Glyma13g31200 - SoyBase

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Report for Sequence Feature Glyma13g31200

Feature Type:	gene_model
Chromosome:	Gm13
Start:	33634149
stop:	33637493
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g31200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20980	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) \| chr4:11216997-11218772 FORWARD LENGTH=591	SoyBase	E_val: 0	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
KOG2479	KOG	Translation initiation factor 3, subunit d (eIF-3d)	JGI		ISS
PTHR12399	Panther	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7	JGI		ISS
PF05091	PFAM	Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)	JGI		ISS
UniRef100_B9RBD0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 3 subunit, putative n=1 Tax=Ricinus communis RepID=B9RBD0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1M228	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M228_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g31200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g31200

Paralog	Evidence	Comments
Glyma15g08150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g31200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g238200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g31200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g31200

Limit To All Plant Sequences

>Glyma13g31200.2   sequence type=transcript   gene model=Glyma13g31200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCCACACATGGTTTGCGTAAATAAGAGGCATCGCAAGGGCAAACACATGACAAAAAAGAGAGTATAAAACATTATTTTCGAATTAGGGTTTCTGACTGATCTCCCTCTCTCTGCTCTCTGAGCACACCTCCACTCTGTTCCTCAGATTCATCACCACCTTGCGTTGCGCCAATGGGAAAAGCATTCGACATCGGAGCCGTTCCGTTCAACGCCGAGGGGTGGGGTCCGCCGGACAGCACCATCACCGGCAGCAACATCAACCTCCCTCTGAACGTCCCCTTCGCCCCCTTCTCCCGCTCCGACAAATTGGGCCGCATCGCCGACTGGACCCGCAACTTCAACAACCCGACCCGCTCCAAGAACCCCGCTGACGCCGTCTTTGACTTCACGAACGACGACGACGACGACACCTTCCACCTCGTCGACCCCAAGCCCCCGCCGCGCCCCAAATTTGGTCCCAAGTGGCGCTTCCCGCAGCAGCGCCAGCTCCCTCAGCGCCGCGACGAAGAAGTCGAGGCGAAGAAGCGCGAGCAGGAGAAGGAACGCGCCCGCCGAGATCGTCTCTACCACATGAACCGCTCAAACCCTAATCAGCAGCGCCGTGAAGCCGCTGTTTTCAAATCCTCCGTCGATATCCAACCCGAATGGAACATGCACGACCAGATCCCCTTCAGCACCTTCTCCAAGCTCTCCTTCACCGTTCCCGAACCCGAAGACCTTCTCCTCTGCGGCGCTCTGGAATACTACGACCGCACTTACGATCGCATCACGCCCAAAAACGAACGCCGCCTCGAACGCTTCAAGAATCGAAACTTCTTCAAAGTCACCACCACCGACGACCCCATCATTCGCAGACTCGCCAACGAGGACAAGGCCACCGTTTTCGCCACCGACACGATTCTGTCCACTCTCATGTGTGCCCCTCGTTCTGTTTATTCCTGGGACATTGTCGTCCAGCGTGTCGGAAACAAGCTTTTCTTTGATAAGCGCGATGGGTCGCAGCTCGATTTGCTCTCTGTTCATGAAACCTCGCAGGAGCCATTGCCTGAGTCGAAGGATGATATTAACTCTGCCCATTCGTTGAGCGTTGAGGCTGCTTATATCAACCAGAATTTCTCTCAGCAGGTGCTTATTAGGGATGGGAATAAGGTTACTTTTGATGAGGCTAACCCTTTTGCTAATGAAGGTGAGGAGGTTGCTTCTGTCGCTTATAGGTATAGGAGGTGGAAGCTTGATGATGATATGTATCTTGTTGCGAGGTGTGAGGTTCATAGTGTTGTTGACGTGAACAAGCAGAGGTCGTTCCTTACTTTGAATGCGTTGAATGAGTTTGATCCCAAGTATTCGGGTGTGGACTGGAGGCAGAAGTTGGAGACTCAGAGGGGTGCTGTGTTGGCCACTGAGCTTAAGAACAATGCAAATAAGTTGGCTAAGTGGACTGCTCAGGCTCTTTTGGCGAGCGCGGATACGATGAAGTTGGGATTAATTTGAACACGACGAATATGTGGGGGATTGTGAAGTCTATTGTGGATTTGTGCATGAAATTGAATGAGGGGAAGTATGTTCTTGTGAAAGATCCATCTAAGCCCCAGGTTAGGATTTACGAGGTTCCTGCGGATGCTTTTGAAAATGACTACGTGGAGGAGCCACTTCCGGAGGATGAACAAGTTCAGCCTCCATCAGAGGGTGCTGAGGGGGGAGAGGCAACTACTACAACTAATGACGTGGAAGATAAGCAGATAGATGGTCAAGCTTAAAAAGGTCATTTTTTTATTGGAGTTGATGGCCGTTCATTTGGAAAAAAAGATCGTACTCGGATAAATTTTCTTTAACACTGCTTATTTGTCGGCCAAAATTTTGCAATATGTGATGTTCCTTTTGGACCAAAAGTTTAAAGCAAAACTTCTTAGTGTTTTTTTTCTATGCTACAGCTGTTTATGATTTACAGACCTTAGCATATTTAAGTGGAACCACCAAAGCAGTAATATCTTTCAAAATTGTATTACGCTCATTTGGGCTTAGGGTTATTATTGTGGTTTACAAATTTCCATGTTTGCACAGAGTGATCTTGAGATTCGCAAGCTACAAACATTTTGGTTTGTTATCGTATTGTAAACGACCAAATTAGATAAAAACATGCTTTTATTTCTTGTATTTTTTGTCTGAACATGCTTTATTTCTTG

