SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G21450 | AT | Annotation by Michelle Graham. TAIR10: PapD-like superfamily protein | chr4:11426136-11428125 FORWARD LENGTH=295 | SoyBase | E_val: 8.00E-70 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0032880 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein localization | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005198 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural molecule activity | SoyBase | N/A | ISS |
| PTHR10809 | Panther | VESICLE-ASSOCIATED MEMBRANE PROTEIN (VAMP) | JGI | ISS | |
| PF00635 | PFAM | MSP (Major sperm protein) domain | JGI | ISS | |
| UniRef100_I1M2D2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M2D2_SOYBN | SoyBase | E_val: 3.00E-96 | ISS |
| UniRef100_Q2HTV7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Major sperm protein n=1 Tax=Medicago truncatula RepID=Q2HTV7_MEDTR | SoyBase | E_val: 5.00E-73 | ISS |
|
Glyma13g32050 not represented in the dataset |
Glyma13g32050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g246800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g32050.4 sequence type=transcript gene model=Glyma13g32050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCCGCGGACTTAAGTTGTTAGAATTAGTTAGTGGGACCCGACACTGAAGCTTTGTCTTTAGAGATAGGGTCGACGACCACGTTGCTGCATCCCGTGCGTGGAAGTCATGGAAAAATCAGGCACAACAATCTAAAGGCAAAGTCTGGAATTTGTTCAAGCTTCGCTTTCTCACACCTCCAACTCTGTTTCTTCCCTTGCCAGATCGCTCCTCCCCGCACCTCGTCGTCTTAAGCTTCATCCTTCCAACAAGCTCTACTTCCCTTAGCCGGGCAAGCAGGCTAAGAGTGCCGTCAGGATTAAAAACACCAGCAAATCCAATGTAGCTTTCAAGGTATACTCAAACAAACATTTTCAAACAAATGCACCCAAGAGCTGTTTCATGCGACCTCCTGGGGGAATTCTAGCACCTGGCGAGAGTATAATTGCAACTGTGTTCAAGTTTATAGAGCATCCACTGAATAATGAAAAGCCACAAAAAACTGGAGTCAAATTTAAAATCACGAGCTTGAAGGTCAAAGGACCAATTGATTATGTCCCTGAAATGTTTGATGAGCTGAAGGATCAAGTAACAGTGGAGCAGATTTTGCAGGTTGTTTTTCTGGATCCAGAGCGTAGCTGTCCTGCTTTGGAAAAACTGAAGCTTCAGCTGGCTGAGGCTGATGCTGCTGTTGTTGAGGCACGTAAGAGAGCCCCAGAAGATGCAGGTCCTAAGATTCTCGGCGAAGGGCTTGTCATAGATGAATGGAAAGAGAGGAGGGAAAGATACCTGGCCAAGCAGCAGGGTGAAGTAGTAGTGGACTCTATATAGCTAAGTTTGAGTAGGAAATTGCGTTACTGCGGGGAAGATGACTTTAGGGAAACAATTATATTTAATCACAAAGTTTGGCTTAGAGAAAATTGTGGTGAATAAGTGTGAAGTCTCCTTTTGAGGAAACTATGATTGGATGAGAACATCCCCTGTTATGTACATAAGTGTCAGTGTCATTTGGTTTCATGGAATGATATTTTGACGGATGATTTGCTGTCATGGCATGGTTTCATGTCAAATGATAATTGTTGAGATTTTCATCCAGAAAAAGGGTTGATTCATGATATACAAGACAAAAATCTTAAGCATGGTGTGAAACTCTGAAATGTCT
>Glyma13g32050.3 sequence type=CDS gene model=Glyma13g32050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGACCTCCTGGGGGAATTCTAGCACCTGGCGAGAGTATAATTGCAACTGTGTTCAAGTTTATAGAGCATCCACTGAATAATGAAAAGCCACAAAAAACTGGAGTCAAATTTAAAATCACGAGCTTGAAGGTCAAAGGACCAATTGATTATGTCCCTGAAATGTTTGATGAGCTGAAGGATCAAGTAACAGTGGAGCAGATTTTGCAGGTTGTTTTTCTGGATCCAGAGCGTAGCTGTCCTGCTTTGGAAAAACTGAAGCTTCAGCTGGCTGAGGCTGATGCTGCTGTTGTTGAGGCACGTAAGAGAGCCCCAGAAGATGCAGGTCCTAAGATTCTCGGCGAAGGGCTTGTCATAGATGAATGGAAAGAGAGGAGGGAAAGATACCTGGCCAAGCAGCAGGGTGAAGTAGTAGTGGACTCTATATAG >Glyma13g32050.4 sequence type=CDS gene model=Glyma13g32050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGACCTCCTGGGGGAATTCTAGCACCTGGCGAGAGTATAATTGCAACTGTGTTCAAGTTTATAGAGCATCCACTGAATAATGAAAAGCCACAAAAAACTGGAGTCAAATTTAAAATCACGAGCTTGAAGGTCAAAGGACCAATTGATTATGTCCCTGAAATGTTTGATGAGCTGAAGGATCAAGTAACAGTGGAGCAGATTTTGCAGGTTGTTTTTCTGGATCCAGAGCGTAGCTGTCCTGCTTTGGAAAAACTGAAGCTTCAGCTGGCTGAGGCTGATGCTGCTGTTGTTGAGGCACGTAAGAGAGCCCCAGAAGATGCAGGTCCTAAGATTCTCGGCGAAGGGCTTGTCATAGATGAATGGAAAGAGAGGAGGGAAAGATACCTGGCCAAGCAGCAGGGTGAAGTAGTAGTGGACTCTATATAG
>Glyma13g32050.3 sequence type=predicted peptide gene model=Glyma13g32050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRPPGGILAPGESIIATVFKFIEHPLNNEKPQKTGVKFKITSLKVKGPIDYVPEMFDELKDQVTVEQILQVVFLDPERSCPALEKLKLQLAEADAAVVEARKRAPEDAGPKILGEGLVIDEWKERRERYLAKQQGEVVVDSI* >Glyma13g32050.4 sequence type=predicted peptide gene model=Glyma13g32050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRPPGGILAPGESIIATVFKFIEHPLNNEKPQKTGVKFKITSLKVKGPIDYVPEMFDELKDQVTVEQILQVVFLDPERSCPALEKLKLQLAEADAAVVEARKRAPEDAGPKILGEGLVIDEWKERRERYLAKQQGEVVVDSI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
