Glyma13g31800 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g31800

Feature Type:	gene_model
Chromosome:	Gm13
Start:	34161487
stop:	34166984
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g31800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G61215	AT	Annotation by Michelle Graham. TAIR10: bromodomain 4 \| chr1:22573173-22575374 FORWARD LENGTH=475	SoyBase	E_val: 2.00E-90	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PTHR22880	Panther	FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS	JGI		ISS
PTHR22880:SF85	Panther	BRD4 (BROMODOMAIN 4), DNA BINDING	JGI		ISS
PF00439	PFAM	Bromodomain	JGI		ISS
UniRef100_G7ILH0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bromodomain protein n=1 Tax=Medicago truncatula RepID=G7ILH0_MEDTR	SoyBase	E_val: 2.33E-156	ISS
UniRef100_UPI000233B4D4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B4D4 related cluster n=1 Tax=unknown RepID=UPI000233B4D4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g31800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g31800

Paralog	Evidence	Comments
Glyma15g07500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g31800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g244400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g31800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g31800

Limit To All Plant Sequences

>Glyma13g31800.2   sequence type=transcript   gene model=Glyma13g31800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTTTCCATAATAAATTCATTTTCAGTATTTACATTTTGGTAGGAGTTGATTTCAGCATTACGACAAAGGATTTTTTGTTTGTTATATAAAAAGGGCTTTTTTTTAAATAAAAAAAAAGGTAAATTTCATTGTATTTGTTAAGTTGCCCCGTAGGGTCCCCGAATTTTCTAGGTCATTTTTTCTTATAAAATAACCGTTACTTATAGTCTTTCTAGTCGATGACATTTCTAAGGAAATGGCATTTTATGACGGGGGTATAAATGGAAATCCAAAAACCTAGAAAGTAAAGATAAAGCAGGCAGCTTAGCAGTTAGGAAAACCAAATATTGATATTCAGGCAATTTTCTTTTTATTTATTTTGTGTATTTTTAAAATTCTACGGCTCAACCATTACGCGGTCGTGACTCGTGAGCCATCTCTCTTGACTCGTTAGGCTGATTTCGTAGCTTATAAGTTATAATTAATTCATATCAAACTAGTTGATAGGTTATTTGTTAAAACAATTAAAGTACGATGAATTATTAGTCAACGAATTTTTAGTCCGTTTTATGAGTCGTTATAGAAAACCAAGGATTGTTTTAAACAAACAAATGGAAAAGAAAATCAACTATTGTGACTCCAAGCCAATAGCAAGTCTTGGGCCTTCCTAAGTAAAGAATAATATTATTAACTAAAGATAGTACACAAAAGAGATTGTTAGAGTGACCATTCGGTGGATGACACGTGTCATGTATACAATGGGTGGCCTCCACGTGCCAATTGTTCTCTATAGGTGCTGATCACTTAGTCCTAATGCGTTACACATTCTACATCATAACTTCCACATGGTCTGTAAAGCCAAATATGAAGACTTGCAAAAGCGGTACTCTGGGAACAAGGCTTGGTTTGAGGAACTTAGGAAGACTAGAGTAGCAGAGCTGAAAAGAGCTCTGGAGGTGTCTGAAGATTCTATTGGGTCTCTTGAATCTAAACTTGAAAGCCTTAAGGCTGGAAAGAATGAGAAAAAAGATGATCGTTATGTTGACAAAGGATCGGCTCGTCCAAAGTTACATGTAGCCTCACAGAAATTGGAAAGAGTTGAATCTTCCACCAAAGAGACATCAAAAGATGGGCTATCTGCTGGGAGTTTCACACATGAAACCAGGACAAACTGGTCTCCTGAATGTCCGGTTCCAGCACGGTCTGTGGAAGATATGGAGACTAAGCCTGAGGTTTCACACTCCACTGAGCAGGCCAAAGTTTTGAATGTAGATAATCGGGCACATACTATATACGAAGGACAAGGAGGAAGTCTTAAAAAACGGAGAGGGAAGAGGAAGAGGAAGGATTGTGGCAGAAATATGAAGGAAGCAAGTGTTGGGGAAAGTGACTTGTTAGATTCGGCTGACATTGTGTCATGGTGTAAAGAAAGTTCGACCAGCAACTGTGGTGAAGTTGCCAAATCATGTGGTGTAGATGATCAAAATAGGAACTTAAAAAAGGATAGGGTGGAAGACATGATGGAGATTTTGGATTTTATATTTGAAACTAAAGGTGCTCCGGCTTTCCGACGCAGACTTGATAGTCAGAAGAGAGGAAGGTACAAGAAAATGATCCGGCAACATATGGACTTTGACACTATAAGGTCAAGAATTAGCAGCCAGACAATTAAGTCGAGTGTAGAACTTTTCAGGGACTTGCTCCTACTCACTAACAATGCCTTAGTCTTCTACTCCAAGAGCACTCGTGAATACAAAACTGTTCTACTGCTAAGAGGCATTGTGACCAAAAAAATGAAGGAAACTTTGAAGGGTACTACGAGCAACAAAGTCACCACTCAAGCTACCAATGTTCCTATTAAACTACCTGTGCATAATCCTCATGTGAAACCAAGAAGTGTAAGGCCAGGCAACAGAAAAATAGTTGCAAAGGCAGTTGGTGGCAACAACTCTGCATCTGGGGTGTCACATGGAACTAAGAAACCTAGTAAAGTTGAATCTCCATCCTCAGTGGAATCCTTAACTGTGAAGAAAAAAGGTTTTGGTCGACCAAAAAAGGTTGGACGTGGGGCTGCAGGTCAGAGGCCTGCAATGCCAATGAAGGGAAAGAAAAGAGTTAGGACAAAGTGATAGTGCTTTAGCCAATAGGTTTCTTTGTACAAAGTCTTTTCCTTTTGGTTATAAGAATATTTTTTTGTTTGCTTTAATGAAGCACCTAGTCTCATGCAACAACCAAAAGGATCTTTGATAAGCTGCAGAGGGAAACTAACAACAATATATGGAATAGTTCTGAACTGTAGTAACTAACATGGAGAAGTTTCCAATGGAAGTAGTCACTTTTTTGTTTACAGCATTTAAATGTTGTTGTAAATTGTAAGTACGAATTTTGATTGTAGCAAAAGTGCACTAATTTTCATGGATGAGCATGTTAACGCGGGTGATTAACTTGATTTT

