Glyma13g31720 - SoyBase

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Report for Sequence Feature Glyma13g31720

Feature Type:	gene_model
Chromosome:	Gm13
Start:	34099998
stop:	34104935
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g31720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G61150	AT	Annotation by Michelle Graham. TAIR10: LisH and RanBPM domains containing protein \| chr1:22542928-22544355 FORWARD LENGTH=243	SoyBase	E_val: 5.00E-143	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2659	KOG	LisH motif-containing protein	JGI		ISS
PTHR12864	Panther	RAN BINDING PROTEIN 9-RELATED	JGI		ISS
PF08513	PFAM	LisH	JGI		ISS
PF10607	PFAM	Ran binding protein in the microtubule-organising centre	JGI		ISS
UniRef100_I1M296	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M296_SOYBN	SoyBase	E_val: 6.00E-173	ISS
UniRef100_O22730	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F11P17.12 protein n=1 Tax=Arabidopsis thaliana RepID=O22730_ARATH	SoyBase	E_val: 1.00E-137	ISS

Expression Patterns of Glyma13g31720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g31720 not represented in the dataset	Glyma13g31720 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g31720

Paralog	Evidence	Comments
Glyma15g07570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g31720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g243700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g31720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g31720

Limit To All Plant Sequences

>Glyma13g31720.4   sequence type=transcript   gene model=Glyma13g31720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATTTTACCCTAAATAATGATGTATGGGCATTAATCTCATTAATAAAACACCTGATAAAACAAAGTCAAATTGAAAAATTACATAACATGAGAAGATTTTCTTTCGTTATCGATTGGGCCTTGTTCAGGTCCAGTTGAGACCCGGTAGAAAACGAAGCGGATCCGAACTCAATGAGGAAAACCGAAGCAAATATCTGTATATCACATTGAAACAGAACTCTAGAAGCAACTTGGAAGAAAGGGATCGCCGGCGGCACCCTCCGAAGACGGAGATACACCCACTCACAACCACTTTCCCGGAAAATAACCACCGACCACAATTTCTTGGAATTTATTTTGCGTTTTGGTGCCTTTGTTGTTCGGATTTTCAGGTGAGGGAGCTCGTCTCGTGTGTCGTTTAGGGCTAGAAATGGGGTTTAAGTGGGTGCACTGATGTCATTGTTCTTGCTTGAGATTCGTCAACTTGCAGAAATCGAGGCAATGGCTGCATCTAAGAAACTGATAACAAGAGAAGAGTGGGAGAAGAAGCTTAGTGATGTGAAGATTAGAAAAGAAGACATGAATAAATTGGTAATGAATTTCCTTGTCACCGAAGGCTATGTTGAAGCTGCTGAGAAATTTCGAATGGAGTCTGGAACTGAACCAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAGTACAAAGTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAGATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGATAGAACTCATCCGGAATGGAAAAGTAGAAGAAGCTCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAATCAAAGTTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAAGATGTTTCTAACTGTCCTGTTGGAGAGCTGCTTGACATATCACAGCGTTTAAAGACAGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAGACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCTGGATGAGAAAGCTGCTTATCCTCGTGTCAATGATCTATCCACCGCTACATTAGAAGATCCTGCTGTTTGAATACTTGTAACGTTTTAATTTCAGTTCGGGGATTTTAGGTGCTAGATGAAGATATTGCAGTGATTAGCATTAAAAATTGTGTATGTACTTTAATCGAAAGATATTTGTTGAAATTGATATCCATTTCCTCGTAGATAGCTCTTCCGTTGGTTTTATACTCATGTACAAAAAGATTTGTGAATACAGTCACCAATTCTTTTCTTAGACCGCTTGTTAAGGTATTCTGTTGCATATTAAGGTTTACTATGCCATGATGATGGTATAAGTTAGCCCTAGTCTGACGACCCTATCATTATTTTCGA

>Glyma13g31720.5   sequence type=transcript   gene model=Glyma13g31720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTCAGGTCCAGTTGAGACCCGGTAGAAAACGAAGCGGATCCGAACTCAATGAGGAAAACCGAAGCAAATATCTGTATATCACATTGAAACAGAACTCTAGAAGCAACTTGGAAGAAAGGGATCGCCGGCGGCACCCTCCGAAGACGGAGATACACCCACTCACAACCACTTTCCCGGAAAATAACCACCGACCACAATTTCTTGGAATTTATTTTGCGGTGAATTCACTTTCTGCCTTTAATTTTTTCATCCCCTCGCGTGCGGATTTTGTTTTCCCCTTCCGCCGATAGGGTTTTGATGATTTTAATTTTGTTGATTTGGAAGGATGTGGAAACTTAAAATGCGACTGCTTTTTGATTTTTTTTAAATTGTTGATGCTGACCTACGACCTGCAGTTTTGGTGCCTTTGTTGTTCGGATTTTCAGGTGAGGGAGCTCGTCTCGTGTGTCGTTTAGGGCTAGAAATGGGGTTTAAGTGGGTGCACTGATGTCATTGTTCTTGCTTGAGATTCGTCAACTTGCAGAAATCGAGGCAATGGCTGCATCTAAGAAACTGATAACAAGAGAAGAGTGGGAGAAGAAGCTTAGTGATGTGAAGATTAGAAAAGAAGACATGAATAAATTGGTAATGAATTTCCTTGTCACCGAAGGCTATGTTGAAGCTGCTGAGAAATTTCGAATGGAGTCTGGAACTGAACCAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAGTACAAAGTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAGATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGATAGAACTCATCCGGAATGGAAAAGTAGAAGAAGCTCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAATCAAAGTTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAAGATGTTTCTAACTGTCCTGTTGGAGAGCTGCTTGACATATCACAGCGTTTAAAGACAGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAGACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCTGGATGAGAAAGCTGCTTATCCTCGTGTCAATGATCTATCCACCGCTACATTAGAAGATCCTGCTGTTTGAATACTTGTAACGTTTTAATTTCAGTTCGGGGATTTTAGGTGCTAGATGAAGATATTGCAGTGATTAGCATTAAAAATTGTGTATGTACTTTAATCGAAAGATATTTGTTGAAATTGATATCCATTTCCTCGTAGATAGCTCTTCCGTTGGTTTTATACTCATGTACAAAAAGATTTGTGAATACAGTCACCAATTCTTTTCTTAGACCGCTTGTTAAGGTA

Coding sequences of Glyma13g31720

Limit To All Plant Sequences

>Glyma13g31720.1   sequence type=CDS   gene model=Glyma13g31720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATTGTTCTTGCTTGAGATTCGTCAACTTGCAGAAATCGAGGCAATGGCTGCATCTAAGAAACTGATAACAAGAGAAGAGTGGGAGAAGAAGCTTAGTGATGTGAAGATTAGAAAAGAAGACATGAATAAATTGGTAATGAATTTCCTTGTCACCGAAGGCTATGTTGAAGCTGCTGAGAAATTTCGAATGGAGTCTGGAACTGAACCAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAGTACAAAGTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAGATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGATAGAACTCATCCGGAATGGAAAAGTAGAAGAAGCTCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAATCAAAGTTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAAGATGTTTCTAACTGTCCTGTTGGAGAGCTGCTTGACATATCACAGCGTTTAAAGACAGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAGACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCTGGATGAGAAAGCTGCTTATCCTCGTGTCAATGATCTATCCACCGCTACATTAGAAGATCCTGCTGTTTGA

>Glyma13g31720.4   sequence type=CDS   gene model=Glyma13g31720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATTGTTCTTGCTTGAGATTCGTCAACTTGCAGAAATCGAGGCAATGGCTGCATCTAAGAAACTGATAACAAGAGAAGAGTGGGAGAAGAAGCTTAGTGATGTGAAGATTAGAAAAGAAGACATGAATAAATTGGTAATGAATTTCCTTGTCACCGAAGGCTATGTTGAAGCTGCTGAGAAATTTCGAATGGAGTCTGGAACTGAACCAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAGTACAAAGTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAGATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGATAGAACTCATCCGGAATGGAAAAGTAGAAGAAGCTCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAATCAAAGTTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAAGATGTTTCTAACTGTCCTGTTGGAGAGCTGCTTGACATATCACAGCGTTTAAAGACAGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAGACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCTGGATGAGAAAGCTGCTTATCCTCGTGTCAATGATCTATCCACCGCTACATTAGAAGATCCTGCTGTTTGA

>Glyma13g31720.5   sequence type=CDS   gene model=Glyma13g31720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATTGTTCTTGCTTGAGATTCGTCAACTTGCAGAAATCGAGGCAATGGCTGCATCTAAGAAACTGATAACAAGAGAAGAGTGGGAGAAGAAGCTTAGTGATGTGAAGATTAGAAAAGAAGACATGAATAAATTGGTAATGAATTTCCTTGTCACCGAAGGCTATGTTGAAGCTGCTGAGAAATTTCGAATGGAGTCTGGAACTGAACCAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAGTACAAAGTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAGATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGATAGAACTCATCCGGAATGGAAAAGTAGAAGAAGCTCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAATCAAAGTTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAAGATGTTTCTAACTGTCCTGTTGGAGAGCTGCTTGACATATCACAGCGTTTAAAGACAGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAGACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCTGGATGAGAAAGCTGCTTATCCTCGTGTCAATGATCTATCCACCGCTACATTAGAAGATCCTGCTGTTTGA

Predicted protein sequences of Glyma13g31720

Limit To All Plant Sequences

>Glyma13g31720.1   sequence type=predicted peptide   gene model=Glyma13g31720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLFLLEIRQLAEIEAMAASKKLITREEWEKKLSDVKIRKEDMNKLVMNFLVTEGYVEAAEKFRMESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLCAQNQLDEKAAYPRVNDLSTATLEDPAV*

>Glyma13g31720.4   sequence type=predicted peptide   gene model=Glyma13g31720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLFLLEIRQLAEIEAMAASKKLITREEWEKKLSDVKIRKEDMNKLVMNFLVTEGYVEAAEKFRMESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLCAQNQLDEKAAYPRVNDLSTATLEDPAV*

>Glyma13g31720.5   sequence type=predicted peptide   gene model=Glyma13g31720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLFLLEIRQLAEIEAMAASKKLITREEWEKKLSDVKIRKEDMNKLVMNFLVTEGYVEAAEKFRMESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLCAQNQLDEKAAYPRVNDLSTATLEDPAV*

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