SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g32050

Feature Type:gene_model
Chromosome:Gm13
Start:34339464
stop:34342189
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g32050
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G21450AT Annotation by Michelle Graham. TAIR10: PapD-like superfamily protein | chr4:11426136-11428125 FORWARD LENGTH=295 SoyBaseE_val: 8.00E-70ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0032880GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein localization SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005198GO-mf Annotation by Michelle Graham. GO Molecular Function: structural molecule activity SoyBaseN/AISS
PTHR10809Panther VESICLE-ASSOCIATED MEMBRANE PROTEIN (VAMP) JGI ISS
PF00635PFAM MSP (Major sperm protein) domain JGI ISS
UniRef100_I1M2D2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M2D2_SOYBN SoyBaseE_val: 3.00E-96ISS
UniRef100_Q2HTV7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Major sperm protein n=1 Tax=Medicago truncatula RepID=Q2HTV7_MEDTR SoyBaseE_val: 5.00E-73ISS

Expression Patterns of Glyma13g32050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g32050 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g246800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g32050
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma13g32050
>Glyma13g32050.4   sequence type=transcript   gene model=Glyma13g32050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCGCGGACTTAAGTTGTTAGAATTAGTTAGTGGGACCCGACACTGAAGCTTTGTCTTTAGAGATAGGGTCGACGACCACGTTGCTGCATCCCGTGCGTGGAAGTCATGGAAAAATCAGGCACAACAATCTAAAGGCAAAGTCTGGAATTTGTTCAAGCTTCGCTTTCTCACACCTCCAACTCTGTTTCTTCCCTTGCCAGATCGCTCCTCCCCGCACCTCGTCGTCTTAAGCTTCATCCTTCCAACAAGCTCTACTTCCCTTAGCCGGGCAAGCAGGCTAAGAGTGCCGTCAGGATTAAAAACACCAGCAAATCCAATGTAGCTTTCAAGGTATACTCAAACAAACATTTTCAAACAAATGCACCCAAGAGCTGTTTCATGCGACCTCCTGGGGGAATTCTAGCACCTGGCGAGAGTATAATTGCAACTGTGTTCAAGTTTATAGAGCATCCACTGAATAATGAAAAGCCACAAAAAACTGGAGTCAAATTTAAAATCACGAGCTTGAAGGTCAAAGGACCAATTGATTATGTCCCTGAAATGTTTGATGAGCTGAAGGATCAAGTAACAGTGGAGCAGATTTTGCAGGTTGTTTTTCTGGATCCAGAGCGTAGCTGTCCTGCTTTGGAAAAACTGAAGCTTCAGCTGGCTGAGGCTGATGCTGCTGTTGTTGAGGCACGTAAGAGAGCCCCAGAAGATGCAGGTCCTAAGATTCTCGGCGAAGGGCTTGTCATAGATGAATGGAAAGAGAGGAGGGAAAGATACCTGGCCAAGCAGCAGGGTGAAGTAGTAGTGGACTCTATATAGCTAAGTTTGAGTAGGAAATTGCGTTACTGCGGGGAAGATGACTTTAGGGAAACAATTATATTTAATCACAAAGTTTGGCTTAGAGAAAATTGTGGTGAATAAGTGTGAAGTCTCCTTTTGAGGAAACTATGATTGGATGAGAACATCCCCTGTTATGTACATAAGTGTCAGTGTCATTTGGTTTCATGGAATGATATTTTGACGGATGATTTGCTGTCATGGCATGGTTTCATGTCAAATGATAATTGTTGAGATTTTCATCCAGAAAAAGGGTTGATTCATGATATACAAGACAAAAATCTTAAGCATGGTGTGAAACTCTGAAATGTCT
Coding sequences of Glyma13g32050
>Glyma13g32050.3   sequence type=CDS   gene model=Glyma13g32050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGACCTCCTGGGGGAATTCTAGCACCTGGCGAGAGTATAATTGCAACTGTGTTCAAGTTTATAGAGCATCCACTGAATAATGAAAAGCCACAAAAAACTGGAGTCAAATTTAAAATCACGAGCTTGAAGGTCAAAGGACCAATTGATTATGTCCCTGAAATGTTTGATGAGCTGAAGGATCAAGTAACAGTGGAGCAGATTTTGCAGGTTGTTTTTCTGGATCCAGAGCGTAGCTGTCCTGCTTTGGAAAAACTGAAGCTTCAGCTGGCTGAGGCTGATGCTGCTGTTGTTGAGGCACGTAAGAGAGCCCCAGAAGATGCAGGTCCTAAGATTCTCGGCGAAGGGCTTGTCATAGATGAATGGAAAGAGAGGAGGGAAAGATACCTGGCCAAGCAGCAGGGTGAAGTAGTAGTGGACTCTATATAG

>Glyma13g32050.4   sequence type=CDS   gene model=Glyma13g32050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGACCTCCTGGGGGAATTCTAGCACCTGGCGAGAGTATAATTGCAACTGTGTTCAAGTTTATAGAGCATCCACTGAATAATGAAAAGCCACAAAAAACTGGAGTCAAATTTAAAATCACGAGCTTGAAGGTCAAAGGACCAATTGATTATGTCCCTGAAATGTTTGATGAGCTGAAGGATCAAGTAACAGTGGAGCAGATTTTGCAGGTTGTTTTTCTGGATCCAGAGCGTAGCTGTCCTGCTTTGGAAAAACTGAAGCTTCAGCTGGCTGAGGCTGATGCTGCTGTTGTTGAGGCACGTAAGAGAGCCCCAGAAGATGCAGGTCCTAAGATTCTCGGCGAAGGGCTTGTCATAGATGAATGGAAAGAGAGGAGGGAAAGATACCTGGCCAAGCAGCAGGGTGAAGTAGTAGTGGACTCTATATAG
Predicted protein sequences of Glyma13g32050
>Glyma13g32050.3   sequence type=predicted peptide   gene model=Glyma13g32050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRPPGGILAPGESIIATVFKFIEHPLNNEKPQKTGVKFKITSLKVKGPIDYVPEMFDELKDQVTVEQILQVVFLDPERSCPALEKLKLQLAEADAAVVEARKRAPEDAGPKILGEGLVIDEWKERRERYLAKQQGEVVVDSI*

>Glyma13g32050.4   sequence type=predicted peptide   gene model=Glyma13g32050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRPPGGILAPGESIIATVFKFIEHPLNNEKPQKTGVKFKITSLKVKGPIDYVPEMFDELKDQVTVEQILQVVFLDPERSCPALEKLKLQLAEADAAVVEARKRAPEDAGPKILGEGLVIDEWKERRERYLAKQQGEVVVDSI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo