Glyma13g32100 - SoyBase

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Report for Sequence Feature Glyma13g32100

Feature Type:	gene_model
Chromosome:	Gm13
Start:	34369334
stop:	34374005
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g32100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11390	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr1:3834762-3837305 REVERSE LENGTH=624	SoyBase	E_val: 0	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1236	KOG	Predicted unusual protein kinase	JGI		ISS
PTHR10566	Panther	CHAPERONE-ACTIVITY OF BC1 COMPLEX (CABC1)-RELATED	JGI		ISS
PTHR10566:SF23	Panther	ABC TRANSPORTER - RELATED	JGI		ISS
PF03109	PFAM	ABC1 family	JGI		ISS
UniRef100_Q2HTV1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AarF domain-containing protein kinase, putative n=1 Tax=Medicago truncatula RepID=Q2HTV1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0001D16406	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001D16406 related cluster n=1 Tax=unknown RepID=UPI0001D16406	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g32100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g32100

Paralog	Evidence	Comments
Glyma15g07220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g32100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g247300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g32100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g32100

Limit To All Plant Sequences

>Glyma13g32100.2   sequence type=transcript   gene model=Glyma13g32100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAAATATTGCTTTCCATTTTTGGAAAGAAATGAAATGAATTTCTTGGGCCTTAGGGTTTGTATTGGTTATGACCGCCTCTAACTTAAAGACAAGACAGACGTGTTCTTGCAATCGCACAAAACTGAGGCTCACCTCCTTAATCGCTCGTTACGTCTTCCATTCCATTTCATTTCTTCAATACACCATAGCATGTTCTCTTCCTTCTCAGGCGGTAAATAAGTGGAAATGAGAGGTAATACCGGCAAAGTAGGAATGAATTGGGACTCCAAAAAATCAGGAACTTATAGTGGGACATATTATAAGCTGGATCAACTGAGTTTTCGTCTTGTTGATGCCTCTTGGAGGAATGGACGTTGTGTACACTCGTGTAAAATTTAATGCTCATCTACATGTATACCTATTATGGTCATGAGTGAAGAGAAGTCACTATATTTGATGCTTAGAAATATAAGGAGAGCTGCCCAGTCTGTTTGTAGAATCAATAGCAGATACCTGGAAGTGAGTAAAAATGGGCCAGTTGTCTCAGTTGGACCGAATATCCACCACTGCCGGTTGTACATGCAATATAAGTTTCCAAGTGAAGCATGCAGTTCATTCTTGTGGCATGGGACAAGGGAAGGCTTTCGTAAACGTGGTTCTTTCAGGAACTTTTCTGTAACCTCAGCAAGTAATACAGTCACGCACCATTCCCAGATTGCTTGGAAAAGGCTGTACAGAAAGTATTGTTCCAGTGGTGATGGTACATTTCCTCCTACCGTAAATATGATTGCTCAGGCAGTAAGCTTGGCTTTGGCTCGTTCTTATTTGCTAGTTCCTGGTATTTTGGCATTTACATGTGGAGAGCTTGCATTAGCTCAGCAAAATTGGGCAGATGCAGAACGTTACCCATCACAGAATGGTTTGTATATGCGTGCACAAGATGGGTATAATTACATGTTTACATTTGCATTCATAATAGTTGAAGGACTTATCTTATTGATGAGGGCTCTCTATCTGGCAATATTATTCTCTCCTAGCATTGTGATGGCACCATTTGCAGATTGTTTTGGACCAAACTTTAGGAAACTGTGGCTCCATGTAGTTCATCGCACACTAGAAAAATCAGGTCCAGCATTCATAAAATGGGGTCAGTGGGCAGCTACACGGCCTGATCTCTTTCCTCGAGATCTATGCACTAAGCTTTCAGAACTTCATACCAAAGCTCCTGAGCATAGTTTCTGCTACACAAAGAAAACTATAGAAAGAGCATTTGGCCGAAAAATTTCTGAAATTTTTGACAATTTTGAAGAACTTCCTGTTGCATCTGGAAGCATTGCTCAAGTTCACCGTGCTTCACTAAAATGTCGTTATCCTGGTCAGCAGGCAAAGCCACTATTGGTTGCAGTTAAGGTTAGACATCCTGGCGTGGGAGAGTCAATTAGACGGGATTTTGCTATTATTAATTTGGCGGCAAAAATTTCAAAGTTCATTCCTGCTCTTAATTGGTTACGATTAGATGAGAGTGTACAACAATTTGCAGTTTTCATGATGTCTCAAGTTGACCTTGCTAGGGAAGCTGCCCATTTGAGTCGCTTTATTTATAATTTCCGTAGATGGAAGGATGTTTCTTTCCCCAAGCCTGTCTATCCACTTGTGCACCCGGCTGTTTTGGTGGAAACATATGAAAAGGGTGAAAGTGTCTCATATTATGTTGATGATCTTCAAGGACATGAACGGGTTAAATCTGCTCTTGCCCACATTGGTACTCATGCACTTTTGAAAATGCTTCTGGTGGACAACTTCATTCATGCAGATATGCATCCTGGAAATATCCTTGTTCGAGTGTCTCAGAACAAGTCTCGAAAACGGCTCTTCAAATCAAAGCCTCATGTAGTTTTCCTTGATGTAGGCATGACTGCCGAACTCTCTGGTAGTGATAGAGTAAATTTACTGGAATTTTTTAAAGCTGTTGCCCGCCGAGATGGCCGGACTGCTGCAGAATGTGCCCTGAACTTGTCAAATCAACAGAACTGTCCAAATCCGGAGGCCTTCATTGAGGAGGTGGAAGAGTCATTTACTTTTTGGGGCACCCCAGAAGGTGATATTGTTCATCCTGCAGAGTGCATGGAACAATTACTTGAGAAAGTTAGGCGTCATAGAGTTAATATTGATGGCAATGTTTGTACTGTCATGGTGACAACCTTAGTTCTTGAGGGTTGGCAGCGAAAACTTGATCCTGGGTACAATGTGATGCAGACATTGCAGACATTGCTACTTAGAGCTGATTGGGCAAAGTCTCTTTCGTACACAATTGACGGACTCATGGCCCCTTAGGGAGGAGGAAGTTTCTTTCTTTGTTGAGGCTCTCTCTTGAGAAACAATTTTGACTAACATAAAAACCCAAAACAAAAACATCTGTCCTAAGGGCTCTCTCACATTTGTTTTTTTATTTAATTTTTTTAAAGATTTATCCCTTGTATTTATCTTGGTTAATTTCCAAGTTATTTTTGTGAGCGTCACAGTTTACAACAAAAATGGAAGTAGAAACAATAAAACGGTGAATATATCTCCTCTCCCTTCTTTACTCGCAGGATGAATGAACGATATAGTTAGACCCT

