SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20760 | AT | Annotation by Michelle Graham. TAIR10: Clathrin light chain protein | chr2:8943279-8945108 REVERSE LENGTH=338 | SoyBase | E_val: 4.00E-79 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0007033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vacuole organization | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005198 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural molecule activity | SoyBase | N/A | ISS |
| KOG4031 | KOG | Vesicle coat protein clathrin, light chain | JGI | ISS | |
| PTHR10639 | Panther | CLATHRIN LIGHT CHAIN | JGI | ISS | |
| PTHR10639:SF0 | Panther | PROTEIN BINDING / PROTEIN TRANSPORTER/ STRUCTURAL | JGI | ISS | |
| PF01086 | PFAM | Clathrin light chain | JGI | ISS | |
| UniRef100_C6TG81 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TG81_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SKU1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Clathrin light chain 1 n=1 Tax=Arabidopsis thaliana RepID=CLC1_ARATH | SoyBase | E_val: 2.00E-76 | ISS |
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Glyma13g31500 not represented in the dataset |
Glyma13g31500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g07810 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g241300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g31500.1 sequence type=CDS gene model=Glyma13g31500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTTCCTTCGATGCCTTCGCCGACGACTTGAACGTCAACTCTTCTTCCACTCGCCAGCACGACGATGACGAGGACAACTTCTCTGGCTACGGCGGCTACTCCTCCTTCACCGGAGGATTCTCCGCCGACGGAGATGTCGCCGTCGATCACTCCGCCGCCGCGTCGCCGGAGATCTACGGCTTCACTGATTCGAATCCCGCTTACTCTCAGTCTCCCTTCGAATCGGCCACCGTAGAGAACGAAAACGGAAACGGATACGGCGACGGCGACGGTGTTTTTGTCTCCGACGGTCCGGTGCTTCCTCCGCCGACGGAGATGGAGCCGGAGGAAGGTTACGCTCTTCGCGAGTGGCGCCGTCAAAATGCCATTCAGCTAGAGGAGAAGGAGAAAAGGGAAAAAGAAATGAGATTGAAGATTATTGAAGAAGCTGAGGAGTATAAGGTGGCTTTCTATGAGAAGAGGAAGCTTAATGTTGAGACTAACAAGGTTCAGAATAGAGAAAGGGAGAAGTTATTCGTGGCCAATCAAGAGAAGTTTCACAAAGAGGCAGACAAAGCTTATTGGAAAACCATTGCAGAGCTCATTCCTCGTGAGGTTCCCAACATTGAAAAGAAAAGAGGCAAAAAGGATCAGGACAAGAAGCCATCAATTACGGTCATCCAAGGCCCAAAGCCTGGCAAACCCACGGATCTGTCTAGGTTGCGGCAAATACTGTTAAAGCTGAAGCATACACCACCACCTCACATGATTCCTCCACCACCGGCTCCTGCTAAAGACGCCAAAGATAATAAGGATGGAAAAGAGAAAGCAGCATCAAAAGCAACTGGATCTGCAGCAGAAGGTGCACCTGATTCACAGCCAAAGGATGCCACCTCTAATGGCCTCACAGAAGAACCCCAGAAAGAAGCTCCTGCCACTGAGGAGCAGCCTGCTGCATGA
>Glyma13g31500.1 sequence type=predicted peptide gene model=Glyma13g31500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSFDAFADDLNVNSSSTRQHDDDEDNFSGYGGYSSFTGGFSADGDVAVDHSAAASPEIYGFTDSNPAYSQSPFESATVENENGNGYGDGDGVFVSDGPVLPPPTEMEPEEGYALREWRRQNAIQLEEKEKREKEMRLKIIEEAEEYKVAFYEKRKLNVETNKVQNREREKLFVANQEKFHKEADKAYWKTIAELIPREVPNIEKKRGKKDQDKKPSITVIQGPKPGKPTDLSRLRQILLKLKHTPPPHMIPPPPAPAKDAKDNKDGKEKAASKATGSAAEGAPDSQPKDATSNGLTEEPQKEAPATEEQPAA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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