Glyma13g31270 - SoyBase

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Report for Sequence Feature Glyma13g31270

Feature Type:	gene_model
Chromosome:	Gm13
Start:	33712492
stop:	33714803
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g31270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G53035	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15358.1); Has 49 Blast hits to 49 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:19761866-19762318 REVERSE LENGTH=150	SoyBase	E_val: 3.00E-61	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1M236	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M236_SOYBN	SoyBase	E_val: 2.00E-150	ISS

Expression Patterns of Glyma13g31270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g31270

Paralog	Evidence	Comments
Glyma15g08080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g31270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g238900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g31270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g31270

Limit To All Plant Sequences

>Glyma13g31270.2   sequence type=transcript   gene model=Glyma13g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATAAGGGTAACTTAGATATTTTCTTCCATGTAGGCTATTTTCGTCCAATAAATATATAGTTTTAGTTAAAAAGAAAGAAGAAAATTTAGGATGGGTGGGTGCATCCAGAAGCAAAGCAAAGGCATGATGAGGTTATTAGGGTTTTAGAGATGATGAAATGAGAAGTCGAATGGCATCATCGTCATCGGCATTTCTGGTGATCTGCATCCTGCACTCGTTAATAGCAGTGACATGTGGGGGGCTGATGATGTTCTACATGAAGGAGGTCTACACCTTCGGCCACGGAGTGCAGGCCGCCACCAAGCTCTTGGGATCCACGCCGCACGACCAGCTTCTCATCAAGACCTCCGATTCCTTCTCCGGCTTGCTCCTTGTCGCAATTGGGTTCCTCCTCTTCATGGTCTCTTTTGTTAAAGATCGTGACTTTCAGGTCTTCTTCGCCAAGGGTTGCACGCTCCTCCACCTCTTCATGGCGATGTGGAGGGTCTACTTTGAACGCAAGGTTGAGGATCTCGCTTGGGATTGGCTCCGCCAGACTGTTGGCGATTTTCTCTTGGCCCTTTCGTGGGTTTTCTTCCTTGTTTACTCTTGGAGGGAGAAGTATGATTAGCTTCCCTCTTTCTTTTTTATTTTTTTATTTACGTTTCCAGCTTTGGATTTACCTTGTAAAAATCGGATCTCACCTGGCTTTCTTTCTTATCAAATCTGTGGTTAGAGATACGTTATAAACTTGTCAATTTTGCCTTCCCTGCTTCAATTACAGAAAATGGTCAATAATCTTACCAGATTATGCCTGATGTTCAGCAGAGTGACATTGAGTGCTGTAGCCAGTGTGTCGAGTTTGAGGATTGTTATAAACTGGGAAAATGATCCGAAGGTGTGCGACTGTGCATGTTAGTGAAGTTGTTGTGTTTGTAGGTTGGGGTGAACAACAGTGGGATGTTTTATTGGTTTGTTAAGATTAAAGAGTTTGGGATCACAGAAATCAGAAACTAATGGTGCATCTGTCAAATCAGTGTATTGTTTTCATTTAATTTTGAGGATCCTCTTTTCATATCAATGCTTAGAATTTACAAACTCTGCGGACTTAGCTGATGCAGCAATTGTAAAGAGCAGTTGACGCGTATATCTGAATGAAGCCATTTGAGTATGTATGTTGAGAAATTTCATTCGGATTGATGAAGTGTTTTGCTGGTACCGCTGATGAAACCAAGTCCGAAGACAGCATAGAGTAGAGTGACAATTATTGCATAGATTTGTGTCTCTGATAATTGTCACCATGCTCCTTTATGCTTAAGTTCATGGTAGTACTGCTTGATTAATTGAGTGACCTTCGATTATGACACATCCTAAGTGAATTGTTTTTAACCTAATATGAATGTTATTGTTCTCTCACTCATCCCAACTCTCTCAACCTGAGTCCTTTTAATTTGTTGTCTTTCAATCTGTCAAGCTCTTCTTTGCTTTCTCTCAAATCCCAAAACCCTAAAACTTTGTTGCAAGGAGTGCCTCTCATTCTTTGTTCTTGAGTATTATGGTATCAATTTTTAATTCTCTCTGTTTTGCTGTTCCGGTTTTGCTCTCCTCTTTGACTTCTCTGCTATTTACTCTCTACTTTGACTTTTATATTCCTCTGTTTTGCTTCTGTGAAAATGTCAAGATAATCATCAAGTGGGTTTATTTAACATTGCTGTCATATGCTAGAAAGGCTATTGAGTATAACCTGGATCTTTCATCTGACCATGGCTATTGGTTAGATTGTTGATATGATGGAAGTTCATATAACATTAAATATTTAAATATAAACTTGGATTTGGGCACTCTGAATAGAAGACAACTTGATTCAAGTTGTAGAGGATGCTATTGGTTTTGTTGGTTTGCTCGTCTAGATGATGTGGGGTTCCTAATTTTGATATGAATTTGATGTAGTTGGAGAAGAAGATGCAATCCAGATGGAGATGATGAGAGAGTTGGGCTGCTTTCTTTTGGCGTTTTAGTTTTATGTGCTGTCAAAATCCAACATCTTTTATATTTGAAGTTGTTAATTTGCAACTTTACCTTAATTTGTGATTGTGACTTGAATATTGTAAACGATCACCTTATGCATTTTTCAAGGTAACTTTTCACATCTGCTTTTTTTTTTTTTATATGCATATATGTGTTTGGATGTAAATTTGTATTTTAGGTGGGATCTCACATG

>Glyma13g31270.3   sequence type=transcript   gene model=Glyma13g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGATGGGTGGGTGCATCCAGAAGCAAAGCAAAGGCATGATGAGGTTATTAGGGTTTTAGAGATGATGAAATGAGAAGTCGAATGGCATCATCGTCATCGGCATTTCTGGTGATCTGCATCCTGCACTCGTTAATAGCAGTGACATGTGGGGGGCTGATGATGTTCTACATGAAGGAGGTCTACACCTTCGGCCACGGAGTGCAGGCCGCCACCAAGCTCTTGGGATCCACGCCGCACGACCAGCTTCTCATCAAGACCTCCGATTCCTTCTCCGGCTTGCTCCTTGTCGCAATTGGGTTCCTCCTCTTCATGGTCTCTTTTGTTAAAGATCGTGACTTTCAGGTCTTCTTCGCCAAGGGTTGCACGCTCCTCCACCTCTTCATGGCGATGTGGAGGGTCTACTTTGAACGCAAGGTTGAGGATCTCGCTTGGGATTGGCTCCGCCAGACTGTTGGCGATTTTCTCTTGGCCCTTTCGTGGGTTTTCTTCCTTGTTTACTCTTGGAGGGAGAAAGATACGTTATAAACTTGTCAATTTTGCCTTCCCTGCTTCAATTACAGAAAATGGTCAATAATCTTACCAGATTATGCCTGATGTTCAGCAGAGTGACATTGAGTGCTGTAGCCAGTGTGTCGAGTTTGAGGATTGTTATAAACTGGGAAAATGATCCGAAGGTGTGCGACTGTGCATGTTAGTGAAGTTGTTGTGTTTGTAGGTTGGGGTGAACAACAGTGGGATGTTTTATTGGTTTGTTAAGATTAAAGAGTTTGGGATCACAGAAATCAGAAACTAATGGTGCATCTGTCAAATCAGTGTATTGTTTTCATTTAATTTTGAGGATCCTCTTTTCATATCAATGCTTAGAATTTACAAACTCTGCGGACTTAGCTGATGCAGCAATTGTAAAGAGCAGTTGACGCGTATATCTGAATGAAGC

>Glyma13g31270.4   sequence type=transcript   gene model=Glyma13g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGATGGGTGGGTGCATCCAGAAGCAAAGCAAAGGCATGATGAGGTTATTAGGGTTTTAGAGATGATGAAATGAGAAGTCGAATGGCATCATCGTCATCGGCATTTCTGGTGATCTGCATCCTGCACTCGTTAATAGCAGTGACATGTGGGGGGCTGATGATGTTCTACATGAAGGAGGTCTACACCTTCGGCCACGGAGTGCAGGCCGCCACCAAGCTCTTGGGATCCACGCCGCACGACCAGCTTCTCATCAAGACCTCCGATTCCTTCTCCGGCTTGCTCCTTGTCGCAATTGGGTTCCTCCTCTTCATGGTCTCTTTTGTTAAAGATCGTGACTTTCAGGTCTTCTTCGCCAAGGGTTGCACGCTCCTCCACCTCTTCATGGCGATGTGGAGGGTCTACTTTGAACGCAAGGTTGAGGATCTCGCTTGGGATTGGCTCCGCCAGACTGTTGGCGATTTTCTCTTGGCCCTTTCGTGGGTTTTCTTCCTTGTTTACTCTTGGAGGGAGAACTGATGTTCAGCAGAGTGACATTGAGTGCTGTAGCCAGTGTGTCGAGTTTGAG

Coding sequences of Glyma13g31270

Limit To All Plant Sequences

>Glyma13g31270.1   sequence type=CDS   gene model=Glyma13g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAGTCGAATGGCATCATCGTCATCGGCATTTCTGGTGATCTGCATCCTGCACTCGTTAATAGCAGTGACATGTGGGGGGCTGATGATGTTCTACATGAAGGAGGTCTACACCTTCGGCCACGGAGTGCAGGCCGCCACCAAGCTCTTGGGATCCACGCCGCACGACCAGCTTCTCATCAAGACCTCCGATTCCTTCTCCGGCTTGCTCCTTGTCGCAATTGGGTTCCTCCTCTTCATGGTCTCTTTTGTTAAAGATCGTGACTTTCAGGTCTTCTTCGCCAAGGGTTGCACGCTCCTCCACCTCTTCATGGCGATGTGGAGGGTCTACTTTGAACGCAAGGTTGAGGATCTCGCTTGGGATTGGCTCCGCCAGACTGTTGGCGATTTTCTCTTGGCCCTTTCGTGGGTTTTCTTCCTTGTTTACTCTTGGAGGGAGAATTGGAGAAGAAGATGCAATCCAGATGGAGATGATGAGAGAGTTGGGCTGCTTTCTTTTGGCGTTTTAGTTTTATGTGCTGTCAAAATCCAACATCTTTTATATTTGAAGTTGTTAATTTGCAACTTTACCTTAATTTGTGATTGTGACTTGAATATTGTAAACGATCACCTTATGCATTTTTCAAGGTAA

>Glyma13g31270.2   sequence type=CDS   gene model=Glyma13g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAGTCGAATGGCATCATCGTCATCGGCATTTCTGGTGATCTGCATCCTGCACTCGTTAATAGCAGTGACATGTGGGGGGCTGATGATGTTCTACATGAAGGAGGTCTACACCTTCGGCCACGGAGTGCAGGCCGCCACCAAGCTCTTGGGATCCACGCCGCACGACCAGCTTCTCATCAAGACCTCCGATTCCTTCTCCGGCTTGCTCCTTGTCGCAATTGGGTTCCTCCTCTTCATGGTCTCTTTTGTTAAAGATCGTGACTTTCAGGTCTTCTTCGCCAAGGGTTGCACGCTCCTCCACCTCTTCATGGCGATGTGGAGGGTCTACTTTGAACGCAAGGTTGAGGATCTCGCTTGGGATTGGCTCCGCCAGACTGTTGGCGATTTTCTCTTGGCCCTTTCGTGGGTTTTCTTCCTTGTTTACTCTTGGAGGGAGAAGTATGATTAG

>Glyma13g31270.3   sequence type=CDS   gene model=Glyma13g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAGTCGAATGGCATCATCGTCATCGGCATTTCTGGTGATCTGCATCCTGCACTCGTTAATAGCAGTGACATGTGGGGGGCTGATGATGTTCTACATGAAGGAGGTCTACACCTTCGGCCACGGAGTGCAGGCCGCCACCAAGCTCTTGGGATCCACGCCGCACGACCAGCTTCTCATCAAGACCTCCGATTCCTTCTCCGGCTTGCTCCTTGTCGCAATTGGGTTCCTCCTCTTCATGGTCTCTTTTGTTAAAGATCGTGACTTTCAGGTCTTCTTCGCCAAGGGTTGCACGCTCCTCCACCTCTTCATGGCGATGTGGAGGGTCTACTTTGAACGCAAGGTTGAGGATCTCGCTTGGGATTGGCTCCGCCAGACTGTTGGCGATTTTCTCTTGGCCCTTTCGTGGGTTTTCTTCCTTGTTTACTCTTGGAGGGAGAAAGATACGTTATAA

>Glyma13g31270.4   sequence type=CDS   gene model=Glyma13g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAGTCGAATGGCATCATCGTCATCGGCATTTCTGGTGATCTGCATCCTGCACTCGTTAATAGCAGTGACATGTGGGGGGCTGATGATGTTCTACATGAAGGAGGTCTACACCTTCGGCCACGGAGTGCAGGCCGCCACCAAGCTCTTGGGATCCACGCCGCACGACCAGCTTCTCATCAAGACCTCCGATTCCTTCTCCGGCTTGCTCCTTGTCGCAATTGGGTTCCTCCTCTTCATGGTCTCTTTTGTTAAAGATCGTGACTTTCAGGTCTTCTTCGCCAAGGGTTGCACGCTCCTCCACCTCTTCATGGCGATGTGGAGGGTCTACTTTGAACGCAAGGTTGAGGATCTCGCTTGGGATTGGCTCCGCCAGACTGTTGGCGATTTTCTCTTGGCCCTTTCGTGGGTTTTCTTCCTTGTTTACTCTTGGAGGGAGAACTGA

Predicted protein sequences of Glyma13g31270

Limit To All Plant Sequences

>Glyma13g31270.1   sequence type=predicted peptide   gene model=Glyma13g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSRMASSSSAFLVICILHSLIAVTCGGLMMFYMKEVYTFGHGVQAATKLLGSTPHDQLLIKTSDSFSGLLLVAIGFLLFMVSFVKDRDFQVFFAKGCTLLHLFMAMWRVYFERKVEDLAWDWLRQTVGDFLLALSWVFFLVYSWRENWRRRCNPDGDDERVGLLSFGVLVLCAVKIQHLLYLKLLICNFTLICDCDLNIVNDHLMHFSR*

>Glyma13g31270.2   sequence type=predicted peptide   gene model=Glyma13g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSRMASSSSAFLVICILHSLIAVTCGGLMMFYMKEVYTFGHGVQAATKLLGSTPHDQLLIKTSDSFSGLLLVAIGFLLFMVSFVKDRDFQVFFAKGCTLLHLFMAMWRVYFERKVEDLAWDWLRQTVGDFLLALSWVFFLVYSWREKYD*

>Glyma13g31270.3   sequence type=predicted peptide   gene model=Glyma13g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSRMASSSSAFLVICILHSLIAVTCGGLMMFYMKEVYTFGHGVQAATKLLGSTPHDQLLIKTSDSFSGLLLVAIGFLLFMVSFVKDRDFQVFFAKGCTLLHLFMAMWRVYFERKVEDLAWDWLRQTVGDFLLALSWVFFLVYSWREKDTL*

>Glyma13g31270.4   sequence type=predicted peptide   gene model=Glyma13g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSRMASSSSAFLVICILHSLIAVTCGGLMMFYMKEVYTFGHGVQAATKLLGSTPHDQLLIKTSDSFSGLLLVAIGFLLFMVSFVKDRDFQVFFAKGCTLLHLFMAMWRVYFERKVEDLAWDWLRQTVGDFLLALSWVFFLVYSWREN*

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