Glyma13g31320 - SoyBase

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Report for Sequence Feature Glyma13g31320

Feature Type:	gene_model
Chromosome:	Gm13
Start:	33766133
stop:	33770006
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g31320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22620	AT	Annotation by Michelle Graham. TAIR10: phosphoglycerate/bisphosphoglycerate mutase family protein \| chr5:7517731-7520223 REVERSE LENGTH=460	SoyBase	E_val: 4.00E-57	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
KOG0235	KOG	Phosphoglycerate mutase	JGI		ISS
PTHR23029	Panther	PHOSPHOGLYCERATE MUTASE	JGI		ISS
PF00300	PFAM	Phosphoglycerate mutase family	JGI		ISS
UniRef100_B9RZ93	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphoglycerate mutase, putative n=1 Tax=Ricinus communis RepID=B9RZ93_RICCO	SoyBase	E_val: 8.00E-125	ISS
UniRef100_UPI000233AF5A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AF5A related cluster n=1 Tax=unknown RepID=UPI000233AF5A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g31320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g31320

Paralog	Evidence	Comments
Glyma15g08010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g31320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g239400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g31320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g31320

Limit To All Plant Sequences

>Glyma13g31320.2   sequence type=transcript   gene model=Glyma13g31320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGTTGAGCATAGATAAGTAGAGATTAGAGAGTGACGCTATTAGCTCGAGCAGGAAACAAGAACCACAACCTCAGCCTGTGTCAGTTGAGGGAAAATGGGCACTTGTGGGATTGTCTTGTTGACCAAACCTTCCCCTAAGCCATGGCCACTTCGGACATCCTCACGACGCACTCTTCCCCGCATTCGCTGCTGCTCTGCTTCTTCTACTTCAGAGCTTTCCCCAGATAAGCTTCCAACTAGTATTGATTTGTCTGTAACTGGTGGTGCCTATGATTTCTCAAAAGCAACAACATCACTAACAAATGAGTTAATCTCTTCACCAAAGAAAGTGACTCTTTTAAGGCACGGTCTTAGCACTTGGAATTCAGAAAGTAGGATTCAGGTTTGCATTCTACTTTATTATGGGGTTTGGGGGCTCGGTTTGTAAATGCAGGGATAGTTTTTCTCTCCGTTATGTTCTCATTCTGAAATGCCTTGTTGATCATTTGAACTTTACCGAGAGCTGTTCAAAAAATCGCATACCCTTGTTTCTTAGGACTGAACTCACTGAAGTTTTTGTTTGATATTTAGATGTTTCACATTCAACATCATTTACTGCATATGCCATCCACTGTCATTAAATTGATCATATGTGTTCAGGGAAGCTCAGATTTGTCTGTATTAACTGAAGTTGGGGAAGAGCAAGCAAAAAGGTGCAAAAAAGCCTTGGAAAATATATACTTTGACCAGTGTTTTGCAAGTCCAATATCTCGTGCCAAGCAAACGGCTGAAATTATATGGCAATGGAGGGAAAATCCATTGGTTTATCTTGATTCGCTTAAAGAGATATCTCTCTATCACCTTGAAGGCATGAAAAATGTGGATGCTATGCAAATATATCCCAAAGAGTATACAATCTGGAGAGAAGATCCAGCCAATTTTCTCATGAATGGTAGATATCCGGTACGAGATCTCTGGAAAGCTGCAAAAGATTGTTGGAAGGAGATGTTGTTGTCACCTGGAGAAAGCTTTCTGGTTGTGACTCACAAATCCATATTGAGGGCATTAACTTGCACTGCTTTAGGCCTGGGCCCAGAGAGGTTTCGTTCTATTGATATTAACAATGGTGGGATATGTGTGTTCAACTTCAATGTCAGAGGAGAAGCAATGCTTGAGGCTTTAAATATGACGGCTCATATGTACAGTGATCATGTCTATCCTGGCTAGTGCAAAGTTACATCGAGGAAGACAACAATTGTTGTTTTTATAGTTGATTGAAATATACCATGGAACAGCACCAGTGAAGATTTGATGTGGAATTTTCGTTTTAATTATATGAACTTCCGAATCTTTGGCAAGTGGGGGGGGGGTCCAACTATTTAGCAGGTTCGTCCAATGCTTTTATAGCAGGGGGATTTGACATAGCCCTCTCTCCCTTTGATATAGATATTTAGAAACGGAGAAATTAAAGTACTACTATAATTTATGCAAATTAGTTACGGGATTTGTACTGAGTTTGTTCAATCTTGTCATTTTTTAATAAATAAATATTGTTTGATGCCGTGTCGTGAGCAAACTCATCATTCTTTTTATGATAAATATATTGTTTAATGTTGTACTATAATTTATTTTACATGAAGATTTATGTATACTTGTATGAATATCTTGTTAGGGATCAAAATAAGTCTGCAAGCAACGTTTGTTTTGCAGTGCGGGTAATAATGAAGATTTATTG

