SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G30470 | AT | Annotation by Michelle Graham. TAIR10: high-level expression of sugar-inducible gene 2 | chr2:12980904-12984724 REVERSE LENGTH=790 | SoyBase | E_val: 4.00E-162 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0010030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of seed germination | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:2000034 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of seed maturation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR23336 | Panther | ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. | JGI | ISS | |
| PTHR23336:SF2 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF02362 | PFAM | B3 DNA binding domain | JGI | ISS | |
| PF07496 | PFAM | CW-type Zinc Finger | JGI | ISS | |
| UniRef100_G7ILC5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: B3 domain-containing transcription repressor VAL2 n=1 Tax=Medicago truncatula RepID=G7ILC5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B0D6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B0D6 related cluster n=1 Tax=unknown RepID=UPI000233B0D6 | SoyBase | E_val: 0 | ISS |
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Glyma13g31970 not represented in the dataset |
Glyma13g31970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g07350 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g245900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g31970.1 sequence type=CDS gene model=Glyma13g31970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCGGCTTCGTCTTCGTCCTCCAAGCTATGCTTCAATTCTGACTGCAAAGAATTGAAGTCCGAAAGACCTAAGAAAGGGTGGAGACTCCGCAGCGGAGAACTAGCAGAGCTTTGTGATCGATGCGGCTCTGCTTTTGAAGAAGGAAGGTTCTGTGAGATTTTTCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTCTAAAGCGGATTCATTGTGGGTGTATTGTTTCAAGTCATGCTTTTATGTTGTTGGATCCTGGAGGAATTGAATGTTATGCATGTGCCCGCAAAAGTATTATTTTGCCATCTAACCTGCCATGGCCACAGTCCTTTTCCCTTCAAAATCGTTTATCTGATCGACTTAGAGACCTATCTGCCAAAGGTTGGAGTCAGCTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCACCCAGTCTGTTCAATTCTGCTTCTTCATCTGACCTGATCCCAGAAGTGCCTTCTTTAGTTGAGTTATCCAATAGCTTTGACAAAATGTATTGCAATGAAAGGTTACCTGCCTCAGCCTTGGAAAAGAAAAATGAGGACTTGTCTGGAATACCAGTTAATTGGAACGTCAAGCTTGGCTCACGGGAGATGATGCTTATGAATGGAATGAGGAATGAGGACAAATCAAGTTCATGTTTAAATATGTGTCAACAGCCTTCTTCTCTGAAGGAAGAGTCATCTCCTCAACCATTTGGTTTGGCTGTGCCTAATTCATGCCAAAATGAAAGAAATGGTCAACTTGGGGTAACTGGAAGTCATCCACAACAAACTCCACCACCTCCAGGAAAGCAATTTAATGGCACTATGCATTTAGCACCTGATTCATCAGGTGAGGCTCAGATTCGCAATGGGCGGCCTCGAGCAGATTCCCGAGGAAGAAACCAGTTATTGCCACGGTACTGGCCAAGGTGTACAGATCTGGAGCTACAGCAAATTTCTATAGATTCAAATTCTGTAATTACTCCCTTGTTTCAGAAAACTTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTACCCAAGAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCTCTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAGGCTGGTGATACTGTAACATTTAGCCGGTTGGAGCCAGAGGGAAGGTTGGTTATGGGATTTAGAAAGGCTTCAAGTGTCATGCCATCTGATCAGGACAATGAGACCAAGACTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCAGATCCTAATTCATGGTCTAAAGTTGATAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGCAAATCATTAATCTCTAGAAAAAGAAAGAGCAACATATTGAGCTCAAAGAGTAAACGTCTAAGAATTGAAAATGAGGATTTAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGTCTGCTCCGACCCCCTCCTAGCCACATTCCAAGTATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGAAGCTCCAGTGCTTGGGAAGCCAACAATTTTTACCAGTGATAGTGTGGGTGAAAAGATCCAGTGGGCTCAATGTGAAGATTGTTTCAAGTGGCGCAAATTGCCAGCAAGTGCGCTTCTTCCATCAAAATGGACGTGTTCTGATAATTCATGGGATCCAGAAAGATTTTCTTGTTCAGCTGCGCAAGAGCTGACAGCAGAGCAACTTGAGAATTTGCTACCTCCTTGTAATTCAGCTGTTCCCAAGAAAATGAAGGCCACCAAACAGGATCCCGATAATGCTGAAGCTTTGGAGGGACTTGACACCCTTGCAAATCTAGCTATCCTGGGAGAGGGTGAGGCACTCCCAGCATCCGCCCAGGCCACAACTAAGCATCCACGCCATAGACCTGGCTGCTCTTGCATTGTTTGCATTCAGCCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGCACATGTAATGTATGCTTAACAGTGAAGCGACGATTCCGTACCCTTATGTTACGGCGTGAGAAGAAACAATCAGAAAAAGAAGCAGAGACAACTCGTAAAAAGCAACAGCAACAACATCCTCTACCATTACCTTCATCTGAAATTTTGCTTGATGAAGATTCCTTGCCCTGTAGTAACACAGGTGATAGTAGCCCAAACCAGAACAAAGAGGGTAATGATGGTTCTGATGATGATCCTAGCCGAATAAAATCATCTGCTTCGCCGTTCAAAGGCAAAATTGACCTCAATATCCAACCAGAGCGAGAAGAAGAATTATCACCTGGTTCGGATTCTGGCGGCATGATGAAGTTGCTCCATGATGCTACTGAGCGATATCTCAAACAGCAGACTGTGAACTCTGGTACTGGAGATTCATCAGGCAGTCAGTCACAGCTGGTAGGAGATGCAATGAGGGAAGATAAACTTAGCAATGGTGTTGCCCATGGCAGTAGTAGTCATAATACTGATAAGGAACATGCCCAATCTTTGCCTATGAATGTGTGA
>Glyma13g31970.1 sequence type=predicted peptide gene model=Glyma13g31970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASASSSSSKLCFNSDCKELKSERPKKGWRLRSGELAELCDRCGSAFEEGRFCEIFHSNASGWRSCETCLKRIHCGCIVSSHAFMLLDPGGIECYACARKSIILPSNLPWPQSFSLQNRLSDRLRDLSAKGWSQLAGSGPVPWKQAPSLFNSASSSDLIPEVPSLVELSNSFDKMYCNERLPASALEKKNEDLSGIPVNWNVKLGSREMMLMNGMRNEDKSSSCLNMCQQPSSLKEESSPQPFGLAVPNSCQNERNGQLGVTGSHPQQTPPPPGKQFNGTMHLAPDSSGEAQIRNGRPRADSRGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSVMPSDQDNETKTGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSNILSSKSKRLRIENEDLIELKITWQEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDSVGEKIQWAQCEDCFKWRKLPASALLPSKWTCSDNSWDPERFSCSAAQELTAEQLENLLPPCNSAVPKKMKATKQDPDNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEKEAETTRKKQQQQHPLPLPSSEILLDEDSLPCSNTGDSSPNQNKEGNDGSDDDPSRIKSSASPFKGKIDLNIQPEREEELSPGSDSGGMMKLLHDATERYLKQQTVNSGTGDSSGSQSQLVGDAMREDKLSNGVAHGSSSHNTDKEHAQSLPMNV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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