Glyma13g31890 - SoyBase

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Report for Sequence Feature Glyma13g31890

Feature Type:	gene_model
Chromosome:	Gm13
Start:	34229605
stop:	34231904
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g31890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11190	AT	Annotation by Michelle Graham. TAIR10: bifunctional nuclease i \| chr1:3750338-3752696 REVERSE LENGTH=305	SoyBase	E_val: 6.00E-155	ISS
GO:0006308	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA catabolic process	SoyBase	N/A	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0080187	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ senescence	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0000014	GO-mf	Annotation by Michelle Graham. GO Molecular Function: single-stranded DNA specific endodeoxyribonuclease activity	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004519	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endonuclease activity	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
GO:0016891	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endoribonuclease activity, producing 5'-phosphomonoesters	SoyBase	N/A	ISS
GO:0043765	GO-mf	Annotation by Michelle Graham. GO Molecular Function: T/G mismatch-specific endonuclease activity	SoyBase	N/A	ISS
PF02265	PFAM	S1/P1 Nuclease	JGI		ISS
UniRef100_A5A338	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Endonuclease n=1 Tax=Glycine max RepID=A5A338_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1M2B5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M2B5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g31890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g31890

Paralog	Evidence	Comments
Glyma15g07430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g31890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g245100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g31890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g31890

Limit To All Plant Sequences

>Glyma13g31890.1   sequence type=CDS   gene model=Glyma13g31890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCCTTCCTGAAGAAAACAAATCATGTAAGGTCCGCAGAAAACAGAATTCTAGTGAAGAGATGGTTAGACTTGGACGTTTGTGGATGTCTCTTCTTCCATTTGGATTTCTCTTGTTCTTTAGTTCAGCTTTCATCAGAGTACCTGGTGCCCTTGCCTGGAGCAAAGAGGGTCATGTCATGACATGCCAAATTGCGCAGGCACTTTTAGAGCCTGAGGCATCAGAAGCCGTGTACCAATTGTTACCTGACTATGTCAAAGGTAACTTATCATCCCTATGCATATGGCCTGACCAAATTAGACACTGGTACAAATATAGGTGGACAAGTCCACTTCATTTCATTGACACACCAGATAATGCTTGTTCTTTTCAGTATTCAAGGGACTGCCATGATTCCCATGGCGTTGAGGATATGTGTGTTGCAGGTGCTGTGAAAAATTTCACTTCTCAACTCATGCATTACAAAGAGGGGACATCTGATCGGAGATATAATATGACTGAGGCGTTATTGTTCTTGTCACACTTCATGGGAGATATACATCAGCCAATGCACGTTGGATTTACAACTGACGAAGGAGGAAACACGATAGAACTACACTGGTTTAGGCACAAATCAAATCTGCACCATGTGTGGGACAGAGAAATAATTCTCACTGCATTAGCAGACTATTATGATAAGGATGTGAGTCTCCTTCTCCAAGACATTGAGAGGAACTACACTGATGGGATATGGTCAGATGATATTACATCCTGGAAACATTGTAATGATATCTCTCAATGTGTAAATAATTGGGCCAAAGAGAGCATACAAATAGCTTGCAAATGGGGTTACGAAGGAGTTGAAGCTGGAGCAACTCTGGCAGATGATTACTTCGACTCAAGGGTGCCATTTGTCATGAAACGAATTGCTCAGGGTGGAATTCGATTAGCCATGATTCTGAACAAGGTGTTTGCTGACTCTGAAGAAAGATTTGCAACAGCAACTTAG

Predicted protein sequences of Glyma13g31890

Limit To All Plant Sequences

>Glyma13g31890.1   sequence type=predicted peptide   gene model=Glyma13g31890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCLPEENKSCKVRRKQNSSEEMVRLGRLWMSLLPFGFLLFFSSAFIRVPGALAWSKEGHVMTCQIAQALLEPEASEAVYQLLPDYVKGNLSSLCIWPDQIRHWYKYRWTSPLHFIDTPDNACSFQYSRDCHDSHGVEDMCVAGAVKNFTSQLMHYKEGTSDRRYNMTEALLFLSHFMGDIHQPMHVGFTTDEGGNTIELHWFRHKSNLHHVWDREIILTALADYYDKDVSLLLQDIERNYTDGIWSDDITSWKHCNDISQCVNNWAKESIQIACKWGYEGVEAGATLADDYFDSRVPFVMKRIAQGGIRLAMILNKVFADSEERFATAT*

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