>Glyma13g31800.3   sequence type=transcript   gene model=Glyma13g31800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTTCTTTGCCTTGAATAAAATATCCATTCGAATTGTTGGAAAACTAATATACTTTATATGGGTATAGTTTACAAAATATCTTTGTTTTTAGGTCTCTTGAATCTAAACTTGAAAGCCTTAAGGCTGGAAAGAATGAGAAAAAAGATGATCGTTATGTTGACAAAGGATCGGCTCGTCCAAAGTTACATGTAGCCTCACAGAAATTGGAAAGAGTTGAATCTTCCACCAAAGAGACATCAAAAGATGGGCTATCTGCTGGGAGTTTCACACATGAAACCAGGACAAACTGGTCTCCTGAATGTCCGGTTCCAGCACGGTCTGTGGAAGATATGGAGACTAAGCCTGAGGTTTCACACTCCACTGAGCAGGCCAAAGTTTTGAATGTAGATAATCGGGCACATACTATATACGAAGGACAAGGAGGAAGTCTTAAAAAACGGAGAGGGAAGAGGAAGAGGAAGGATTGTGGCAGAAATATGAAGGAAGCAAGTGTTGGGGAAAGTGACTTGTTAGATTCGGCTGACATTGTGTCATGGTGTAAAGAAAGTTCGACCAGCAACTGTGGTGAAGTTGCCAAATCATGTGGTGTAGATGATCAAAATAGGAACTTAAAAAAGGATAGGGTGGAAGACATGATGGAGATTTTGGATTTTATATTTGAAACTAAAGGTGCTCCGGCTTTCCGACGCAGACTTGATAGTCAGAAGAGAGGAAGGTACAAGAAAATGATCCGGCAACATATGGACTTTGACACTATAAGGTCAAGAATTAGCAGCCAGACAATTAAGTCGAGTGTAGAACTTTTCAGGGACTTGCTCCTACTCACTAACAATGCCTTAGTCTTCTACTCCAAGAGCACTCGTGAATACAAAACTGTTCTACTGCTAAGAGGCATTGTGACCAAAAAAATGAAGGAAACTTTGAAGGGTACTACGAGCAACAAAGTCACCACTCAAGCTACCAATGTTCCTATTAAACTACCTGTGCATAATCCTCATGTGAAACCAAGAAGTGTAAGGCCAGGCAACAGAAAAATAGTTGCAAAGGCAGTTGGTGGCAACAACTCTGCATCTGGGGTGTCACATGGAACTAAGAAACCTAGTAAAGTTGAATCTCCATCCTCAGTGGAATCCTTAACTGTGAAGAAAAAAGGTTTTGGTCGACCAAAAAAGGTTGGACGTGGGGCTGCAGGTCAGAGGCCTGCAATGCCAATGAAGGGAAAGAAAAGAGTTAGGACAAAGTGATAGTGCTTTAGCCAATAGGTTTCTTTGTACAAAGTCTTTTCCTTTTGGTTATAAGAATATTTTTTTGTTTGCTTTAATGAAGCACCTAGTCTCATGCAACAACCAAAAGGATCTTTGATAAGCTGCAGAGGGAAACTAACAACAATATATGGAATAGTTCTGAACTGTAGTAACTAACATGGAGAAGTTTCCAATGGAAGTAGTCACTTTTTTGTTTACAGCATTTAAATGTTGTTGTAAATTGTAAGTACGAATTTTGATTGTAGCAAAAGTGCACTAATTTTCATGGATGAGCATGTTAACGCGGGTGATTAACTTGATTTT

