Report for Sequence Feature Glyma13g31300
Feature Type: gene_model
Chromosome: Gm13
Start: 33753533
stop: 33756276
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g31300
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G21700 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF2921) | chr4:11529956-11532844 FORWARD LENGTH=962
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
PF11145 PFAM
Protein of unknown function (DUF2921)
JGI ISS
UniRef100_I1M242 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M242_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g31300
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g31300
Paralog Evidence Comments
Glyma15g08030 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g31300 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g239200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g31300
Coding sequences of Glyma13g31300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g31300.2 sequence type=CDS gene model=Glyma13g31300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAACTCCATCATCGAACCCTCTCTTCATCTTCTTCCTTTTCTATTCCTCTGTATCACTTAATCCTTCAGATTTGACTTTCGAATCGACCTACGCTCGCCTCTGCAACCACCATGTCCCTGCACCGCCCTCTCGTTCCGCCGAAGGAACCTTCCCCGGCGTCGCCGACGAGCTCCGGTTCCAATTTGGCTACTTTGCCGGCGGCCACCGATTCTTCAACCGATCCGTCTCGATGAAGAACCGCGCGTCTGGATTTTGGTCGCGCTCTTCTGGTAACCTATGTATGTTCGGAATAGGATCGTCTCATGTTAACATGCAAAACGCTAATGTTGTTCTTAAGCTTCGTTACCCTAGAGATTTAAGCCTTTTGGATTGTTTGATAAGTGGAACACTAGAAAGTTTTGATGACAAGAATAATTTGCAATATTTTGAACCTATTTCGATATTGGCTTTGTCTCAGTTCGAATTACAGTTTGAATTGGAATATGGGAGTCACTGTGGTAATGGTAGTTGCAATCCTGTTGGTGGTAGTGGTGGAGAATTGCCTGATTTAATGCTGCTTCATGCCACTCAATGTGCGGAGAGGCAGAAGGTTCAGATGCTATTGGGTTTTCCCGAATCCAGCTACCAGGATGCTGTGTTTCCGTTTCATCCAAATACGACATTGGTTTCTGAGGGGATGTGGGATGAGAAGGAGAATCAACTATGTGCGGTTGCATGCTGGATCTTGAACTTCACTGAATCTTCGGTTAATCCTTATGTTGGAGATTGCAAGATTAGGCTCAGTTTCAGGTTTCCTGCAGTTTTATCTTTGAGGAACAGGAGTACGGTTTTGGGGCAGATTTGGAGTGACAAAGTGGTTGGTGAATCTGGGTACTTTAGGAAGGTTGGATTTCAGGGTTCATCAAGGGTATCAAAAAGCCTCCAAGGTTTCCAATACAAGTATGCTGATACTGAGAGGGTGAGAAAATCTTGGAAATACTATCCGGATGGATATTCTTCTGATATGGCATTTAGCATGTTAGTGACAAACAGCAGAAGGCAAGTAGCTCCAGGACACTCATCGCCACTATTTGTCGGTGATCAAATTCATAGTGGACAGTCATATGGGGTTCCATTTGTGTTGACAACAGGAAATCCGAAAGCACGTGGTATTCAAACAGATAATTTGTTGAATGTCAGCTATACAATAAGCTTTAATTCCCCTGCTGATTTCAAGTTTGGCAGAGGAGTCTCATCAACCAAAGTCAAAATTGGGGCTGAAGGAATTTACAATAGGAATACTGGAGTTTTGTGTATGATAGGATGTCAGCATTTGAGGTCAACAGACAAAATACTGATAAAGAATGAGACTCTGGACTGTGAATTCATGGTTAATGTTCAGTTTCCTCCATTGAATGCAAAAGGAGGTGAATCTCTTACAGGAACTATAGAAAGCACACGACAAATGTCAGACCCTTATTATTTTGATCCCCTTCAGTTGTCTTCCATTTGGAGAATGGATTTTGAGTTAATTATGGTATTGGTATCAAACACACTTGTTTGTGTGTTTGTAGGATTGCAACTTCTCCATGAGAAAAAGCACCCGGATGTCCTTCCTTACATTTCTGTTGTGATGCTCACTGTTATTACTCTAGGACACATGATTCCCCTGATATTGAACTTTGAAGCTTTATTCATGGGGAACGACAGCGTGCAGAATACTTTTCTTGGTAGTGGAGGCTGGCTTGAAGTGAATGAGGTAGTCCTGAGGATGGTGACAATGGTAGCCTTTCTTCTTGAGTTGTGCCTTGTACAATTGATCTGGTCCTCAAGACAGGGTGAGGGAAGCCATCCTGGTCTGTGGGGTTCTGAAAAAAAAGTTCTTTATATCACTTTACCATTGTACATTGGTGGTGGACTGACTGCTTGGTTGGTGCACATATGGAAGACTTCTCACCAAAAAAGATTTAGACCATTCCAACTTTCACGCCACAAGTTTAGGCTTCCTCGAGAACATTTTTACCGACCTCCTTCCCTCTGGGAAGACTTTAAATGTTATGCCGGTTGGCTCCTGGATGGTTTTCTGCTCCCACAGATTCTGCTTAACATAATATTTAACTCAGATGGGAAACCTCTAGCATCTTCCTTTTATGTTGGGACAACCATTGTTCGTATACTGCCCCATGCATACGATCTTTATAGAGCCCACAGTTCGGCATGGTACCTTGATTTATCATATATATATGCAAACCATAGAATGGATTTTTATTCCACAGCCTGGGACATCATAATCCCTAGTGGTGGTATTTTGTTTGCTCTCCTTGTATACTTTCAGCAGAGATTTGGTAGTCGGTGCATTCTTCCAAAGAGGTTCAGAGAAAGTACTGCTTATGAGAAA
Predicted protein sequences of Glyma13g31300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g31300.2 sequence type=predicted peptide gene model=Glyma13g31300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGTPSSNPLFIFFLFYSSVSLNPSDLTFESTYARLCNHHVPAPPSRSAEGTFPGVADELRFQFGYFAGGHRFFNRSVSMKNRASGFWSRSSGNLCMFGIGSSHVNMQNANVVLKLRYPRDLSLLDCLISGTLESFDDKNNLQYFEPISILALSQFELQFELEYGSHCGNGSCNPVGGSGGELPDLMLLHATQCAERQKVQMLLGFPESSYQDAVFPFHPNTTLVSEGMWDEKENQLCAVACWILNFTESSVNPYVGDCKIRLSFRFPAVLSLRNRSTVLGQIWSDKVVGESGYFRKVGFQGSSRVSKSLQGFQYKYADTERVRKSWKYYPDGYSSDMAFSMLVTNSRRQVAPGHSSPLFVGDQIHSGQSYGVPFVLTTGNPKARGIQTDNLLNVSYTISFNSPADFKFGRGVSSTKVKIGAEGIYNRNTGVLCMIGCQHLRSTDKILIKNETLDCEFMVNVQFPPLNAKGGESLTGTIESTRQMSDPYYFDPLQLSSIWRMDFELIMVLVSNTLVCVFVGLQLLHEKKHPDVLPYISVVMLTVITLGHMIPLILNFEALFMGNDSVQNTFLGSGGWLEVNEVVLRMVTMVAFLLELCLVQLIWSSRQGEGSHPGLWGSEKKVLYITLPLYIGGGLTAWLVHIWKTSHQKRFRPFQLSRHKFRLPREHFYRPPSLWEDFKCYAGWLLDGFLLPQILLNIIFNSDGKPLASSFYVGTTIVRILPHAYDLYRAHSSAWYLDLSYIYANHRMDFYSTAWDIIIPSGGILFALLVYFQQRFGSRCILPKRFRESTAYEK
SoyBase
SoyBase transitions to NEW site on 10/1/2024
