Report for Sequence Feature Glyma13g31240
Feature Type: gene_model
Chromosome: Gm13
Start: 33683952
stop: 33687009
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g31240
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G26250 AT
Annotation by Michelle Graham. TAIR10: 3-ketoacyl-CoA synthase 10 | chr2:11170799-11173059 REVERSE LENGTH=550
SoyBase E_val: 0 ISS
GO:0000038 GO-bp
Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid metabolic process
SoyBase N/A ISS
GO:0006633 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0008610 GO-bp
Annotation by Michelle Graham. GO Biological Process: lipid biosynthetic process
SoyBase N/A ISS
GO:0009409 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cold
SoyBase N/A ISS
GO:0009416 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to light stimulus
SoyBase N/A ISS
GO:0009913 GO-bp
Annotation by Michelle Graham. GO Biological Process: epidermal cell differentiation
SoyBase N/A ISS
GO:0042335 GO-bp
Annotation by Michelle Graham. GO Biological Process: cuticle development
SoyBase N/A ISS
GO:0080167 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to karrikin
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0016746 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups
SoyBase N/A ISS
GO:0016747 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups
SoyBase N/A ISS
PF08392 PFAM
FAE1/Type III polyketide synthase-like protein
JGI ISS
PF08541 PFAM
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
JGI ISS
UniRef100_I1MEJ6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: 3-ketoacyl-CoA synthase n=1 Tax=Glycine max RepID=I1MEJ6_SOYBN
SoyBase E_val: 0 ISS
UniRef100_UPI000233B372 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B372 related cluster n=1 Tax=unknown RepID=UPI000233B372
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g31240
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g31240
Paralog Evidence Comments
Glyma15g08110 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g31240 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g238600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g31240
Coding sequences of Glyma13g31240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g31240.2 sequence type=CDS gene model=Glyma13g31240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCAAAAGACAGGGAGGAGTTTTCCACCGAGATTGTGCAGAGAGGTGTTGAGAACTCTGGCCCAAATGCTGGCTTTCTTTCTTTCTCTGTGAAAGTGAAGCCTAGACTGCCAGATTTCCTTAGTTCAGTTAATCTAAAATATGTGAAATTGGGTTATGGCTACCTCATTAGCCATCGCTTGTACTTGTTGCTGGCACCACCTCTCCTTGCAGCCTTCATTGCTCGTATTGGAAAGTTCACTTGGCAAGACCTCTATGAGAAATATGGTTTCATTGAGATTCTATTTATATCAGGACTTTTGGGCCTAATGCTATATTTTTATATTGACTTAACACCCGGCTCTACCTATTTGCTTGATTTCTCATGTTTTCGCCCTTCAGATGAATGCAAGATCTCTAAGGCAGAGTTCATTGAGTTAGCCAAAAAATCTGGGAATTTCAATGATACTGCCATTGAGTTTCAAGAACGAGTTCTTAAGAAATCTGGCATTGGCGATGAGACCTACCTGCCAAAAAGAGTTTTTCACCCTGGTTACAGAAACTCACTGAATGATGGCAGACAAGAGGTATCCATGGTGATGTTTGGGGCAATTAAGGACCTTCTTGCTGCCACAAAAGTGAAACCAAAAGATATCAGAATCCTGATAGTAAACTGTGGAATACTAAACACCACCCCATCACTCTCATCAATGATAGTAAACCATTTCAAGCTTAGGCATGACATCCATAGCTTCAACCTTGGTGGGATGGGTTGTGCTGCTGGAATTACAGCTATTGATCTTGCTAAAGACCTTCTGGATGCTTATCCAAGAACTTATGCACTTGTAGTTAGCACAGAAGCTGTAAGCTCAACATGGTACAGTGGCAATGATATTGGCATGCTGCTTCCCAATTGCTTCTTCAGAATGGGAGCTGCAGCCATCATGCTCTCAAACTTTCACCTAGATAGATGGTGCGCCAAGTATGAACTCAAACAGCTGGTCCGAACTCACAAAGGGATGAACAACAGAAGCTACAAAAGCATACATCAAAGGGAAGATAGTGAAGGGAGGAAGGGCATTTCTGTGAGTAAAGATGTAATTGAAGTTGGAGGCCATGCACTAAAGGCCAACATCACCACACTAGGTCCACTAGTGCTACCCGTTTCAGAGCAGCTTCACTTCTTCACCAACTTGATCTTCAAGAAAAGGAAAACAAAGCCATACATTCCTGATTACAAGCTGGCGTTCGAGCACATGTGCATTCTGGCAACGAGCAAGAAAGTGCTGGATGAGATTCAGAAGAACTTGGAGCTCACAGAGGAATACATGGAAGCATCAAGGAAGACATTGGAGCGATTTGGCAACACATCAAGCAGCAGCATTTGGTATGAACTGGCTTATCTTGAGTTGAACTCAAGGATCAAAAGGGGTGATCGGGTTTGCCAAATAGCTCTTGGGGCAGGGTTCATGTGTAACAGTGTTGTGTGGAAGGCTCTTAGGAATGTTGGGAGACCCAAGCAGAGTCCTTGGATTGAGGATGATAGCTGA
Predicted protein sequences of Glyma13g31240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g31240.2 sequence type=predicted peptide gene model=Glyma13g31240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSKDREEFSTEIVQRGVENSGPNAGFLSFSVKVKPRLPDFLSSVNLKYVKLGYGYLISHRLYLLLAPPLLAAFIARIGKFTWQDLYEKYGFIEILFISGLLGLMLYFYIDLTPGSTYLLDFSCFRPSDECKISKAEFIELAKKSGNFNDTAIEFQERVLKKSGIGDETYLPKRVFHPGYRNSLNDGRQEVSMVMFGAIKDLLAATKVKPKDIRILIVNCGILNTTPSLSSMIVNHFKLRHDIHSFNLGGMGCAAGITAIDLAKDLLDAYPRTYALVVSTEAVSSTWYSGNDIGMLLPNCFFRMGAAAIMLSNFHLDRWCAKYELKQLVRTHKGMNNRSYKSIHQREDSEGRKGISVSKDVIEVGGHALKANITTLGPLVLPVSEQLHFFTNLIFKKRKTKPYIPDYKLAFEHMCILATSKKVLDEIQKNLELTEEYMEASRKTLERFGNTSSSSIWYELAYLELNSRIKRGDRVCQIALGAGFMCNSVVWKALRNVGRPKQSPWIEDDS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
