SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G61100 | AT | Annotation by Michelle Graham. TAIR10: disease resistance protein (TIR class), putative | chr1:22508831-22512122 REVERSE LENGTH=807 | SoyBase | E_val: 1.00E-150 | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| UniRef100_E4MXT0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-24-N23 n=1 Tax=Eutrema halophilum RepID=E4MXT0_THEHA | SoyBase | E_val: 9.00E-149 | ISS |
| UniRef100_UPI000233B0C5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B0C5 related cluster n=1 Tax=unknown RepID=UPI000233B0C5 | SoyBase | E_val: 0 | ISS |
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Glyma13g31620 not represented in the dataset |
Glyma13g31620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g07671 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g242800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g31620.1 sequence type=CDS gene model=Glyma13g31620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCCAATTCCAAGGCCATTTTGGATTATGCTTTGTTTCAACTCACTCCAACCAGAACCAGATGTGAGTTGTTAGTGTTTTGTGGAGGTGTTCATCAGAAAATAGCTTCTGGGTTGTTTGAGCCTTTCGTTTCTCATCTCAAATTCCTCAAAGATGAGATCTCCAAAGGTGGATACTCAATTAAGCTTCTGCCTCCCAACAACGGTGCCTTCTGGTTCACCAGAGCCACGTTTGAGAGATTTGTGCGCTTTGTCAGCACACCCGCTATTCTGGAGAGGTTTGCTAGCCTTGAAAATGAAATTCTTCAGATCGAAAGTTCTTTTCAAGCTAATGCTCTATCGATGTCCATTGCAACTCCAGATGAAGGATCCGTACCACAAGCCAATGGCATCACAAAGAGGTTAAGTGATTCTACAAAGTTAAATGATGTACTTGAAGGTGTTGACAATAAAGAAGAGGAAAACTCAAAGGTTTCACTGCATCGTCTGTTAGAGTCTCGAATAGCACTACTCCGGAAGGAGCAAGCAATGGCTTATACACGTGGTCTTGTTGCTGGATTTGAAATTGACAGCATTGATGATCTCATATACTTCGCAAATGCATTTGGAGCAGTCCGTTTAAGGGAAGCCTGCATTAATTTTAAGGAATTATGGAAGAAAAAGCATGCAGATGATCTTTGGATAAAAGAAGTAGCTGCTATGCAGTCAAGCTTACCACCAGCACTCTCATTGTCTGGATCATCAGGAATTATACTGGCAAATGATATAACCACCCATAATAGCTCTAAGGACAGCATTGCTTCTGGTGACGAAAATGTATCTCTGGAAACATCGAATTCTACTTTAAACAGAAAAGAAGATGTGAACCTGCCTACACCAGATCAGAAACCTTCACATATGGCAAATGTTCATATGCCAATGCCCTGGCCTTACAATGTACCTCCATATATGTATAATCTTCAAAATCCGCAAATGCCTTCATACCAAGGATATCCTATGACTAATATGCAGTCTGTTCCTCCTTACCTTGTACCAAATATGCAATGGTCTCCTGAACTGGGAGTGAATCAGAAATCATCAGCAACCAAAAGGGATAAATCTCACAAGAAAAGAGCTGAAGAATATGAAGACCAGCAGACTGAGTCAAGTGAACCTGATTCTGGGAGTGAATCTGATTCAGATAAACAGAATCACTCCAGTCATTCTTCGAAGGATGATCTGAAGAGGAAAAAGCACAGAAGAAAGTCATCCGGAACAGTTGTGATTCGTAACATCAACTACATCACTCCAAAAAGGAGAAATGGAAATGAGGATGGAGGCTCTGATGAATCTTTAGAAGATGATGATGTCATCGATGACGAAACCATCAAACAAAAGGTTGGTGTTGCACTTGAATCTTTGCAAAAGGTCCATAAAGGTGAAAAACGTGCTAATGGAAAAAAAGCAGCAGTGCGGCACAATGTAACTAAATCACGTGATGCGACTGCAGAGGATCTCACTGAAAACTTGAGTGATGCCTCTGAAGGAGGAAAGAAAAATGACAACTGGGATGCATTCCAGAACCTTTTGAAGATTGATGAGGGGACCGGAACTGATGGACCAGAAAGGATGCAGTCAATTGATGTCCAGGATGAACATTTTGTGTTGAGAAGCTCGGAAGAAAGAATGCCAAACGGTGCTAGTTCATCTCCTAAATTTGATTTCAAACAAGTTTTGAAGAATCCTAAAGTTCCAAATGACTCCTTTATTGTGACTCGGAGAGATGGAGGAAATGAAGGTGGCTCCAAGCTGGATGAGTATGTAGACAAGTGTGGTCCAGTTACAAAGAGCAGGGAAAATATTGGTGAAGAAATGCTGTTATCACATAGATCAAAAGAACACGGTAATGAACTCAGTGATCCATTATCTACTTTTGCTGCTGACTCATTACAAACAAAGGGCAGAACAGAAGATGATTGGTTTGTTGTTGATAATTTGGAAAAGATGAGGAGCGCTGACCCCTCAATTGTGCCTGCAGTGTTTGATGGTGATTACACTTCATCAGTGAACGGTCATTCCCAATATGAGAAAAGAAGTGAACGAATTCTCATTGACGATTCCTTCATGATACAGGGTCAATTAGTAGATAATGATCGTTCTGACTCACAATGGAAGACGGACTTAAGTATGGTTGCAGATCTATCTGCTGCCAAGAAGCTTGAAAGTGATGCAGCAGCTGCTTCAAATGAGAAGAACCAGGAGCCAAGTGACCTCTTTGTAGTTCTAAAACGGGATTCTGGATTGGACTCTGTTGAGGCCTCACGGACAATGGACTATGAAATCGACTTTTCCTTCTCGGAGACTAATAGAAGATCCTCCATTGATGATTCTCATGAAAAGGTGAATGACAGCCTTCCTGTTAGTCCTGCGAAAACCAAAGTTTCTGGAACAAGAAGTTCTGAAAAAGATGGCAAGTCAAAAGCGCTGCGATGTTCCTCTGGGAAGGGCAAGCCTGAAATCATGTCTAGGGCCAGAAAGCCAGCTCTCCCTAAAAAGCCTGTAGTTCAGAAGAGCAAAAGGGAACAGGAAGATGAGATTAGACAGAAGATGGAAGAATTGCGGAACGAACGTCAGAGGAGAATTGCTGAAAGAACTGCATCCTCTGGTGTTGGTCGTGCCGCGACAAAGAAAGACCAAATTGAAGGTAAAACAGCAAGGATTTCTGCCAAGAGTGACAAGAATAAGGGAATCAGTTCTGTCAAGGTCAGGGGAATTTAG
>Glyma13g31620.1 sequence type=predicted peptide gene model=Glyma13g31620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSNSKAILDYALFQLTPTRTRCELLVFCGGVHQKIASGLFEPFVSHLKFLKDEISKGGYSIKLLPPNNGAFWFTRATFERFVRFVSTPAILERFASLENEILQIESSFQANALSMSIATPDEGSVPQANGITKRLSDSTKLNDVLEGVDNKEEENSKVSLHRLLESRIALLRKEQAMAYTRGLVAGFEIDSIDDLIYFANAFGAVRLREACINFKELWKKKHADDLWIKEVAAMQSSLPPALSLSGSSGIILANDITTHNSSKDSIASGDENVSLETSNSTLNRKEDVNLPTPDQKPSHMANVHMPMPWPYNVPPYMYNLQNPQMPSYQGYPMTNMQSVPPYLVPNMQWSPELGVNQKSSATKRDKSHKKRAEEYEDQQTESSEPDSGSESDSDKQNHSSHSSKDDLKRKKHRRKSSGTVVIRNINYITPKRRNGNEDGGSDESLEDDDVIDDETIKQKVGVALESLQKVHKGEKRANGKKAAVRHNVTKSRDATAEDLTENLSDASEGGKKNDNWDAFQNLLKIDEGTGTDGPERMQSIDVQDEHFVLRSSEERMPNGASSSPKFDFKQVLKNPKVPNDSFIVTRRDGGNEGGSKLDEYVDKCGPVTKSRENIGEEMLLSHRSKEHGNELSDPLSTFAADSLQTKGRTEDDWFVVDNLEKMRSADPSIVPAVFDGDYTSSVNGHSQYEKRSERILIDDSFMIQGQLVDNDRSDSQWKTDLSMVADLSAAKKLESDAAAASNEKNQEPSDLFVVLKRDSGLDSVEASRTMDYEIDFSFSETNRRSSIDDSHEKVNDSLPVSPAKTKVSGTRSSEKDGKSKALRCSSGKGKPEIMSRARKPALPKKPVVQKSKREQEDEIRQKMEELRNERQRRIAERTASSGVGRAATKKDQIEGKTARISAKSDKNKGISSVKVRGI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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