Coding sequences of Glyma13g31320

Limit To All Plant Sequences

>Glyma13g31320.1   sequence type=CDS   gene model=Glyma13g31320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACTTGTGGGATTGTCTTGTTGACCAAACCTTCCCCTAAGCCATGGCCACTTCGGACATCCTCACGACGCACTCTTCCCCGCATTCGCTGCTGCTCTGCTTCTTCTACTTCAGAGCTTTCCCCAGATAAGCTTCCAACTAGTATTGATTTGTCTGTAACTGGTGGTGCCTATGATTTCTCAAAAGCAACAACATCACTAACAAATGAGTTAATCTCTTCACCAAAGAAAGTGACTCTTTTAAGGCACGGTCTTAGCACTTGGAATTCAGAAAGTAGGATTCAGGGAAGCTCAGATTTGTCTGTATTAACTGAAGTTGGGGAAGAGCAAGCAAAAAGGTGCAAAAAAGCCTTGGAAAATATATACTTTGACCAGTGTTTTGCAAGTCCAATATCTCGTGCCAAGCAAACGGCTGAAATTATATGGCAATGGAGGGAAAATCCATTGGTTTATCTTGATTCGCTTAAAGAGATATCTCTCTATCACCTTGAAGGCATGAAAAATGTGGATGCTATGCAAATATATCCCAAAGAGTATACAATCTGGAGAGAAGATCCAGCCAATTTTCTCATGAATGGTAGATATCCGGTACGAGATCTCTGGAAAGCTGCAAAAGATTGTTGGAAGGAGATGTTGTTGTCACCTGGAGAAAGCTTTCTGGTTGTGACTCACAAATCCATATTGAGGGCATTAACTTGCACTGCTTTAGGCCTGGGCCCAGAGAGGTTTCGTTCTATTGATATTAACAATGGTGGGATATGTGTGTTCAACTTCAATGTCAGAGGAGAAGCAATGCTTGAGGCTTTAAATATGACGGCTCATATGTACAGTGATCATGTCTATCCTGGCTAG

>Glyma13g31320.2   sequence type=CDS   gene model=Glyma13g31320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCACATTCAACATCATTTACTGCATATGCCATCCACTGTCATTAAATTGATCATATGTGTTCAGGGAAGCTCAGATTTGTCTGTATTAACTGAAGTTGGGGAAGAGCAAGCAAAAAGGTGCAAAAAAGCCTTGGAAAATATATACTTTGACCAGTGTTTTGCAAGTCCAATATCTCGTGCCAAGCAAACGGCTGAAATTATATGGCAATGGAGGGAAAATCCATTGGTTTATCTTGATTCGCTTAAAGAGATATCTCTCTATCACCTTGAAGGCATGAAAAATGTGGATGCTATGCAAATATATCCCAAAGAGTATACAATCTGGAGAGAAGATCCAGCCAATTTTCTCATGAATGGTAGATATCCGGTACGAGATCTCTGGAAAGCTGCAAAAGATTGTTGGAAGGAGATGTTGTTGTCACCTGGAGAAAGCTTTCTGGTTGTGACTCACAAATCCATATTGAGGGCATTAACTTGCACTGCTTTAGGCCTGGGCCCAGAGAGGTTTCGTTCTATTGATATTAACAATGGTGGGATATGTGTGTTCAACTTCAATGTCAGAGGAGAAGCAATGCTTGAGGCTTTAAATATGACGGCTCATATGTACAGTGATCATGTCTATCCTGGCTAG

Predicted protein sequences of Glyma13g31320

Limit To All Plant Sequences

>Glyma13g31320.1   sequence type=predicted peptide   gene model=Glyma13g31320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTCGIVLLTKPSPKPWPLRTSSRRTLPRIRCCSASSTSELSPDKLPTSIDLSVTGGAYDFSKATTSLTNELISSPKKVTLLRHGLSTWNSESRIQGSSDLSVLTEVGEEQAKRCKKALENIYFDQCFASPISRAKQTAEIIWQWRENPLVYLDSLKEISLYHLEGMKNVDAMQIYPKEYTIWREDPANFLMNGRYPVRDLWKAAKDCWKEMLLSPGESFLVVTHKSILRALTCTALGLGPERFRSIDINNGGICVFNFNVRGEAMLEALNMTAHMYSDHVYPG*

>Glyma13g31320.2   sequence type=predicted peptide   gene model=Glyma13g31320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFHIQHHLLHMPSTVIKLIICVQGSSDLSVLTEVGEEQAKRCKKALENIYFDQCFASPISRAKQTAEIIWQWRENPLVYLDSLKEISLYHLEGMKNVDAMQIYPKEYTIWREDPANFLMNGRYPVRDLWKAAKDCWKEMLLSPGESFLVVTHKSILRALTCTALGLGPERFRSIDINNGGICVFNFNVRGEAMLEALNMTAHMYSDHVYPG*

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