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Report for Sequence Feature Glyma13g31480

Feature Type:gene_model
Chromosome:Gm13
Start:33886793
stop:33900821
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g31480
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G04920AT Annotation by Michelle Graham. TAIR10: sensitive to freezing 6 | chr4:2497931-2504996 FORWARD LENGTH=1267 SoyBaseE_val: 0ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0007155GO-bp Annotation by Michelle Graham. GO Biological Process: cell adhesion SoyBaseN/AISS
GO:0009631GO-bp Annotation by Michelle Graham. GO Biological Process: cold acclimation SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0010104GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of ethylene mediated signaling pathway SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0016926GO-bp Annotation by Michelle Graham. GO Biological Process: protein desumoylation SoyBaseN/AISS
GO:0032922GO-bp Annotation by Michelle Graham. GO Biological Process: circadian regulation of gene expression SoyBaseN/AISS
GO:0045010GO-bp Annotation by Michelle Graham. GO Biological Process: actin nucleation SoyBaseN/AISS
GO:0048586GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of long-day photoperiodism, flowering SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0050665GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:1901672GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of systemic acquired resistance SoyBaseN/AISS
GO:2000022GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_F4JGZ1-2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Isoform 2 of Mediator of RNA polymerase II transcription subunit 16 n=1 Tax=Arabidopsis thaliana RepID=F4JGZ1-2 SoyBaseE_val: 0ISS
UniRef100_UPI000233AF64UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233AF64 related cluster n=1 Tax=unknown RepID=UPI000233AF64 SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g31480
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g31480
ParalogEvidenceComments
Glyma15g07831 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g31480 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g241100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g31480
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g31480
>Glyma13g31480.1   sequence type=CDS   gene model=Glyma13g31480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCAAATTGCTGCTATAAAGGACCCAGAGGAGGGTTCCGAGAAGAAGAAGAAGAGCAATGAAGCAATAAGTGGCGAAGAAAAAAAAGAGGATCCAATGGAGCAGGAAATGGAATCACTCACCCCTGCCACCGTCTTTTGCATTAGGCTCAAGCAACCCAAGTCCAATTTGCTCTACAAAATGAGTGTCCCTGAAATTTGTCGCAATTTCAGTGCTGTTTCCTGGTGTGGAAAACTGAATGCTATAGCTTGTGCTTCTGAAACGTGTGCAAGGATTCCAAGCTCAACCGGAAATCCACCATTTTGGATCCCTATACATATTGTGATCCCAGAGAGGCCGACTGAATGTGCAGTATTCAATGTCATTGCAGATTCTCCTCGTGATTCTGTCCAGTTCATCGAATGGTCCCCCACCTGCTGTCCTCGTGCATTATTGGTAGCAAATTTCCATGGGAGAGTAACTATTTGGACTCAACCGTCTCAAGGGCAAGCTAATCTTGCACTTGATGCTAGCTGCTGGTTGCGAGAGCATGAGTGGCGGCAAGATATTGCAGTTGTTACGAAGTGGCTATCAGGGGTCTCCCTGTATAGGTGGCTTTCATCTAAACCAAGTGGTCCTGCCAATTCAAGGTCAACATTTGAAGAAAAGTTTCTTTCACAACAATGTCAAACTTCAGCTAGATGGCCCAATTTTCTTTGTGTCTGTTCTGTGCTTTCGTCAGGCTCTGTTCAACTTCATTGGTCTCAGTGGCCTCCTCAGAATGCAACACCACCCAAATGGTTTTGCACTAGTAAAGGACCATTGGGTTGTGGCCCCAGTGGCATTATGGCTGGTGATGCTATCATTACAGACAGTGGTGCCATGCATGTGGCAGGTGTGCCAATTGTTAATCCATCCACCATTGTTGTTTGGGAGGTTATGCCTGGGCCTGGTAATGGTTTCCAAGTAATTCCTAGAACAAGTACCAATAATGGTGTTCCACCTCCTCTTAGCTCACCCAACTGGACTGGTTTTGCACCTTTAGCTGCATATTTATTTAGTTGGCAAGATCATCTATTATCTGAAGAAAAACAAGGGAAAAACCAGACAAACCAAAACCTTGGTGATTCTATACCACTTAACTGTTCACCGGTTTCAAATTTTTCAGCATATGTGAGTCCTGAAACTGCAGCTCAAACTGCTGCAACCACTACATGGGGTTCTGGTGTAACAGCAGTAGCTTTTGATCCAACTTGTGGTGGTTCCGTGATAGCTGTTGTGATAGCTGAGGGACAGTACATGTCCCCATATGATCCAGATGAGGGCCCATCAATCACAGGGTGGAGAGTGCAACTCTGGGAATCATCTTTACAGCATGTTGTCCTTCATCCAATATTTGGGAATCCCACTTCCAGTATGGGTGGACAGCCTCCTATGCAAACTGTTTGGCAGACCAAAGTGGACCTGAGCATTCCACCAACAAATGATTTCAAGAATCATCAAGCTCCAGCAGTTGGAATGAACACTGACATTCAAAAGGTATCCGAGTTTGGTTTTGATAAGTCAAAAAGGGTCAATTTTGATCCTTTTGATCTTCCAAGTGATGTTAGGGCACTTGCACGAATTGTATACTCTCCTCATGGTGGTGAAATTGCCATTGCTTTTCTTCGGGGTGGAGTGCACATCTTTTCTGGTCCAAATTTTGCACCTGTAGACAACTATCAGATTAGTGTTGGATCTGCAATTGCTGCTCCTGCTTTTTCTTCAACAAGCTGCTGTTCAGCTTCTGTTTGGCATGACCCAAGCAAAGATCAGACAATTTTGAAAATAATCCGGGTTCTTCCTCCTGCTATTCCAACTAGTCAAGTAAAGACCAACTCATCAAACTGGGAGCGTGCAATTGCTGAAAGGTTTTGGTGGAGCCTTTTGGTTGGAGTTAATTGGTGGGATGCTGTGGGCTGTACACAGAGTGCTGCTGAGGATGGTATTGTTTCACTCAACAGTGTTATCGCAGTCTTGGATGCAGACTTCCATTCTCTTCCTTCTGCTCAGCACAGACAACAGTATTGTCCTAGTCTAGACAGGATAAAGTGTAGGCTGCTTGAAGGGGCAAATGCTCAAGAGGTCAGGGCAATGGTTCTGGATATGCAAGCTAGGTTGTTGTTGGATATGCTTGGGAAGGGAATTGAGTCTGCTTTGATAAATCCTTCAGCTTTAGTGCCCGATCCATGGCAAGTATCTAGTGAGACATTAACCAGCATTGACCCTGAAGCAGTGGCTGTTGAACCTGCACTAGTTCCATGTGTTCAGGCTTATGTTGATTCAGTTCTTGATCTAGCTTCACACTTTATCACCCGGTTGCGGCGTTATGCAAGTTTCTGCCGTACATTGGCAAGTCATGCTGTAACTGCAGGGACGGGAAATAACCGAAATGTGGTAGCTAGTCCTGCCCAATGTTCTGCAACTCCTGCAACAAGTCAGGGAGGTCAAAATGGGACAACCAGTTCTAGTGGAAGCACACAGATGCAAGCTTGGGTACAAGGGGCCATTGCCAAGATTAGTAGCACTACTGACGGAGTGTCCAACCCGGTTCCTAACCCCCCCATCAGTGGTCCTTCGTCCTTTATGCCCATAAGCATTAATACAGGAACTTTCCCTGGAACACCTGCAGTTCGACTTATTGGGGACTGTCATTTCCTCCATAGATTATGCCAACTGTTGCTCTTCTGTTTTTTCTTTCGACGAGCACAACAACCCCGCTATGCGGGAGGTGTACAGAGAACTGCTGACACAAATCTACAAAAACCTCAACCTAATGCTTCTGTCCCTGGCAAGGTGGAGGAAATTGCAAAACCAGTGTCAACTGTGGTTAGGCCAGATGATGGTCAGGCTGGTCGAGTTAGTCAACTTGTGCCTGCATCAAAAGGAGGTGAAGAACCATCTCCAGGGCGTTCAAGAATTGGTACTGGAAATGCTGGCCTAGGATATACATATGAAGAGGTCAAGGTTCTTTTTCTAGTACTTATGGATCTATGTCGCCGAACTGCTGGCTTGCAACACCCGTTGCCAGTTTCTCAGGTGGGGAGTAATAACATACAGGTTCGGCTGCATTATATTGATGGGAACTACACTGTACTGCCTGAGGTTGTGGAAGCAGCCCTTGGCCCCCATATGCAGAACATGCCCCGTCCTAGAGGTGCTGATGCTGCTGGTCTTCTACTACGTGAGCTAGAACTCCATCCTCCAGCTGAAGAGTGGCATAGACGGAATATGTTTGGTGGACCTTGGTCTGATCCAGATGATTTGGATTCTGCAAATGATGCACCAAAACTTATTAGTTTAAATCCACTTGATTCCAGCTCATTGGAAAATTGTGATGTCTACTATGGAGCCAATGGCTTATGGCCAAGGAAGCGCAGGATGTCTGAACGAGATGCAGCTTTTGGGTTGAACACTTCTGTGGGCCTGGGAGCATACCTTGGTATAATGGGATCTCGAAGAGATGTTGTTACTGCATTGTGGAAAACTGGCCTTGAAGGGATCTGGTACAAGTGTATAAGATGTCTGCGGCAGACTTGTGCTTTTGCCTCACCAGCTTCCACCAATCTTCCCAGTCAAAATGACCGGGAGATTTGGTGGATCAGCCGCTGGGCTTATGGATGTCCAATGTGTGGTGGAACATGGGTTCGAGTTGTATAG
Predicted protein sequences of Glyma13g31480
>Glyma13g31480.1   sequence type=predicted peptide   gene model=Glyma13g31480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNQIAAIKDPEEGSEKKKKSNEAISGEEKKEDPMEQEMESLTPATVFCIRLKQPKSNLLYKMSVPEICRNFSAVSWCGKLNAIACASETCARIPSSTGNPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTCCPRALLVANFHGRVTIWTQPSQGQANLALDASCWLREHEWRQDIAVVTKWLSGVSLYRWLSSKPSGPANSRSTFEEKFLSQQCQTSARWPNFLCVCSVLSSGSVQLHWSQWPPQNATPPKWFCTSKGPLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEVMPGPGNGFQVIPRTSTNNGVPPPLSSPNWTGFAPLAAYLFSWQDHLLSEEKQGKNQTNQNLGDSIPLNCSPVSNFSAYVSPETAAQTAATTTWGSGVTAVAFDPTCGGSVIAVVIAEGQYMSPYDPDEGPSITGWRVQLWESSLQHVVLHPIFGNPTSSMGGQPPMQTVWQTKVDLSIPPTNDFKNHQAPAVGMNTDIQKVSEFGFDKSKRVNFDPFDLPSDVRALARIVYSPHGGEIAIAFLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDPSKDQTILKIIRVLPPAIPTSQVKTNSSNWERAIAERFWWSLLVGVNWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSAQHRQQYCPSLDRIKCRLLEGANAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQVSSETLTSIDPEAVAVEPALVPCVQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGTGNNRNVVASPAQCSATPATSQGGQNGTTSSSGSTQMQAWVQGAIAKISSTTDGVSNPVPNPPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRYAGGVQRTADTNLQKPQPNASVPGKVEEIAKPVSTVVRPDDGQAGRVSQLVPASKGGEEPSPGRSRIGTGNAGLGYTYEEVKVLFLVLMDLCRRTAGLQHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPDDLDSANDAPKLISLNPLDSSSLENCDVYYGANGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTALWKTGLEGIWYKCIRCLRQTCAFASPASTNLPSQNDREIWWISRWAYGCPMCGGTWVRVV*






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