SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g31931

Feature Type:gene_model
Chromosome:Gm13
Start:34247910
stop:34249232
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g31931
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G61260AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF761) | chr1:22593756-22594986 REVERSE LENGTH=344 SoyBaseE_val: 2.00E-55ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF05553PFAM Cotton fibre expressed protein JGI ISS
UniRef100_Q9SXA8UniRef Annotation by Michelle Graham. Most informative UniRef hit: T28P6.12 protein n=2 Tax=Arabidopsis thaliana RepID=Q9SXA8_ARATH SoyBaseE_val: 4.00E-34ISS
UniRef100_UPI000233B4D6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B4D6 related cluster n=1 Tax=unknown RepID=UPI000233B4D6 SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g31931
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g31931 not represented in the dataset
Glyma13g31931 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g31931 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g245600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g31931
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g31931
>Glyma13g31931.1   sequence type=CDS   gene model=Glyma13g31931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTCTTGGAAAGTTCTCCTCGTCTCCGCCGCCGTCTTGTTCGCGGCGTTAGGCCTCAGAGTCTCTCTTCCAGTCGCCGCCACCAACCTCCCTCTTCTTTGGAGTTTCTTCCTCTTGTGTTTCAAGCCTCCTTACCTCTTCGTTGTTCTCAACGCCATCATCATCTCCATCGTCGCTTCTTCACGGTTTCATCACTCATCAAACCCTCAATCTCCGGAGCCAACTCCTCCACGTGTTGAATCCATGCCCGCTCCCACCGTTCCAGAACCACCGCTTTTCCAAGTAAAAGCCGTTCTCGAAGTGGAGAAGAAAGTAATCGAAGAAGATGTTGTGGCACTAAAGAGAAAAGACTCGACGGAGATTCCATCGCCGGAGGAGAAGCCACTGGTGTCTGCTAGGTTCACTCACCGGAAATTCCTTAAATCCAGTTCAGAAGGTGGGAGAGCGTTGAGAGTGGTGGCTAAGGCAAAACGGGACGAGACGTTGGAGAGCACGTGGAAGGCCATAACGGAGGGTCGATCAATGCCATTGAGCAGGCACATGAAGAAGTCCGACATGTGGCACAACCGCAACGTGACCCCACAACCCCAAGAGACATTCAACGATGCACTGAGTGTGTCGTCCGGGAGGCTGCGGAAAGAACCCTCGCTGAGTCAAGACGAGTTGAATCGTCGCGTCGAAGCCTTCATACAAAAGTTCAACCAAGAGATGAGGCTGCAAAGACAACAATCCTTAGAACAGTACATGCAGATGATTAACCGCGGTGCCGCTTAA
Predicted protein sequences of Glyma13g31931
>Glyma13g31931.1   sequence type=predicted peptide   gene model=Glyma13g31931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSWKVLLVSAAVLFAALGLRVSLPVAATNLPLLWSFFLLCFKPPYLFVVLNAIIISIVASSRFHHSSNPQSPEPTPPRVESMPAPTVPEPPLFQVKAVLEVEKKVIEEDVVALKRKDSTEIPSPEEKPLVSARFTHRKFLKSSSEGGRALRVVAKAKRDETLESTWKAITEGRSMPLSRHMKKSDMWHNRNVTPQPQETFNDALSVSSGRLRKEPSLSQDELNRRVEAFIQKFNQEMRLQRQQSLEQYMQMINRGAA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo