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Report for Sequence Feature Glyma13g31630

Feature Type:gene_model
Chromosome:Gm13
Start:34019427
stop:34019886
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g31630
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G61105AT Annotation by Michelle Graham. TAIR10: Toll-Interleukin-Resistance (TIR) domain family protein | chr1:22513616-22514492 REVERSE LENGTH=188 SoyBaseE_val: 2.00E-35ISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
PF01582PFAM TIR domain JGI ISS
UniRef100_G7INZ8UniRef Annotation by Michelle Graham. Most informative UniRef hit: TMV resistance protein N n=2 Tax=Medicago truncatula RepID=G7INZ8_MEDTR SoyBaseE_val: 8.00E-39ISS
UniRef100_I1M288UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M288_SOYBN SoyBaseE_val: 1.00E-57ISS

Expression Patterns of Glyma13g31630
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g31630 not represented in the dataset
Glyma13g31630 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g31630 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g242900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g31630
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g31630
>Glyma13g31630.2   sequence type=CDS   gene model=Glyma13g31630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACCTGGCCATAAGCTATTTGAGCATATCAACAAAGCCATTCATAGCTCCAAGGTTGGTGTTGCTGTCCCCACAAATCGTTATTGTAATTCCTACTTCTGTCTTCACGAACTTGCCCTTCTTCATGAGTCCAAGAAAAGGGTTGTCCCTATCTTTTATGACATCAAGCCCTCACAGCTTCAGGTTGAGGGCAACGCACGTTGTCCACCTCAAGTGCTCCAAACGTTCACGTCTGCTCTGGAAGAAACTAAATACACTGTAGGAGTCACCTTTGACTCTTTAAATGGGTACTGGATGGAGCTGCAAAGACGGATTTAG
Predicted protein sequences of Glyma13g31630
>Glyma13g31630.2   sequence type=predicted peptide   gene model=Glyma13g31630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKPGHKLFEHINKAIHSSKVGVAVPTNRYCNSYFCLHELALLHESKKRVVPIFYDIKPSQLQVEGNARCPPQVLQTFTSALEETKYTVGVTFDSLNGYWMELQRRI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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