Glyma13g32170 - SoyBase

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Report for Sequence Feature Glyma13g32170

Feature Type:	gene_model
Chromosome:	Gm13
Start:	34418979
stop:	34423034
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g32170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28120	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubiquitin thioesterase Otubain (InterPro:IPR016615), Peptidase C65, otubain (InterPro:IPR019400); Has 413 Blast hits to 411 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 83; Plants - 88; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). \| chr1:9813219-9815143 REVERSE LENGTH=306	SoyBase	E_val: 5.00E-149	ISS
GO:0019538	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008242	GO-mf	Annotation by Michelle Graham. GO Molecular Function: omega peptidase activity	SoyBase	N/A	ISS
KOG3991	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12931	Panther	UBIQUITIN THIOLESTERASE PROTEIN OTUB	JGI		ISS
PTHR12931:SF10	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF10275	PFAM	Peptidase C65 Otubain	JGI		ISS
UniRef100_G7ILC2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin thioesterase otubain-like protein n=1 Tax=Medicago truncatula RepID=G7ILC2_MEDTR	SoyBase	E_val: 8.00E-176	ISS
UniRef100_I1M2E2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M2E2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g32170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g32170

Paralog	Evidence	Comments
Glyma15g07130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g32170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g248100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g32170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g32170

Limit To All Plant Sequences

>Glyma13g32170.4   sequence type=transcript   gene model=Glyma13g32170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCACTATAAAACGCTAACGCTTATGCGTTTCGCATCTGTTGGGAATTTAGGGATTTGCTTTTACTGATCTCAGTCTTCCACCTCACTGTCCTAGATTGTGGGGTTTCTCTTTTCAGTTCTCATCGTAACTACCATAGTTGCTGCTCCGAAAAGGGTTTTCCTAACACCGCCCATGCAATCAATTTCCGGGTTGTACAATTCGTGAATAGGTTGTTGCTTGTTCTGAAAAGTAGTGGATAGTAAAAAATATTGAACTTTTTTTGAGAGAAAAATGCAGAGTAAAGAAGCTGTTGTGGAAGATGGGGAAATAAAGAGTGTGACTGCTGTAGGGTCTGAAATTGATGGGTGGACCAATTTTGGGGACGATGACATAATGCAGCAGCAGTATACAATTCAGTCTGAAGAGGCTAAGAAAGTTCCATTTGTGGGCGACAAGGAACCACTGAGTAGCTTAGCTGCTGAATATAAATCAGGCAGTCCTATCTTGCTGGAGAAAATAAAGGTGCTTGATGAGCAATACGCTGCCATTCGTCGTACTCGAGGAGATGGAAACTGCTTCTTTCGAAGCTTTATGTTTTCATATCTTGAGCATGTTATGAAATGTCAAGACCAAGCAGAAGTTGATCGTATCCAAGCCAATGTTGAAAAAAGTAGAAAAGCACTGCAGACCTTGGGTTATGCAGACTTGACTTTTGAAGATTTTTTTGCGTTATTCCTTGAGCAGCTGGAATCTGTTATTCAAGGGAAAGAGACTTCCATAAGTCATGAAGAGCTTGTTCTTAGAAGCCGAGATCAGTCAGTATCTGATTATGTCGTTATGTTCTTCAGATTTGTTACCTCTGCCGCAATACAAAAGCGCACAGAATTTTTTGAACCATTCATACTAGGCTTAACTAATACAACGGTCGAGCAGTTTTGCAAATCATCTGTTGAACCAATGGGTGAAGAGAGCGACCATGTGCACATTACTGCCCTTTCAGATGCATTGGGCATTCCAGTCCGTGTTGTGTACCTTGACCGCAGCTCAAGTGATACTGGTGGTGTCAGTGTAAATCATCATGATTTCATGCCAGTGGCTGGTGATCTCCCAAATGCTAGTTGCAGCTCTGAAAAGAACATTCCTTTCATCACACTACTATATCGTCCTGGTCACTATGACATCCTCTATCCAAAATGATGACTTTTTTGGGGAAAAGACCCTTTCTTTGTTACTTTTTTGGTGGTGGTGTGGAGCCGCAACAGCTCTGCACTCAGCCCGGTTGCTATAGGACATGTGTGGTCTGTACCTTGTTAATGTTGAATGGTCAATTTTCTTGAACGTTACCTGTTTAGAAGAGATTGATCAACAAAGTACGTCAACATTAACACGCTAACAATTTAAAACCCAGCTTGATGTTTGCTGCTTTACATGTTATCCATGATTTCATTGTTCTCAATATCTCTCCATGGGGGTTTAGTGATTAGTGTAATAGCATGGCTCCTTGTAGCTTCTGTAGAATGAAGCACGTGCATTATCTCAATGGCAATGGCAATGGCAGTTTCTGTTTTGCATGTGTGCTCATTTGTTACACAATAATATTGCACAAATGATCATTTTATCATTACCGTGTAGAACTTATGGATAATATAGCTCTTTGATGACTATAGGGGACTTATATATTGATAGGTTGGATAATTAATCTTGACTTAATTATAGATGGTTAAGATTGTTTTATTTGAATCCAATCTTGACTATCCATTGCGATTGTAT

Coding sequences of Glyma13g32170

Limit To All Plant Sequences

>Glyma13g32170.3   sequence type=CDS   gene model=Glyma13g32170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAGTAAAGAAGCTGTTGTGGAAGATGGGGAAATAAAGAGTGTGACTGCTGTAGGGTCTGAAATTGATGGGTGGACCAATTTTGGGGACGATGACATAATGCAGCAGCAGTATACAATTCAGTCTGAAGAGGCTAAGAAAGTTCCATTTGTGGGCGACAAGGAACCACTGAGTAGCTTAGCTGCTGAATATAAATCAGGCAGTCCTATCTTGCTGGAGAAAATAAAGGTGCTTGATGAGCAATACGCTGCCATTCGTCGTACTCGAGGAGATGGAAACTGCTTCTTTCGAAGCTTTATGTTTTCATATCTTGAGCATGTTATGAAATGTCAAGACCAAGCAGAAGTTGATCGTATCCAAGCCAATGTTGAAAAAAGTAGAAAAGCACTGCAGACCTTGGGTTATGCAGACTTGACTTTTGAAGATTTTTTTGCGTTATTCCTTGAGCAGCTGGAATCTGTTATTCAAGGGAAAGAGACTTCCATAAGTCATGAAGAGCTTGTTCTTAGAAGCCGAGATCAGTCAGTATCTGATTATGTCGTTATGTTCTTCAGATTTGTTACCTCTGCCGCAATACAAAAGCGCACAGAATTTTTTGAACCATTCATACTAGGCTTAACTAATACAACGGTCGAGCAGTTTTGCAAATCATCTGTTGAACCAATGGGTGAAGAGAGCGACCATGTGCACATTACTGCCCTTTCAGATGCATTGGGCATTCCAGTCCGTGTTGTGTACCTTGACCGCAGCTCAAGTGATACTGGTGGTGTCAGTGTAAATCATCATGATTTCATGCCAGTGGCTGGTGATCTCCCAAATGCTAGTTGCAGCTCTGAAAAGAACATTCCTTTCATCACACTACTATATCGTCCTGGTCACTATGACATCCTCTATCCAAAATGA

>Glyma13g32170.4   sequence type=CDS   gene model=Glyma13g32170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAGTAAAGAAGCTGTTGTGGAAGATGGGGAAATAAAGAGTGTGACTGCTGTAGGGTCTGAAATTGATGGGTGGACCAATTTTGGGGACGATGACATAATGCAGCAGCAGTATACAATTCAGTCTGAAGAGGCTAAGAAAGTTCCATTTGTGGGCGACAAGGAACCACTGAGTAGCTTAGCTGCTGAATATAAATCAGGCAGTCCTATCTTGCTGGAGAAAATAAAGGTGCTTGATGAGCAATACGCTGCCATTCGTCGTACTCGAGGAGATGGAAACTGCTTCTTTCGAAGCTTTATGTTTTCATATCTTGAGCATGTTATGAAATGTCAAGACCAAGCAGAAGTTGATCGTATCCAAGCCAATGTTGAAAAAAGTAGAAAAGCACTGCAGACCTTGGGTTATGCAGACTTGACTTTTGAAGATTTTTTTGCGTTATTCCTTGAGCAGCTGGAATCTGTTATTCAAGGGAAAGAGACTTCCATAAGTCATGAAGAGCTTGTTCTTAGAAGCCGAGATCAGTCAGTATCTGATTATGTCGTTATGTTCTTCAGATTTGTTACCTCTGCCGCAATACAAAAGCGCACAGAATTTTTTGAACCATTCATACTAGGCTTAACTAATACAACGGTCGAGCAGTTTTGCAAATCATCTGTTGAACCAATGGGTGAAGAGAGCGACCATGTGCACATTACTGCCCTTTCAGATGCATTGGGCATTCCAGTCCGTGTTGTGTACCTTGACCGCAGCTCAAGTGATACTGGTGGTGTCAGTGTAAATCATCATGATTTCATGCCAGTGGCTGGTGATCTCCCAAATGCTAGTTGCAGCTCTGAAAAGAACATTCCTTTCATCACACTACTATATCGTCCTGGTCACTATGACATCCTCTATCCAAAATGA

Predicted protein sequences of Glyma13g32170

Limit To All Plant Sequences

>Glyma13g32170.3   sequence type=predicted peptide   gene model=Glyma13g32170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSKEAVVEDGEIKSVTAVGSEIDGWTNFGDDDIMQQQYTIQSEEAKKVPFVGDKEPLSSLAAEYKSGSPILLEKIKVLDEQYAAIRRTRGDGNCFFRSFMFSYLEHVMKCQDQAEVDRIQANVEKSRKALQTLGYADLTFEDFFALFLEQLESVIQGKETSISHEELVLRSRDQSVSDYVVMFFRFVTSAAIQKRTEFFEPFILGLTNTTVEQFCKSSVEPMGEESDHVHITALSDALGIPVRVVYLDRSSSDTGGVSVNHHDFMPVAGDLPNASCSSEKNIPFITLLYRPGHYDILYPK*

>Glyma13g32170.4   sequence type=predicted peptide   gene model=Glyma13g32170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSKEAVVEDGEIKSVTAVGSEIDGWTNFGDDDIMQQQYTIQSEEAKKVPFVGDKEPLSSLAAEYKSGSPILLEKIKVLDEQYAAIRRTRGDGNCFFRSFMFSYLEHVMKCQDQAEVDRIQANVEKSRKALQTLGYADLTFEDFFALFLEQLESVIQGKETSISHEELVLRSRDQSVSDYVVMFFRFVTSAAIQKRTEFFEPFILGLTNTTVEQFCKSSVEPMGEESDHVHITALSDALGIPVRVVYLDRSSSDTGGVSVNHHDFMPVAGDLPNASCSSEKNIPFITLLYRPGHYDILYPK*

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