Glyma13g32040 - SoyBase

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Report for Sequence Feature Glyma13g32040

Feature Type:	gene_model
Chromosome:	Gm13
Start:	34335227
stop:	34337691
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g32040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G61350	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr1:22634099-22635820 FORWARD LENGTH=573	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
PTHR23315	Panther	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	JGI		ISS
PF03224	PFAM	V-ATPase subunit H	JGI		ISS
UniRef100_G7JRW0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Importin subunit alpha-2 n=1 Tax=Medicago truncatula RepID=G7JRW0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M2D0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M2D0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g32040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g32040

Paralog	Evidence	Comments
Glyma15g07270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g32040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g246700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g32040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g32040

Limit To All Plant Sequences

>Glyma13g32040.1   sequence type=CDS   gene model=Glyma13g32040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGACGAACAACCGTCGACCACCGCCGTCTCCGGTCTCCGTCGAGTCATCACGCTCATCTCTTCCTTGATCTCCCTCTCCCTCTCGATCAGAGTCTTCGCCGGAAAGTGGCAACTTATCCGGAGCAGGCTGGAGGAACTCCACTCGGCCCTCGTCGCCGGAGATGCCACGTCACTCTCCGGCGAGCTCCCGGCGATAACGGGCACGGCGGAGGAGTGCCACGAGCTGGCGCGGCGGTGCTTGGATCTGTCCTACAGCGGAAAGCTTCTTATGCAGAGCGACTTGGACGTGACATTGGGAAAGTTGGAAGCTCACGTCAAGAAGCTATCTGAGATATTCAAGAAGAATGTGTCGATGCATGGCTATGCCGTTGTGGTTTCAAGGCCTGGCTTTGGAGCTTGCAAAGATGACATGAGGTTCTACTTAAGGGACTTATTGACTCGAATGAAGGTTGGTGATTTGGGTATGAAGAAGCAGGCTTTGGTGAACTTGCATGAGGTGGTTGTGGAGGATGAAAAGTATGTGAAGTTGGTTGCTGAGGTTTCTGAGTTTGTTCACGTGTTGGTGGATTTTCTAGGTTGCAATGAGGTTGAGGTTGTGGAGGAGGCTGCCAAGGTTGTTTCTTTGGTTGCCGGGTTTGATTCTCATAAAGGGGTTTTGGTCAGTGCTGGGGTTATTGCCCCTTTGATTCGGGTTTTGGAATGTGGGAGTGAGGTAGGGAAGGTTGGTGCTGCGAGGTGTTTGCAAAGGTTGACCGAGAATTCGGATAATGCGTGGTGTGTTTCGGCTCATGGGGGTGTCACTGCTTTGTTGAGGATTTGTGAGAGTGTGGAGTGTAAAGGGGAATTGGTTGGTCCTGCTTGTGGGGTGTTGAGGAATCTCTGTGGTGTTGAGGAAATCAAGAGGTTTATGGTTGAGGAGGGTGTGGTTTCCACTTTTGTGAGGCTTGTGAGGTCTAAGGATGAAACAGTTCAGGTGAGTTCTATTGAGTTGATTAAGAGCATTGCCTCTGATGATGATTTGGTTAGGCAGATGGTGGTTAAAGAAGGAGGGGTTCGTGTTCTTTTGCGTGTTTTGGATCCTAAGTGGACTTGTTCGTCCAAAATAAGAGAGGTTGTGATGAGGGCTATTGAGAATTTGTGTTTTTCTTCGCCTAGTTGTGTTAGTGTTTTGCTGAGTTATGGTTTTGTGGATCAATTGATGTATTATGTGAGAAATGGGGAGGCTTTGGTTCAGGAGTTGGCGCTGAAGGTGGCGTTTAGATTCTGCGAAACATCGGAGGAGGCTAAGAAGGCGTTGGGCGATGCCGGCTTCATGGCTGAGCTTGTGAAGTTTCTGAATGCCAAATCATTTGAAGTTAGAGAAATGGCAGCAGAGGCACTCTCTGGAATGGTTATGGTGGCAAAAAATAGGAAGAGGTTTGTGCAGGATGACCAAAACATTGCTCTTCTTCTGCAATTGCTGGATCCAGGGGAGGGCAATTCAGGTAACAAAAAGTTGTTGATCTCTATCTTGATGTCACTAACAAGTTGCAACAGTGGGAGGAAAAAAATTGTGAGTTCCGGGTATGCCAAAAACATAGAGAGGCTTGCAGAAGCTGAGGTTTCTTCTGATGCCAAGAGGCTTGTGAGGAAGCTATCCACAAACCGGTTCCGCAGTATGTTGAATGGAATCTGGCACTCTTGA

Predicted protein sequences of Glyma13g32040

Limit To All Plant Sequences

>Glyma13g32040.1   sequence type=predicted peptide   gene model=Glyma13g32040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDEQPSTTAVSGLRRVITLISSLISLSLSIRVFAGKWQLIRSRLEELHSALVAGDATSLSGELPAITGTAEECHELARRCLDLSYSGKLLMQSDLDVTLGKLEAHVKKLSEIFKKNVSMHGYAVVVSRPGFGACKDDMRFYLRDLLTRMKVGDLGMKKQALVNLHEVVVEDEKYVKLVAEVSEFVHVLVDFLGCNEVEVVEEAAKVVSLVAGFDSHKGVLVSAGVIAPLIRVLECGSEVGKVGAARCLQRLTENSDNAWCVSAHGGVTALLRICESVECKGELVGPACGVLRNLCGVEEIKRFMVEEGVVSTFVRLVRSKDETVQVSSIELIKSIASDDDLVRQMVVKEGGVRVLLRVLDPKWTCSSKIREVVMRAIENLCFSSPSCVSVLLSYGFVDQLMYYVRNGEALVQELALKVAFRFCETSEEAKKALGDAGFMAELVKFLNAKSFEVREMAAEALSGMVMVAKNRKRFVQDDQNIALLLQLLDPGEGNSGNKKLLISILMSLTSCNSGRKKIVSSGYAKNIERLAEAEVSSDAKRLVRKLSTNRFRSMLNGIWHS*

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