Coding sequences of Glyma13g32100

Limit To All Plant Sequences

>Glyma13g32100.1   sequence type=CDS   gene model=Glyma13g32100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTAGAAATATAAGGAGAGCTGCCCAGTCTGTTTGTAGAATCAATAGCAGATACCTGGAAGTGAGTAAAAATGGGCCAGTTGTCTCAGTTGGACCGAATATCCACCACTGCCGGTTGTACATGCAATATAAGTTTCCAAGTGAAGCATGCAGTTCATTCTTGTGGCATGGGACAAGGGAAGGCTTTCGTAAACGTGGTTCTTTCAGGAACTTTTCTGTAACCTCAGCAAGTAATACAGTCACGCACCATTCCCAGATTGCTTGGAAAAGGCTGTACAGAAAGTATTGTTCCAGTGGTGATGGTACATTTCCTCCTACCGTAAATATGATTGCTCAGGCAGTAAGCTTGGCTTTGGCTCGTTCTTATTTGCTAGTTCCTGGTATTTTGGCATTTACATGTGGAGAGCTTGCATTAGCTCAGCAAAATTGGGCAGATGCAGAACGTTACCCATCACAGAATGGTTTGTATATGCGTGCACAAGATGGGTATAATTACATGTTTACATTTGCATTCATAATAGTTGAAGGACTTATCTTATTGATGAGGGCTCTCTATCTGGCAATATTATTCTCTCCTAGCATTGTGATGGCACCATTTGCAGATTGTTTTGGACCAAACTTTAGGAAACTGTGGCTCCATGTAGTTCATCGCACACTAGAAAAATCAGGTCCAGCATTCATAAAATGGGGTCAGTGGGCAGCTACACGGCCTGATCTCTTTCCTCGAGATCTATGCACTAAGCTTTCAGAACTTCATACCAAAGCTCCTGAGCATAGTTTCTGCTACACAAAGAAAACTATAGAAAGAGCATTTGGCCGAAAAATTTCTGAAATTTTTGACAATTTTGAAGAACTTCCTGTTGCATCTGGAAGCATTGCTCAAGTTCACCGTGCTTCACTAAAATGTCGTTATCCTGGTCAGCAGGCAAAGCCACTATTGGTTGCAGTTAAGGTTAGACATCCTGGCGTGGGAGAGTCAATTAGACGGGATTTTGCTATTATTAATTTGGCGGCAAAAATTTCAAAGTTCATTCCTGCTCTTAATTGGTTACGATTAGATGAGAGTGTACAACAATTTGCAGTTTTCATGATGTCTCAAGTTGACCTTGCTAGGGAAGCTGCCCATTTGAGTCGCTTTATTTATAATTTCCGTAGATGGAAGGATGTTTCTTTCCCCAAGCCTGTCTATCCACTTGTGCACCCGGCTGTTTTGGTGGAAACATATGAAAAGGGTGAAAGTGTCTCATATTATGTTGATGATCTTCAAGGACATGAACGGGTTAAATCTGCTCTTGCCCACATTGGTACTCATGCACTTTTGAAAATGCTTCTGGTGGACAACTTCATTCATGCAGATATGCATCCTGGAAATATCCTTGTTCGAGTGTCTCAGAACAAGTCTCGAAAACGGCTCTTCAAATCAAAGCCTCATGTAGTTTTCCTTGATGTAGGCATGACTGCCGAACTCTCTGGTAGTGATAGAGTAAATTTACTGGAATTTTTTAAAGCTGTTGCCCGCCGAGATGGCCGGACTGCTGCAGAATGTGCCCTGAACTTGTCAAATCAACAGAACTGTCCAAATCCGGAGGCCTTCATTGAGGAGGTGGAAGAGTCATTTACTTTTTGGGGCACCCCAGAAGGTGATATTGTTCATCCTGCAGAGTGCATGGAACAATTACTTGAGAAAGTTAGGCGTCATAGAGTTAATATTGATGGCAATGTTTGTACTGTCATGGTGACAACCTTAGTTCTTGAGGGTTGGCAGCGAAAACTTGATCCTGGGTACAATGTGATGCAGACATTGCAGACATTGCTACTTAGAGCTGATTGGGCAAAGTCTCTTTCGTACACAATTGACGGACTCATGGCCCCTTAG

>Glyma13g32100.2   sequence type=CDS   gene model=Glyma13g32100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCATGAGTGAAGAGAAGTCACTATATTTGATGCTTAGAAATATAAGGAGAGCTGCCCAGTCTGTTTGTAGAATCAATAGCAGATACCTGGAAGTGAGTAAAAATGGGCCAGTTGTCTCAGTTGGACCGAATATCCACCACTGCCGGTTGTACATGCAATATAAGTTTCCAAGTGAAGCATGCAGTTCATTCTTGTGGCATGGGACAAGGGAAGGCTTTCGTAAACGTGGTTCTTTCAGGAACTTTTCTGTAACCTCAGCAAGTAATACAGTCACGCACCATTCCCAGATTGCTTGGAAAAGGCTGTACAGAAAGTATTGTTCCAGTGGTGATGGTACATTTCCTCCTACCGTAAATATGATTGCTCAGGCAGTAAGCTTGGCTTTGGCTCGTTCTTATTTGCTAGTTCCTGGTATTTTGGCATTTACATGTGGAGAGCTTGCATTAGCTCAGCAAAATTGGGCAGATGCAGAACGTTACCCATCACAGAATGGTTTGTATATGCGTGCACAAGATGGGTATAATTACATGTTTACATTTGCATTCATAATAGTTGAAGGACTTATCTTATTGATGAGGGCTCTCTATCTGGCAATATTATTCTCTCCTAGCATTGTGATGGCACCATTTGCAGATTGTTTTGGACCAAACTTTAGGAAACTGTGGCTCCATGTAGTTCATCGCACACTAGAAAAATCAGGTCCAGCATTCATAAAATGGGGTCAGTGGGCAGCTACACGGCCTGATCTCTTTCCTCGAGATCTATGCACTAAGCTTTCAGAACTTCATACCAAAGCTCCTGAGCATAGTTTCTGCTACACAAAGAAAACTATAGAAAGAGCATTTGGCCGAAAAATTTCTGAAATTTTTGACAATTTTGAAGAACTTCCTGTTGCATCTGGAAGCATTGCTCAAGTTCACCGTGCTTCACTAAAATGTCGTTATCCTGGTCAGCAGGCAAAGCCACTATTGGTTGCAGTTAAGGTTAGACATCCTGGCGTGGGAGAGTCAATTAGACGGGATTTTGCTATTATTAATTTGGCGGCAAAAATTTCAAAGTTCATTCCTGCTCTTAATTGGTTACGATTAGATGAGAGTGTACAACAATTTGCAGTTTTCATGATGTCTCAAGTTGACCTTGCTAGGGAAGCTGCCCATTTGAGTCGCTTTATTTATAATTTCCGTAGATGGAAGGATGTTTCTTTCCCCAAGCCTGTCTATCCACTTGTGCACCCGGCTGTTTTGGTGGAAACATATGAAAAGGGTGAAAGTGTCTCATATTATGTTGATGATCTTCAAGGACATGAACGGGTTAAATCTGCTCTTGCCCACATTGGTACTCATGCACTTTTGAAAATGCTTCTGGTGGACAACTTCATTCATGCAGATATGCATCCTGGAAATATCCTTGTTCGAGTGTCTCAGAACAAGTCTCGAAAACGGCTCTTCAAATCAAAGCCTCATGTAGTTTTCCTTGATGTAGGCATGACTGCCGAACTCTCTGGTAGTGATAGAGTAAATTTACTGGAATTTTTTAAAGCTGTTGCCCGCCGAGATGGCCGGACTGCTGCAGAATGTGCCCTGAACTTGTCAAATCAACAGAACTGTCCAAATCCGGAGGCCTTCATTGAGGAGGTGGAAGAGTCATTTACTTTTTGGGGCACCCCAGAAGGTGATATTGTTCATCCTGCAGAGTGCATGGAACAATTACTTGAGAAAGTTAGGCGTCATAGAGTTAATATTGATGGCAATGTTTGTACTGTCATGGTGACAACCTTAGTTCTTGAGGGTTGGCAGCGAAAACTTGATCCTGGGTACAATGTGATGCAGACATTGCAGACATTGCTACTTAGAGCTGATTGGGCAAAGTCTCTTTCGTACACAATTGACGGACTCATGGCCCCTTAG

Predicted protein sequences of Glyma13g32100

Limit To All Plant Sequences

>Glyma13g32100.1   sequence type=predicted peptide   gene model=Glyma13g32100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRNIRRAAQSVCRINSRYLEVSKNGPVVSVGPNIHHCRLYMQYKFPSEACSSFLWHGTREGFRKRGSFRNFSVTSASNTVTHHSQIAWKRLYRKYCSSGDGTFPPTVNMIAQAVSLALARSYLLVPGILAFTCGELALAQQNWADAERYPSQNGLYMRAQDGYNYMFTFAFIIVEGLILLMRALYLAILFSPSIVMAPFADCFGPNFRKLWLHVVHRTLEKSGPAFIKWGQWAATRPDLFPRDLCTKLSELHTKAPEHSFCYTKKTIERAFGRKISEIFDNFEELPVASGSIAQVHRASLKCRYPGQQAKPLLVAVKVRHPGVGESIRRDFAIINLAAKISKFIPALNWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEKGESVSYYVDDLQGHERVKSALAHIGTHALLKMLLVDNFIHADMHPGNILVRVSQNKSRKRLFKSKPHVVFLDVGMTAELSGSDRVNLLEFFKAVARRDGRTAAECALNLSNQQNCPNPEAFIEEVEESFTFWGTPEGDIVHPAECMEQLLEKVRRHRVNIDGNVCTVMVTTLVLEGWQRKLDPGYNVMQTLQTLLLRADWAKSLSYTIDGLMAP*

>Glyma13g32100.2   sequence type=predicted peptide   gene model=Glyma13g32100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVMSEEKSLYLMLRNIRRAAQSVCRINSRYLEVSKNGPVVSVGPNIHHCRLYMQYKFPSEACSSFLWHGTREGFRKRGSFRNFSVTSASNTVTHHSQIAWKRLYRKYCSSGDGTFPPTVNMIAQAVSLALARSYLLVPGILAFTCGELALAQQNWADAERYPSQNGLYMRAQDGYNYMFTFAFIIVEGLILLMRALYLAILFSPSIVMAPFADCFGPNFRKLWLHVVHRTLEKSGPAFIKWGQWAATRPDLFPRDLCTKLSELHTKAPEHSFCYTKKTIERAFGRKISEIFDNFEELPVASGSIAQVHRASLKCRYPGQQAKPLLVAVKVRHPGVGESIRRDFAIINLAAKISKFIPALNWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEKGESVSYYVDDLQGHERVKSALAHIGTHALLKMLLVDNFIHADMHPGNILVRVSQNKSRKRLFKSKPHVVFLDVGMTAELSGSDRVNLLEFFKAVARRDGRTAAECALNLSNQQNCPNPEAFIEEVEESFTFWGTPEGDIVHPAECMEQLLEKVRRHRVNIDGNVCTVMVTTLVLEGWQRKLDPGYNVMQTLQTLLLRADWAKSLSYTIDGLMAP*

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