Glyma13g31520 - SoyBase

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Report for Sequence Feature Glyma13g31520

Feature Type:	gene_model
Chromosome:	Gm13
Start:	33936714
stop:	33940342
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g31520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G16700	AT	Annotation by Michelle Graham. TAIR10: Alpha-helical ferredoxin \| chr1:5710012-5711694 FORWARD LENGTH=222	SoyBase	E_val: 3.00E-142	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005747	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008137	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADH dehydrogenase (ubiquinone) activity	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016651	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
GO:0051536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding	SoyBase	N/A	ISS
GO:0051539	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 4 iron, 4 sulfur cluster binding	SoyBase	N/A	ISS
KOG3256	KOG	NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit	JGI		ISS
PTHR10849	Panther	NADH-UBIQUINONE OXIDOREDUCTASE 1, CHAIN 1	JGI		ISS
PF00037	PFAM	4Fe-4S binding domain	JGI		ISS
UniRef100_G7ZWQ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NADH-quinone oxidoreductase subunit I n=2 Tax=Medicago truncatula RepID=G7ZWQ4_MEDTR	SoyBase	E_val: 1.00E-149	ISS
UniRef100_I1M277	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M277_SOYBN	SoyBase	E_val: 3.00E-162	ISS

Expression Patterns of Glyma13g31520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g31520

Paralog	Evidence	Comments
Glyma15g07790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g31520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g241500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g31520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g31520

Limit To All Plant Sequences

>Glyma13g31520.3   sequence type=transcript   gene model=Glyma13g31520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATCCTTCTATTCTTCTATTTCTTCAGTTTTCTCAATATTAACTTGTATTTGGTTCAACCACTACTTGTTTCCCCCCCCCTTTAATTCGATATTTCTTCACACTTTTTCGGTTCGAATCCTTGTAAATAATTGTTTCGCTTCAACTTAATCATTCAATTTGAAATAAATAGTAAAACTGCGTTTGATTCTCCAATGTTTTCATTTCCAGGTTTAGGGAATGGCTGCAATCTTAGCTCGAAAATCACTCCTTGCTCTTCGTGCGCGCCAATTGGCTGTAAGCGGTCAAGGGCTGCACAGCTCCCAATACTATGGCCTTCGGTTAAGTGCACACTCCTTCTCTACCAAAAGAGAGGATGAGGAAAGGGAGCAACTCGCAAAGGACATTTCAAAGGATTGGAGTTCTGTCTTTGAACGTAGCATTAACACTCTCTTTCTCACTGAAATGGTTCGAGGACTAATGCTGACTCTGAAATACTTCTTTGAAACAAAAGTTACAATCAATTATCCATTTGAGAAAGGCCCTTTGAGCCCTCGTTTCCGTGGTGAACATGCACTCCGGCGATATCCAACAGGGGAGGAACGTTGTATTGCTTGCAAACTTTGTGAGGCTATATGTCCTGCACAAGCAATCACAATTGAGGCTGAGGAGCGAGAAGATGGCAGCCGCAGGACAACTCGGTATGATATTGACATGACCAAGTGCATCTATTGTGGATTTTGTCAAGAGGCATGCCCTGTTGATGCCATTGTCGAAGGACCAAACTTTGAATTTGCTACTGAGACTCATGAGGAGCTTTTATATGACAAGGAGAAGCTGCTTGAAAATGGGGACCGATGGGAGACTGAAATTGCAGAGAACCTGAGATCTGAAAGCCTTTATCGCTGAAATTTTCCATGTGATCCTTGCCTGTTGCTTTTTCCGTCTAATTGGGCAATGATAAATAAAATGACCAGCGCATGATTTTAAAGAACTGTATGCATACACGATTGTTACATCAGTTTTTTTTTTCTTTTGTCAATGTTTGCGTTGCTGTTAAGTGTACAATATTGATGACTTTTATCTCCTTGAGATCTTGAACAAATGTGGAAATAATTGAATTTTTCAACAAATTGATGCCCTTGAAGCATACTAATTGATCCTTAGAAAATGGAAGCACTGATGCAGTGCAGCTTTCAGAATCTAAATTTATTAAGGATTCGGTGGTTGACAGCATGTATCAATTCTTATAATCATAAACTGCACCACATTCTTGGATGTCTTTTTACTTTA

