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Report for Sequence Feature Glyma13g32200

Feature Type:gene_model
Chromosome:Gm13
Start:34436122
stop:34437927
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g32200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78955AT Annotation by Michelle Graham. TAIR10: camelliol C synthase 1 | chr1:29689153-29694255 REVERSE LENGTH=769 SoyBaseE_val: 1.00E-76ISS
GO:0042300GO-mf Annotation by Michelle Graham. GO Molecular Function: beta-amyrin synthase activity SoyBaseN/AISS
GO:0090438GO-mf Annotation by Michelle Graham. GO Molecular Function: camelliol C synthase activity SoyBaseN/AISS
PTHR11764Panther SQUALENE CYCLASES-RELATED JGI ISS
PTHR11764:SF3Panther CYCLOARTENOL SYNTHASE-RELATED JGI ISS
PF00432PFAM Prenyltransferase and squalene oxidase repeat JGI ISS
UniRef100_I1M2E6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M2E6_SOYBN SoyBaseE_val: 1.00E-160ISS
UniRef100_O82140UniRef Annotation by Michelle Graham. Most informative UniRef hit: Beta-Amyrin Synthase 1 n=1 Tax=Panax ginseng RepID=BAMS1_PANGI SoyBaseE_val: 2.00E-85ISS

Expression Patterns of Glyma13g32200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g32200 not represented in the dataset
Glyma13g32200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g32200
ParalogEvidenceComments
Glyma15g07110 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g32200 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma13g32200
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g32200
>Glyma13g32200.1   sequence type=CDS   gene model=Glyma13g32200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATCGTGGGAGAAAAAAATAGAACTTAAAAAGTTATATGATTTAGTCAATTTCATATTATCACTTCAGAGTAAAAATGGAGGTATGACTGCATGGGAGCCCGCAGGAACTCAAAAATGGTTGGAATTACTCAATCCTATGGAATTTTTTGCTGACATAGTAGTTGAGCACGAATATATTGAATGCACTGCATCAGCAATTCAGGCTTTAAACTTCATTGCTAAAGCAGTAACATTCATGGAAGATACACAATTAGAGGATGGTTCTTGGTATGAAAATTGGGCAGTTTGCTTCACTTACAGCTCTTGGTTTGCACTTGGAGGTCTATTTGCTTTTAAGACTTATAAAAATTGTGTTACTATTCGTAGAGCTGTGAAATTTCTACTCAAAATACAAAATAAGGATGGTGGGTGGGGAGAGAGTTATCTTTCTTGCCCAAGGAAGTTTAGAAGTCGAACAAATATTGTACAAACAGCTTGGGCTTTAATGGCTCTAATTCATGTCGAGAGAGATCCAACTCCCCTTCACAATGCAGCAAATATACTTGAGAAATTGTTTGGTTCATTACGTACCCATTCTATATATAGAAATGTTTTCCCAAGATGGGCTTTGGCTGAATATCGCGCAAATGTTTTATTGCCTTCCATTACTATTTAA
Predicted protein sequences of Glyma13g32200
>Glyma13g32200.1   sequence type=predicted peptide   gene model=Glyma13g32200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ISWEKKIELKKLYDLVNFILSLQSKNGGMTAWEPAGTQKWLELLNPMEFFADIVVEHEYIECTASAIQALNFIAKAVTFMEDTQLEDGSWYENWAVCFTYSSWFALGGLFAFKTYKNCVTIRRAVKFLLKIQNKDGGWGESYLSCPRKFRSRTNIVQTAWALMALIHVERDPTPLHNAANILEKLFGSLRTHSIYRNVFPRWALAEYRANVLLPSITI*






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