Coding sequences of Glyma13g31800

Limit To All Plant Sequences

>Glyma13g31800.1   sequence type=CDS   gene model=Glyma13g31800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAACGGAGGTGATGGGGAGGTGGGGCACCTGGGAAGAGCTCCTCCTTGGTGGCGCCGTTCTCCGCTACGGAGCCCGGAATTGGAAAGTCGTCGCCGCCGAGCTACGGGCACGAACAGTTTGTCCCTACATCATTACACCTGAGGTCTGTAAAGCCAAATATGAAGACTTGCAAAAGCGGTACTCTGGGAACAAGGCTTGGTTTGAGGAACTTAGGAAGACTAGAGTAGCAGAGCTGAAAAGAGCTCTGGAGGTGTCTGAAGATTCTATTGGGTCTCTTGAATCTAAACTTGAAAGCCTTAAGGCTGGAAAGAATGAGAAAAAAGATGATCGTTATGTTGACAAAGGATCGGCTCGTCCAAAGTTACATGTAGCCTCACAGAAATTGGAAAGAGTTGAATCTTCCACCAAAGAGACATCAAAAGATGGGCTATCTGCTGGGAGTTTCACACATGAAACCAGGACAAACTGGTCTCCTGAATGTCCGGTTCCAGCACGGTCTGTGGAAGATATGGAGACTAAGCCTGAGGTTTCACACTCCACTGAGCAGGCCAAAGTTTTGAATGTAGATAATCGGGCACATACTATATACGAAGGACAAGGAGGAAGTCTTAAAAAACGGAGAGGGAAGAGGAAGAGGAAGGATTGTGGCAGAAATATGAAGGAAGCAAGTGTTGGGGAAAGTGACTTGTTAGATTCGGCTGACATTGTGTCATGGTGTAAAGAAAGTTCGACCAGCAACTGTGGTGAAGTTGCCAAATCATGTGGTGTAGATGATCAAAATAGGAACTTAAAAAAGGATAGGGTGGAAGACATGATGGAGATTTTGGATTTTATATTTGAAACTAAAGGTGCTCCGGCTTTCCGACGCAGACTTGATAGTCAGAAGAGAGGAAGGTACAAGAAAATGATCCGGCAACATATGGACTTTGACACTATAAGGTCAAGAATTAGCAGCCAGACAATTAAGTCGAGTGTAGAACTTTTCAGGGACTTGCTCCTACTCACTAACAATGCCTTAGTCTTCTACTCCAAGAGCACTCGTGAATACAAAACTGTTCTACTGCTAAGAGGCATTGTGACCAAAAAAATGAAGGAAACTTTGAAGGGTACTACGAGCAACAAAGTCACCACTCAAGCTACCAATGTTCCTATTAAACTACCTGTGCATAATCCTCATGTGAAACCAAGAAGTGTAAGGCCAGGCAACAGAAAAATAGTTGCAAAGGCAGTTGGTGGCAACAACTCTGCATCTGGGGTGTCACATGGAACTAAGAAACCTAGTAAAGTTGAATCTCCATCCTCAGTGGAATCCTTAACTGTGAAGAAAAAAGGTTTTGGTCGACCAAAAAAGGTTGGACGTGGGGCTGCAGGTCAGAGGCCTGCAATGCCAATGAAGGGAAAGAAAAGAGTTAGGACAAAGTGA

>Glyma13g31800.2   sequence type=CDS   gene model=Glyma13g31800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCTGTAAAGCCAAATATGAAGACTTGCAAAAGCGGTACTCTGGGAACAAGGCTTGGTTTGAGGAACTTAGGAAGACTAGAGTAGCAGAGCTGAAAAGAGCTCTGGAGGTGTCTGAAGATTCTATTGGGTCTCTTGAATCTAAACTTGAAAGCCTTAAGGCTGGAAAGAATGAGAAAAAAGATGATCGTTATGTTGACAAAGGATCGGCTCGTCCAAAGTTACATGTAGCCTCACAGAAATTGGAAAGAGTTGAATCTTCCACCAAAGAGACATCAAAAGATGGGCTATCTGCTGGGAGTTTCACACATGAAACCAGGACAAACTGGTCTCCTGAATGTCCGGTTCCAGCACGGTCTGTGGAAGATATGGAGACTAAGCCTGAGGTTTCACACTCCACTGAGCAGGCCAAAGTTTTGAATGTAGATAATCGGGCACATACTATATACGAAGGACAAGGAGGAAGTCTTAAAAAACGGAGAGGGAAGAGGAAGAGGAAGGATTGTGGCAGAAATATGAAGGAAGCAAGTGTTGGGGAAAGTGACTTGTTAGATTCGGCTGACATTGTGTCATGGTGTAAAGAAAGTTCGACCAGCAACTGTGGTGAAGTTGCCAAATCATGTGGTGTAGATGATCAAAATAGGAACTTAAAAAAGGATAGGGTGGAAGACATGATGGAGATTTTGGATTTTATATTTGAAACTAAAGGTGCTCCGGCTTTCCGACGCAGACTTGATAGTCAGAAGAGAGGAAGGTACAAGAAAATGATCCGGCAACATATGGACTTTGACACTATAAGGTCAAGAATTAGCAGCCAGACAATTAAGTCGAGTGTAGAACTTTTCAGGGACTTGCTCCTACTCACTAACAATGCCTTAGTCTTCTACTCCAAGAGCACTCGTGAATACAAAACTGTTCTACTGCTAAGAGGCATTGTGACCAAAAAAATGAAGGAAACTTTGAAGGGTACTACGAGCAACAAAGTCACCACTCAAGCTACCAATGTTCCTATTAAACTACCTGTGCATAATCCTCATGTGAAACCAAGAAGTGTAAGGCCAGGCAACAGAAAAATAGTTGCAAAGGCAGTTGGTGGCAACAACTCTGCATCTGGGGTGTCACATGGAACTAAGAAACCTAGTAAAGTTGAATCTCCATCCTCAGTGGAATCCTTAACTGTGAAGAAAAAAGGTTTTGGTCGACCAAAAAAGGTTGGACGTGGGGCTGCAGGTCAGAGGCCTGCAATGCCAATGAAGGGAAAGAAAAGAGTTAGGACAAAGTGA

>Glyma13g31800.3   sequence type=CDS   gene model=Glyma13g31800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACTAAGCCTGAGGTTTCACACTCCACTGAGCAGGCCAAAGTTTTGAATGTAGATAATCGGGCACATACTATATACGAAGGACAAGGAGGAAGTCTTAAAAAACGGAGAGGGAAGAGGAAGAGGAAGGATTGTGGCAGAAATATGAAGGAAGCAAGTGTTGGGGAAAGTGACTTGTTAGATTCGGCTGACATTGTGTCATGGTGTAAAGAAAGTTCGACCAGCAACTGTGGTGAAGTTGCCAAATCATGTGGTGTAGATGATCAAAATAGGAACTTAAAAAAGGATAGGGTGGAAGACATGATGGAGATTTTGGATTTTATATTTGAAACTAAAGGTGCTCCGGCTTTCCGACGCAGACTTGATAGTCAGAAGAGAGGAAGGTACAAGAAAATGATCCGGCAACATATGGACTTTGACACTATAAGGTCAAGAATTAGCAGCCAGACAATTAAGTCGAGTGTAGAACTTTTCAGGGACTTGCTCCTACTCACTAACAATGCCTTAGTCTTCTACTCCAAGAGCACTCGTGAATACAAAACTGTTCTACTGCTAAGAGGCATTGTGACCAAAAAAATGAAGGAAACTTTGAAGGGTACTACGAGCAACAAAGTCACCACTCAAGCTACCAATGTTCCTATTAAACTACCTGTGCATAATCCTCATGTGAAACCAAGAAGTGTAAGGCCAGGCAACAGAAAAATAGTTGCAAAGGCAGTTGGTGGCAACAACTCTGCATCTGGGGTGTCACATGGAACTAAGAAACCTAGTAAAGTTGAATCTCCATCCTCAGTGGAATCCTTAACTGTGAAGAAAAAAGGTTTTGGTCGACCAAAAAAGGTTGGACGTGGGGCTGCAGGTCAGAGGCCTGCAATGCCAATGAAGGGAAAGAAAAGAGTTAGGACAAAGTGA

Predicted protein sequences of Glyma13g31800

Limit To All Plant Sequences

>Glyma13g31800.1   sequence type=predicted peptide   gene model=Glyma13g31800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTEVMGRWGTWEELLLGGAVLRYGARNWKVVAAELRARTVCPYIITPEVCKAKYEDLQKRYSGNKAWFEELRKTRVAELKRALEVSEDSIGSLESKLESLKAGKNEKKDDRYVDKGSARPKLHVASQKLERVESSTKETSKDGLSAGSFTHETRTNWSPECPVPARSVEDMETKPEVSHSTEQAKVLNVDNRAHTIYEGQGGSLKKRRGKRKRKDCGRNMKEASVGESDLLDSADIVSWCKESSTSNCGEVAKSCGVDDQNRNLKKDRVEDMMEILDFIFETKGAPAFRRRLDSQKRGRYKKMIRQHMDFDTIRSRISSQTIKSSVELFRDLLLLTNNALVFYSKSTREYKTVLLLRGIVTKKMKETLKGTTSNKVTTQATNVPIKLPVHNPHVKPRSVRPGNRKIVAKAVGGNNSASGVSHGTKKPSKVESPSSVESLTVKKKGFGRPKKVGRGAAGQRPAMPMKGKKRVRTK*

>Glyma13g31800.2   sequence type=predicted peptide   gene model=Glyma13g31800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVCKAKYEDLQKRYSGNKAWFEELRKTRVAELKRALEVSEDSIGSLESKLESLKAGKNEKKDDRYVDKGSARPKLHVASQKLERVESSTKETSKDGLSAGSFTHETRTNWSPECPVPARSVEDMETKPEVSHSTEQAKVLNVDNRAHTIYEGQGGSLKKRRGKRKRKDCGRNMKEASVGESDLLDSADIVSWCKESSTSNCGEVAKSCGVDDQNRNLKKDRVEDMMEILDFIFETKGAPAFRRRLDSQKRGRYKKMIRQHMDFDTIRSRISSQTIKSSVELFRDLLLLTNNALVFYSKSTREYKTVLLLRGIVTKKMKETLKGTTSNKVTTQATNVPIKLPVHNPHVKPRSVRPGNRKIVAKAVGGNNSASGVSHGTKKPSKVESPSSVESLTVKKKGFGRPKKVGRGAAGQRPAMPMKGKKRVRTK*

>Glyma13g31800.3   sequence type=predicted peptide   gene model=Glyma13g31800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METKPEVSHSTEQAKVLNVDNRAHTIYEGQGGSLKKRRGKRKRKDCGRNMKEASVGESDLLDSADIVSWCKESSTSNCGEVAKSCGVDDQNRNLKKDRVEDMMEILDFIFETKGAPAFRRRLDSQKRGRYKKMIRQHMDFDTIRSRISSQTIKSSVELFRDLLLLTNNALVFYSKSTREYKTVLLLRGIVTKKMKETLKGTTSNKVTTQATNVPIKLPVHNPHVKPRSVRPGNRKIVAKAVGGNNSASGVSHGTKKPSKVESPSSVESLTVKKKGFGRPKKVGRGAAGQRPAMPMKGKKRVRTK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain