Glyma13g31850 - SoyBase

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Report for Sequence Feature Glyma13g31850

Feature Type:	gene_model
Chromosome:	Gm13
Start:	34204658
stop:	34209152
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g31850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54390	AT	Annotation by Michelle Graham. TAIR10: HAL2-like \| chr5:22086133-22087586 FORWARD LENGTH=373	SoyBase	E_val: 3.00E-169	ISS
GO:0006790	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfur compound metabolic process	SoyBase	N/A	ISS
GO:0046854	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0008441	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3'(2'),5'-bisphosphate nucleotidase activity	SoyBase	N/A	ISS
KOG1528	KOG	Salt-sensitive 3'-phosphoadenosine-5'-phosphatase HAL2/SAL1	JGI		ISS
PTHR20854	Panther	INOSITOL MONOPHOSPHATASE	JGI		ISS
PTHR20854:SF3	Panther	DIPHOSPHONUCLEOSIDE PHOSPHOHYDROLASE	JGI		ISS
PF00459	PFAM	Inositol monophosphatase family	JGI		ISS
UniRef100_G7ILG2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PAP-specific phosphatase HAL2-like protein n=1 Tax=Medicago truncatula RepID=G7ILG2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M2B3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M2B3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g31850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g31850

Paralog	Evidence	Comments
Glyma15g07450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g31850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g244900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g31850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g31850

Limit To All Plant Sequences

>Glyma13g31850.1   sequence type=CDS   gene model=Glyma13g31850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCATATTTTCCAAGCTTTGGTACAAAAATCCCACGTATGGGGAAGGGGTACGATGATGTGTTGTTCACAGTGATCAACCAATTAGTTAAACCAGGTTCATGGTCCAACTATAAAGTCCCCTGCAACCTCTCAAAGCAACACATTAGCTTTGTATCGAAATTCGACCAAATTTGTTCTTCTCCTGTGATGATGGAGGACGAGCATAAAAAGTTGGATTCTTTGCCTGAATTTGGATTATCAGAGCCAGAGAAATATTCCAAGGAATTGGAGGTGGCTGTTAGAGCAGTGCAGATGGCGTGTTCCCTCTGCCAGAGAGTGCAGGACACTTTGATTTCCAACGCTCGGACCAATCATCGTCAGGTTCAGTCCAAGGATGACAATTCTCCGGTTACGGTTGCAGATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGAGTCAAAATGTCTCAATTGTTGCTGAAGAAGATGCTCAAACTCTCTCCGAGGCTAACGCATCTGAGCTGTTAGAAGCTGTGGTTGAAACTGTGAATCAATGTCTAGCCGAAGCACCTCGATTTGGAGTTCAGGAGCCAAAATCACCTCTTGGAACTTCAGATGTTCTTGAAATCATTAGTCGCTGCAACTCAACTGGGGGTCCCACTGGAAGATTTTGGGTACTGGATCCTGTTGATGGCACATTAGGATTTGTACGTGGAGATCAATATGCTGTAGCTCTAGCACTCATAGAGGATGGAGAAGTGAAACTTGGTGTTCTTGGATGTCCTAACTACCCAATGAGGAAGGAATGGTTAAGTTATCATCACCGATATCATAGGATTATATCCAAGTTGACACGTCCAGCTTCTGAAACTTGGAACAAAGGTTGTGTGCTATATGCTAAAAAGGGTAGTGAGAAGGCTTGGATGCAACCACTGCTCCATGTCAATAAGATGTTTGTGTGGCCAAACCATGCAAAACAAGTTTCTGTCTCTTCCATTGACAATCCTGCACTGGCCACTTTTTGTGAACCAGTTGAGAAGGCCAATTCAAGCCATTCTTTTACAGCAGGACTGGCTCACAGTGTTGGTCTCAGGAAACAGCCATTGAGGGTGTACAGCATGGTGAAATACGCAGCAATAGCTCGTGGGGATGCTGAGGTTTTCATGAAGTTTGCAAGGGCCGGTTACAAGGAGAAAATATGGGATCATGCTGCAGGCGTTATCATCATACAAGAAGCTGGTGGGATGGTAACAGATGCTGGAGGACTTCCCCTAGACTTCTCAAAAGGCTTATATTTAGAAGGCCTTGATCGTGGCATAGTTGCTTGTTCTGGAGCCACACTACATGCAAAGATCATTGATGCTGTTGATGCCAGCTGGGGCTCTTCTAGCCTTTGA

Predicted protein sequences of Glyma13g31850

Limit To All Plant Sequences

>Glyma13g31850.1   sequence type=predicted peptide   gene model=Glyma13g31850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSYFPSFGTKIPRMGKGYDDVLFTVINQLVKPGSWSNYKVPCNLSKQHISFVSKFDQICSSPVMMEDEHKKLDSLPEFGLSEPEKYSKELEVAVRAVQMACSLCQRVQDTLISNARTNHRQVQSKDDNSPVTVADWSVQAIVSWMLSECLGSQNVSIVAEEDAQTLSEANASELLEAVVETVNQCLAEAPRFGVQEPKSPLGTSDVLEIISRCNSTGGPTGRFWVLDPVDGTLGFVRGDQYAVALALIEDGEVKLGVLGCPNYPMRKEWLSYHHRYHRIISKLTRPASETWNKGCVLYAKKGSEKAWMQPLLHVNKMFVWPNHAKQVSVSSIDNPALATFCEPVEKANSSHSFTAGLAHSVGLRKQPLRVYSMVKYAAIARGDAEVFMKFARAGYKEKIWDHAAGVIIIQEAGGMVTDAGGLPLDFSKGLYLEGLDRGIVACSGATLHAKIIDAVDASWGSSSL*

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