SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G04920 | AT | Annotation by Michelle Graham. TAIR10: sensitive to freezing 6 | chr4:2497931-2504996 FORWARD LENGTH=1267 | SoyBase | E_val: 0 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0009631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cold acclimation | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0010104 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of ethylene mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein desumoylation | SoyBase | N/A | ISS |
| GO:0032922 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian regulation of gene expression | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0048586 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of long-day photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0050665 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:1901672 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of systemic acquired resistance | SoyBase | N/A | ISS |
| GO:2000022 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_F4JGZ1-2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Isoform 2 of Mediator of RNA polymerase II transcription subunit 16 n=1 Tax=Arabidopsis thaliana RepID=F4JGZ1-2 | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233AF64 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AF64 related cluster n=1 Tax=unknown RepID=UPI000233AF64 | SoyBase | E_val: 0 | ISS |
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Glyma13g31480 not represented in the dataset |
Glyma13g31480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g07831 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g241100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g31480.1 sequence type=CDS gene model=Glyma13g31480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCAAATTGCTGCTATAAAGGACCCAGAGGAGGGTTCCGAGAAGAAGAAGAAGAGCAATGAAGCAATAAGTGGCGAAGAAAAAAAAGAGGATCCAATGGAGCAGGAAATGGAATCACTCACCCCTGCCACCGTCTTTTGCATTAGGCTCAAGCAACCCAAGTCCAATTTGCTCTACAAAATGAGTGTCCCTGAAATTTGTCGCAATTTCAGTGCTGTTTCCTGGTGTGGAAAACTGAATGCTATAGCTTGTGCTTCTGAAACGTGTGCAAGGATTCCAAGCTCAACCGGAAATCCACCATTTTGGATCCCTATACATATTGTGATCCCAGAGAGGCCGACTGAATGTGCAGTATTCAATGTCATTGCAGATTCTCCTCGTGATTCTGTCCAGTTCATCGAATGGTCCCCCACCTGCTGTCCTCGTGCATTATTGGTAGCAAATTTCCATGGGAGAGTAACTATTTGGACTCAACCGTCTCAAGGGCAAGCTAATCTTGCACTTGATGCTAGCTGCTGGTTGCGAGAGCATGAGTGGCGGCAAGATATTGCAGTTGTTACGAAGTGGCTATCAGGGGTCTCCCTGTATAGGTGGCTTTCATCTAAACCAAGTGGTCCTGCCAATTCAAGGTCAACATTTGAAGAAAAGTTTCTTTCACAACAATGTCAAACTTCAGCTAGATGGCCCAATTTTCTTTGTGTCTGTTCTGTGCTTTCGTCAGGCTCTGTTCAACTTCATTGGTCTCAGTGGCCTCCTCAGAATGCAACACCACCCAAATGGTTTTGCACTAGTAAAGGACCATTGGGTTGTGGCCCCAGTGGCATTATGGCTGGTGATGCTATCATTACAGACAGTGGTGCCATGCATGTGGCAGGTGTGCCAATTGTTAATCCATCCACCATTGTTGTTTGGGAGGTTATGCCTGGGCCTGGTAATGGTTTCCAAGTAATTCCTAGAACAAGTACCAATAATGGTGTTCCACCTCCTCTTAGCTCACCCAACTGGACTGGTTTTGCACCTTTAGCTGCATATTTATTTAGTTGGCAAGATCATCTATTATCTGAAGAAAAACAAGGGAAAAACCAGACAAACCAAAACCTTGGTGATTCTATACCACTTAACTGTTCACCGGTTTCAAATTTTTCAGCATATGTGAGTCCTGAAACTGCAGCTCAAACTGCTGCAACCACTACATGGGGTTCTGGTGTAACAGCAGTAGCTTTTGATCCAACTTGTGGTGGTTCCGTGATAGCTGTTGTGATAGCTGAGGGACAGTACATGTCCCCATATGATCCAGATGAGGGCCCATCAATCACAGGGTGGAGAGTGCAACTCTGGGAATCATCTTTACAGCATGTTGTCCTTCATCCAATATTTGGGAATCCCACTTCCAGTATGGGTGGACAGCCTCCTATGCAAACTGTTTGGCAGACCAAAGTGGACCTGAGCATTCCACCAACAAATGATTTCAAGAATCATCAAGCTCCAGCAGTTGGAATGAACACTGACATTCAAAAGGTATCCGAGTTTGGTTTTGATAAGTCAAAAAGGGTCAATTTTGATCCTTTTGATCTTCCAAGTGATGTTAGGGCACTTGCACGAATTGTATACTCTCCTCATGGTGGTGAAATTGCCATTGCTTTTCTTCGGGGTGGAGTGCACATCTTTTCTGGTCCAAATTTTGCACCTGTAGACAACTATCAGATTAGTGTTGGATCTGCAATTGCTGCTCCTGCTTTTTCTTCAACAAGCTGCTGTTCAGCTTCTGTTTGGCATGACCCAAGCAAAGATCAGACAATTTTGAAAATAATCCGGGTTCTTCCTCCTGCTATTCCAACTAGTCAAGTAAAGACCAACTCATCAAACTGGGAGCGTGCAATTGCTGAAAGGTTTTGGTGGAGCCTTTTGGTTGGAGTTAATTGGTGGGATGCTGTGGGCTGTACACAGAGTGCTGCTGAGGATGGTATTGTTTCACTCAACAGTGTTATCGCAGTCTTGGATGCAGACTTCCATTCTCTTCCTTCTGCTCAGCACAGACAACAGTATTGTCCTAGTCTAGACAGGATAAAGTGTAGGCTGCTTGAAGGGGCAAATGCTCAAGAGGTCAGGGCAATGGTTCTGGATATGCAAGCTAGGTTGTTGTTGGATATGCTTGGGAAGGGAATTGAGTCTGCTTTGATAAATCCTTCAGCTTTAGTGCCCGATCCATGGCAAGTATCTAGTGAGACATTAACCAGCATTGACCCTGAAGCAGTGGCTGTTGAACCTGCACTAGTTCCATGTGTTCAGGCTTATGTTGATTCAGTTCTTGATCTAGCTTCACACTTTATCACCCGGTTGCGGCGTTATGCAAGTTTCTGCCGTACATTGGCAAGTCATGCTGTAACTGCAGGGACGGGAAATAACCGAAATGTGGTAGCTAGTCCTGCCCAATGTTCTGCAACTCCTGCAACAAGTCAGGGAGGTCAAAATGGGACAACCAGTTCTAGTGGAAGCACACAGATGCAAGCTTGGGTACAAGGGGCCATTGCCAAGATTAGTAGCACTACTGACGGAGTGTCCAACCCGGTTCCTAACCCCCCCATCAGTGGTCCTTCGTCCTTTATGCCCATAAGCATTAATACAGGAACTTTCCCTGGAACACCTGCAGTTCGACTTATTGGGGACTGTCATTTCCTCCATAGATTATGCCAACTGTTGCTCTTCTGTTTTTTCTTTCGACGAGCACAACAACCCCGCTATGCGGGAGGTGTACAGAGAACTGCTGACACAAATCTACAAAAACCTCAACCTAATGCTTCTGTCCCTGGCAAGGTGGAGGAAATTGCAAAACCAGTGTCAACTGTGGTTAGGCCAGATGATGGTCAGGCTGGTCGAGTTAGTCAACTTGTGCCTGCATCAAAAGGAGGTGAAGAACCATCTCCAGGGCGTTCAAGAATTGGTACTGGAAATGCTGGCCTAGGATATACATATGAAGAGGTCAAGGTTCTTTTTCTAGTACTTATGGATCTATGTCGCCGAACTGCTGGCTTGCAACACCCGTTGCCAGTTTCTCAGGTGGGGAGTAATAACATACAGGTTCGGCTGCATTATATTGATGGGAACTACACTGTACTGCCTGAGGTTGTGGAAGCAGCCCTTGGCCCCCATATGCAGAACATGCCCCGTCCTAGAGGTGCTGATGCTGCTGGTCTTCTACTACGTGAGCTAGAACTCCATCCTCCAGCTGAAGAGTGGCATAGACGGAATATGTTTGGTGGACCTTGGTCTGATCCAGATGATTTGGATTCTGCAAATGATGCACCAAAACTTATTAGTTTAAATCCACTTGATTCCAGCTCATTGGAAAATTGTGATGTCTACTATGGAGCCAATGGCTTATGGCCAAGGAAGCGCAGGATGTCTGAACGAGATGCAGCTTTTGGGTTGAACACTTCTGTGGGCCTGGGAGCATACCTTGGTATAATGGGATCTCGAAGAGATGTTGTTACTGCATTGTGGAAAACTGGCCTTGAAGGGATCTGGTACAAGTGTATAAGATGTCTGCGGCAGACTTGTGCTTTTGCCTCACCAGCTTCCACCAATCTTCCCAGTCAAAATGACCGGGAGATTTGGTGGATCAGCCGCTGGGCTTATGGATGTCCAATGTGTGGTGGAACATGGGTTCGAGTTGTATAG
>Glyma13g31480.1 sequence type=predicted peptide gene model=Glyma13g31480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNQIAAIKDPEEGSEKKKKSNEAISGEEKKEDPMEQEMESLTPATVFCIRLKQPKSNLLYKMSVPEICRNFSAVSWCGKLNAIACASETCARIPSSTGNPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTCCPRALLVANFHGRVTIWTQPSQGQANLALDASCWLREHEWRQDIAVVTKWLSGVSLYRWLSSKPSGPANSRSTFEEKFLSQQCQTSARWPNFLCVCSVLSSGSVQLHWSQWPPQNATPPKWFCTSKGPLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEVMPGPGNGFQVIPRTSTNNGVPPPLSSPNWTGFAPLAAYLFSWQDHLLSEEKQGKNQTNQNLGDSIPLNCSPVSNFSAYVSPETAAQTAATTTWGSGVTAVAFDPTCGGSVIAVVIAEGQYMSPYDPDEGPSITGWRVQLWESSLQHVVLHPIFGNPTSSMGGQPPMQTVWQTKVDLSIPPTNDFKNHQAPAVGMNTDIQKVSEFGFDKSKRVNFDPFDLPSDVRALARIVYSPHGGEIAIAFLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDPSKDQTILKIIRVLPPAIPTSQVKTNSSNWERAIAERFWWSLLVGVNWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSAQHRQQYCPSLDRIKCRLLEGANAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQVSSETLTSIDPEAVAVEPALVPCVQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGTGNNRNVVASPAQCSATPATSQGGQNGTTSSSGSTQMQAWVQGAIAKISSTTDGVSNPVPNPPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRYAGGVQRTADTNLQKPQPNASVPGKVEEIAKPVSTVVRPDDGQAGRVSQLVPASKGGEEPSPGRSRIGTGNAGLGYTYEEVKVLFLVLMDLCRRTAGLQHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPDDLDSANDAPKLISLNPLDSSSLENCDVYYGANGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTALWKTGLEGIWYKCIRCLRQTCAFASPASTNLPSQNDREIWWISRWAYGCPMCGGTWVRVV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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