAATCATTAAAGGGGTTTTACACCAACTTTAATTTTTTTTATTATTTATATGAAAAAAAATAATCAAAATAAAGCGGATTATATTGTACCGTTCAATTAATGTTCATTTTTTTCAGGTTAATTTAATCTTTTATTTGCTTATTGTATTAAAACGGGCTAGTGGTTACATAG

Coding sequences of Glyma13g32320

Limit To All Plant Sequences

>Glyma13g32320.2   sequence type=CDS   gene model=Glyma13g32320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGGATTTTCAAGCTGCTATCTGTGGTGAAAATTGGTGGAATAATATTAATCCAACAAGAAGTGTCTTTCCTCTTATGCCATCAACTTGTTCGGTGGCAGCAGCTGATCATGCAGGAAACTACAGCACTTGGCAAAGTACTACTGATTTCGTTGATTTGAAGGGAACAAGGTCTTGTGCTGAGCTGGAGACTGATAATAACTTGAGTTTTCTTGATGCTGAGAAGCCACAGCAGAGTGAAAGTGGTAGCATCTTGATCAATTCCACCTTACAAATGATGGGTTTTGGCAAGTCATCTTCAACTTCATCGAATTGGAATCAATCTTTATTAGGGAGCGGTTTTGATTCTGTGCTTCAAGAAGAAACAGGCATAGGTGGTGGCAGCCAAGTTTCCACCGTTGATGCTTTGAAGCCAATGAACCAAGAATTTTCCTTGGATCAGCAGAGTCTGAATTCTGTTGTTACAAGCACTGGATCATTATCTGGTGGTTTCCCAGTTGTTTCAGCCTCCTATGGTTACCCTTCAACATTGATACAAAGCTTATATGAGCCTGAGCCTCAACCACAACAACAGAACTCACTTTTCACCAACCCCTCCATGTCCTACTCATCATCTTCCGCAAACTATGGGATATGTTCCAATGAACTGTCACCAACTTGGTCCAAAGTTTCTTCCCTTCCCAAACCCTCAATGCCAAAGCAACAGCTCAGTGGATTGCACTTTTCCAACAACACTGCTTTCTGGAATTCTTCAGCCGAAGCACTTAATGACATAAGAGCAGGTGTTTTTACTTCATCACAAGCCCAATATCAAACGGCAAAATTTGAAGAGAAACCCAACTGCCCCAATACTCTATTAAACAAGCTCAAGAGAGAAGAATCACCAGACGCAGCGAAGAAAAATTCTCCTGAGCCTGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTTAGGAAAGAAAAGCTGGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGATACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTCCATGACCAAGTCAGTGTTTTGAGCACTCCATATATGAAAAACAACGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGACTCAGAAGGGGCAAAACAAGATTTGAGAAGCCGAGGGCTGTGTTTGGTGCCGATTTCAAGCACATTCCCAGTGGCTAATGAGACCAGTGTTGATTTCTGGACGTCTACATTTGGAGGCGCACTCATTGGCAGGTAG

>Glyma13g32320.3   sequence type=CDS   gene model=Glyma13g32320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGGATTTTCAAGCTGCTATCTGTGGTGAAAATTGGTGGAATAATATTAATCCAACAAGAAGTGTCTTTCCTCTTATGCCATCAACTTGTTCGGTGGCAGCAGCTGATCATGCAGGAAACTACAGCACTTGGCAAAGTACTACTGATTTCGTTGATTTGAAGGGAACAAGGTCTTGTGCTGAGCTGGAGACTGATAATAACTTGAGTTTTCTTGATGCTGAGAAGCCACAGCAGAGTGAAAGTGGTAGCATCTTGATCAATTCCACCTTACAAATGATGGGTTTTGGCAAGTCATCTTCAACTTCATCGAATTGGAATCAATCTTTATTAGGGAGCGGTTTTGATTCTGTGCTTCAAGAAGAAACAGGCATAGGTGGTGGCAGCCAAGTTTCCACCGTTGATGCTTTGAAGCCAATGAACCAAGAATTTTCCTTGGATCAGCAGAGTCTGAATTCTGTTGTTACAAGCACTGGATCATTATCTGGTGGTTTCCCAGTTGTTTCAGCCTCCTATGGTTACCCTTCAACATTGATACAAAGCTTATATGAGCCTGAGCCTCAACCACAACAACAGAACTCACTTTTCACCAACCCCTCCATGTCCTACTCATCATCTTCCGCAAACTATGGGATATGTTCCAATGAACTGTCACCAACTTGGTCCAAAGTTTCTTCCCTTCCCAAACCCTCAATGCCAAAGCAACAGCTCAGTGGATTGCACTTTTCCAACAACACTGCTTTCTGGAATTCTTCAGCCGAAGCACTTAATGACATAAGAGCAGGTGTTTTTACTTCATCACAAGCCCAATATCAAACGGCAAAATTTGAAGAGAAACCCAACTGCCCCAATACTCTATTAAACAAGCTCAAGAGAGAAGAATCACCAGACGCAGCGAAGAAAAATTCTCCTGAGCCTGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTTAGGAAAGAAAAGCTGGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGATACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTCCATGACCAAGTTTTGAGCACTCCATATATGAAAAACAACGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGACTCAGAAGGGGCAAAACAAGATTTGAGAAGCCGAGGGCTGTGTTTGGTGCCGATTTCAAGCACATTCCCAGTGGCTAATGAGACCAGTGTTGATTTCTGGACGTCTACATTTGGAGGCGCACTCATTGGCAGGTAG

Predicted protein sequences of Glyma13g32320

Limit To All Plant Sequences

>Glyma13g32320.2   sequence type=predicted peptide   gene model=Glyma13g32320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEDFQAAICGENWWNNINPTRSVFPLMPSTCSVAAADHAGNYSTWQSTTDFVDLKGTRSCAELETDNNLSFLDAEKPQQSESGSILINSTLQMMGFGKSSSTSSNWNQSLLGSGFDSVLQEETGIGGGSQVSTVDALKPMNQEFSLDQQSLNSVVTSTGSLSGGFPVVSASYGYPSTLIQSLYEPEPQPQQQNSLFTNPSMSYSSSSANYGICSNELSPTWSKVSSLPKPSMPKQQLSGLHFSNNTAFWNSSAEALNDIRAGVFTSSQAQYQTAKFEEKPNCPNTLLNKLKREESPDAAKKNSPEPAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSTPYMKNNGAPIQHQQDCDNLKDSEGAKQDLRSRGLCLVPISSTFPVANETSVDFWTSTFGGALIGR*

>Glyma13g32320.3   sequence type=predicted peptide   gene model=Glyma13g32320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEDFQAAICGENWWNNINPTRSVFPLMPSTCSVAAADHAGNYSTWQSTTDFVDLKGTRSCAELETDNNLSFLDAEKPQQSESGSILINSTLQMMGFGKSSSTSSNWNQSLLGSGFDSVLQEETGIGGGSQVSTVDALKPMNQEFSLDQQSLNSVVTSTGSLSGGFPVVSASYGYPSTLIQSLYEPEPQPQQQNSLFTNPSMSYSSSSANYGICSNELSPTWSKVSSLPKPSMPKQQLSGLHFSNNTAFWNSSAEALNDIRAGVFTSSQAQYQTAKFEEKPNCPNTLLNKLKREESPDAAKKNSPEPAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVLSTPYMKNNGAPIQHQQDCDNLKDSEGAKQDLRSRGLCLVPISSTFPVANETSVDFWTSTFGGALIGR*

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