Glyma13g31690 - SoyBase

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Report for Sequence Feature Glyma13g31690

Feature Type:	gene_model
Chromosome:	Gm13
Start:	34076479
stop:	34081157
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g31690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11080	AT	Annotation by Michelle Graham. TAIR10: serine carboxypeptidase-like 31 \| chr1:3694809-3697759 REVERSE LENGTH=495	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004185	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity	SoyBase	N/A	ISS
KOG1282	KOG	Serine carboxypeptidases (lysosomal cathepsin A)	JGI		ISS
PTHR11802	Panther	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	JGI		ISS
PTHR11802:SF8	Panther	SERINE CARBOXYPEPTIDASE II (CARBOXYPEPTIDASE D) (PLANTS)	JGI		ISS
PF00450	PFAM	Serine carboxypeptidase	JGI		ISS
UniRef100_G7INY9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine carboxypeptidase-like protein n=1 Tax=Medicago truncatula RepID=G7INY9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B0C7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B0C7 related cluster n=1 Tax=unknown RepID=UPI000233B0C7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g31690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g31690

Paralog	Evidence	Comments
Glyma15g07600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g31690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g243500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g31690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g31690

Limit To All Plant Sequences

>Glyma13g31690.1   sequence type=CDS   gene model=Glyma13g31690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAATATAATCTACACTTTAGTTTTGATACTTTTTCTATCTCTGAAGGCCAGTAGTGTTTCTTCTAGAGATAGACAATGGGGCGGTGTGAGGAGAAAATTGAGCTTTGGGGATCATAATAATGGTGATCTTGTGACTAACTTGCCTGGCCAGCCTCCTGTAGATTTTCAGCACTATGCTGGATATGTCACAGTCAACGAAACCAATGGCCGAGCACTCTTTTATTGGTTCTATGAGGCCATGACCAAGCCTCAAGACAAACCATTAGTGCTGTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGAGCAACACAGGAGATTGGCCCATTTTTAGTGGACACCGATGGCAAGGGCCTTAAATTCAATAACTTTTCATGGAACAAAGAGGCCAACATTTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCCTATTCAAATACAACCAGCGAATATGCACGACTGGGAGATGACTTCACAGCTAATGATGCTTACACTTTTCTGCACAATTGGTTCCTCAAGTTTCCATCATATATAACAAGGACATTTTATATAGCAGGAGAGAGCTATGCAGGAAAGTATGTACCGGAGCTAGCTGAACTCATCCACGATAGAAACAAGGACCCTTCCCTTCACATTGATCTCAAGGGAATTTTGCTGGGCAACCCTGAAACATCTGATGCTGAGGACTGGTCAGGTATGGTTGATTATGCTTGGAGCCATGCAGTGATATCTGATGAAACTTACAAAACTATCAAAGCAAGCTGTGAGTTCAATAGCAGTGATCCGTGGAGTAACAAAGATTGTACTCAAGGAGTGGATGAAACACTCAAACAGTACAATGAAATTGATATCTACAGCCTCTACACCTCTGTCTGCTTCGCTAGTACAGCGCGGTCAAACGATCAATCCAAGAAAATGGTGATGAATCGCTCATCTAAAATGATGCCACGGATCATGGGAGGTTATGATCCATGTTTGGATAATTATGCTAAAACTTTTTATAATAGACCAGATGTTCAGAAGGCACTCCATGCCAGTGATGGTTACAATCTGAGGAATTGGAGTATTTGCAATGAAAACATATTCAAGGGCTGGGCACAATCGAAGCCTTCTGTTATCCCAATCTACAAGAAGCTTATTTCAGCAGGACTTAGGATTTGGGTTTACAGTGGAGACACTGATGGTAGGGTGCCAGTGCTATCAACAAGATACAGCTTAAGTATTCTAGGTTTGCCTATCACTAAGAGATGGAGGCCTTGGTACCATGAAAAGGAGGTTAGTGGGTGGTATCAAGAATACGAGGGGCTTACGTTTGCGACATTTCGGGGAGCTGGCCATGCAGTGCCTTGTTTCAAACCAAGCAACTCATTGGCATTCTTCTATTCCTTTCTTCTTGGAGAATCACCACCGTCCACAAAATAA

Predicted protein sequences of Glyma13g31690

Limit To All Plant Sequences

>Glyma13g31690.1   sequence type=predicted peptide   gene model=Glyma13g31690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNIIYTLVLILFLSLKASSVSSRDRQWGGVRRKLSFGDHNNGDLVTNLPGQPPVDFQHYAGYVTVNETNGRALFYWFYEAMTKPQDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGKGLKFNNFSWNKEANILFLESPVGVGFSYSNTTSEYARLGDDFTANDAYTFLHNWFLKFPSYITRTFYIAGESYAGKYVPELAELIHDRNKDPSLHIDLKGILLGNPETSDAEDWSGMVDYAWSHAVISDETYKTIKASCEFNSSDPWSNKDCTQGVDETLKQYNEIDIYSLYTSVCFASTARSNDQSKKMVMNRSSKMMPRIMGGYDPCLDNYAKTFYNRPDVQKALHASDGYNLRNWSICNENIFKGWAQSKPSVIPIYKKLISAGLRIWVYSGDTDGRVPVLSTRYSLSILGLPITKRWRPWYHEKEVSGWYQEYEGLTFATFRGAGHAVPCFKPSNSLAFFYSFLLGESPPSTK*

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