>Glyma13g31520.4   sequence type=transcript   gene model=Glyma13g31520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTCCCCCCCCCTTTAATTCGATATTTCTTCACACTTTTTCGGTTTAGGGAATGGCTGCAATCTTAGCTCGAAAATCACTCCTTGCTCTTCGTGCGCGCCAATTGGCTGTAAGCGGTCAAGGGCTGCACAGCTCCCAATACTATGGCCTTCGGTTAAGTGCACACTCCTTCTCTACCAAAAGAGAGGATGAGGAAAGGGAGCAACTCGCAAAGGACATTTCAAAGGATTGGAGTTCTGTCTTTGAACGTAGCATTAACACTCTCTTTCTCACTGAAATGGTTCGAGGACTAATGCTGACTCTGAAATACTTCTTTGAAACAAAAGTTACAATCAATTATCCATTTGAGAAAGGCCCTTTGAGCCCTCGTTTCCGTGGTGAACATGCACTCCGGCGATATCCAACAGGGGAGGAACGTTGTATTGCTTGCAAACTTTGTGAGGCTATATGTCCTGCACAAGCAATCACAATTGAGGCTGAGGAGCGAGAAGATGGCAGCCGCAGGACAACTCGGTATGATATTGACATGACCAAGTGCATCTATTGTGGATTTTGTCAAGAGGCATGCCCTGTTGATGCCATTGTCGAAGGACCAAACTTTGAATTTGCTACTGAGACTCATGAGGAGCTTTTATATGACAAGGAGAAGCTGCTTGAAAATGGGGACCGATGGGAGACTGAAATTGCAGAGAACCTGAGATCTGAAAGCCTTTATCGCTGAAATTTTCCATGTGATCCTTGCCTGTTGCTTTTTCCGTCTAATTGGGCAATGATAAATAAAATGACCAGCGCATGATTTTAAAGAACTGTATGCATACACGATTGTTACATCAGTTTTTTTTTTCTTTTGTCAATGTTTGCGTTGCTGTTAAGTGTACAATATTGATGACTTTTATCTCCTTGAGATCTTGAACAAATGTGGAAATAATTGAATTTTTCAACAAATTGATGCCCTTGAAGCATACTAATTGATCCTTAGAAAATGGAAGCACTGATGCAGTGCAGCTTTCAGAATCTAAATTTATTAAGGATTCGGTGGTTGACAGCATGTATCAATTCTTATAATCATAAACTGCACCACATTCTTGGATGTCTTTTTACTTTA

Coding sequences of Glyma13g31520

Limit To All Plant Sequences

>Glyma13g31520.1   sequence type=CDS   gene model=Glyma13g31520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCAATCTTAGCTCGAAAATCACTCCTTGCTCTTCGTGCGCGCCAATTGGCTGTAAGCGGTCAAGGGCTGCACAGCTCCCAATACTATGGCCTTCGGTTAAGTGCACACTCCTTCTCTACCAAAAGAGAGGATGAGGAAAGGGAGCAACTCGCAAAGGACATTTCAAAGGATTGGAGTTCTGTCTTTGAACGTAGCATTAACACTCTCTTTCTCACTGAAATGGTTCGAGGACTAATGCTGACTCTGAAATACTTCTTTGAAACAAAAGTTACAATCAATTATCCATTTGAGAAAGGCCCTTTGAGCCCTCGTTTCCGTGGTGAACATGCACTCCGGCGATATCCAACAGGGGAGGAACGTTGTATTGCTTGCAAACTTTGTGAGGCTATATGTCCTGCACAAGCAATCACAATTGAGGCTGAGGAGCGAGAAGATGGCAGCCGCAGGACAACTCGGTATGATATTGACATGACCAAGTGCATCTATTGTGGATTTTGTCAAGAGGCATGCCCTGTTGATGCCATTGTCGAAGGACCAAACTTTGAATTTGCTACTGAGACTCATGAGGAGCTTTTATATGACAAGGAGAAGCTGCTTGAAAATGGGGACCGATGGGAGACTGAAATTGCAGAGAACCTGAGATCTGAAAGCCTTTATCGCTGA

>Glyma13g31520.3   sequence type=CDS   gene model=Glyma13g31520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCAATCTTAGCTCGAAAATCACTCCTTGCTCTTCGTGCGCGCCAATTGGCTGTAAGCGGTCAAGGGCTGCACAGCTCCCAATACTATGGCCTTCGGTTAAGTGCACACTCCTTCTCTACCAAAAGAGAGGATGAGGAAAGGGAGCAACTCGCAAAGGACATTTCAAAGGATTGGAGTTCTGTCTTTGAACGTAGCATTAACACTCTCTTTCTCACTGAAATGGTTCGAGGACTAATGCTGACTCTGAAATACTTCTTTGAAACAAAAGTTACAATCAATTATCCATTTGAGAAAGGCCCTTTGAGCCCTCGTTTCCGTGGTGAACATGCACTCCGGCGATATCCAACAGGGGAGGAACGTTGTATTGCTTGCAAACTTTGTGAGGCTATATGTCCTGCACAAGCAATCACAATTGAGGCTGAGGAGCGAGAAGATGGCAGCCGCAGGACAACTCGGTATGATATTGACATGACCAAGTGCATCTATTGTGGATTTTGTCAAGAGGCATGCCCTGTTGATGCCATTGTCGAAGGACCAAACTTTGAATTTGCTACTGAGACTCATGAGGAGCTTTTATATGACAAGGAGAAGCTGCTTGAAAATGGGGACCGATGGGAGACTGAAATTGCAGAGAACCTGAGATCTGAAAGCCTTTATCGCTGA

>Glyma13g31520.4   sequence type=CDS   gene model=Glyma13g31520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCAATCTTAGCTCGAAAATCACTCCTTGCTCTTCGTGCGCGCCAATTGGCTGTAAGCGGTCAAGGGCTGCACAGCTCCCAATACTATGGCCTTCGGTTAAGTGCACACTCCTTCTCTACCAAAAGAGAGGATGAGGAAAGGGAGCAACTCGCAAAGGACATTTCAAAGGATTGGAGTTCTGTCTTTGAACGTAGCATTAACACTCTCTTTCTCACTGAAATGGTTCGAGGACTAATGCTGACTCTGAAATACTTCTTTGAAACAAAAGTTACAATCAATTATCCATTTGAGAAAGGCCCTTTGAGCCCTCGTTTCCGTGGTGAACATGCACTCCGGCGATATCCAACAGGGGAGGAACGTTGTATTGCTTGCAAACTTTGTGAGGCTATATGTCCTGCACAAGCAATCACAATTGAGGCTGAGGAGCGAGAAGATGGCAGCCGCAGGACAACTCGGTATGATATTGACATGACCAAGTGCATCTATTGTGGATTTTGTCAAGAGGCATGCCCTGTTGATGCCATTGTCGAAGGACCAAACTTTGAATTTGCTACTGAGACTCATGAGGAGCTTTTATATGACAAGGAGAAGCTGCTTGAAAATGGGGACCGATGGGAGACTGAAATTGCAGAGAACCTGAGATCTGAAAGCCTTTATCGCTGA

Predicted protein sequences of Glyma13g31520

Limit To All Plant Sequences

>Glyma13g31520.1   sequence type=predicted peptide   gene model=Glyma13g31520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAILARKSLLALRARQLAVSGQGLHSSQYYGLRLSAHSFSTKREDEEREQLAKDISKDWSSVFERSINTLFLTEMVRGLMLTLKYFFETKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR*

>Glyma13g31520.3   sequence type=predicted peptide   gene model=Glyma13g31520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAILARKSLLALRARQLAVSGQGLHSSQYYGLRLSAHSFSTKREDEEREQLAKDISKDWSSVFERSINTLFLTEMVRGLMLTLKYFFETKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR*

>Glyma13g31520.4   sequence type=predicted peptide   gene model=Glyma13g31520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAILARKSLLALRARQLAVSGQGLHSSQYYGLRLSAHSFSTKREDEEREQLAKDISKDWSSVFERSINTLFLTEMVRGLMLTLKYFFETKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR*

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