Coding sequences of Glyma13g31200

Limit To All Plant Sequences

>Glyma13g31200.1   sequence type=CDS   gene model=Glyma13g31200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAAAGCATTCGACATCGGAGCCGTTCCGTTCAACGCCGAGGGGTGGGGTCCGCCGGACAGCACCATCACCGGCAGCAACATCAACCTCCCTCTGAACGTCCCCTTCGCCCCCTTCTCCCGCTCCGACAAATTGGGCCGCATCGCCGACTGGACCCGCAACTTCAACAACCCGACCCGCTCCAAGAACCCCGCTGACGCCGTCTTTGACTTCACGAACGACGACGACGACGACACCTTCCACCTCGTCGACCCCAAGCCCCCGCCGCGCCCCAAATTTGGTCCCAAGTGGCGCTTCCCGCAGCAGCGCCAGCTCCCTCAGCGCCGCGACGAAGAAGTCGAGGCGAAGAAGCGCGAGCAGGAGAAGGAACGCGCCCGCCGAGATCGTCTCTACCACATGAACCGCTCAAACCCTAATCAGCAGCGCCGTGAAGCCGCTGTTTTCAAATCCTCCGTCGATATCCAACCCGAATGGAACATGCACGACCAGATCCCCTTCAGCACCTTCTCCAAGCTCTCCTTCACCGTTCCCGAACCCGAAGACCTTCTCCTCTGCGGCGCTCTGGAATACTACGACCGCACTTACGATCGCATCACGCCCAAAAACGAACGCCGCCTCGAACGCTTCAAGAATCGAAACTTCTTCAAAGTCACCACCACCGACGACCCCATCATTCGCAGACTCGCCAACGAGGACAAGGCCACCGTTTTCGCCACCGACACGATTCTGTCCACTCTCATGTGTGCCCCTCGTTCTGTTTATTCCTGGGACATTGTCGTCCAGCGTGTCGGAAACAAGCTTTTCTTTGATAAGCGCGATGGGTCGCAGCTCGATTTGCTCTCTGTTCATGAAACCTCGCAGGAGCCATTGCCTGAGTCGAAGGATGATATTAACTCTGCCCATTCGTTGAGCGTTGAGGCTGCTTATATCAACCAGAATTTCTCTCAGCAGGTGCTTATTAGGGATGGGAATAAGGTTACTTTTGATGAGGCTAACCCTTTTGCTAATGAAGGTGAGGAGGTTGCTTCTGTCGCTTATAGGTATAGGAGGTGGAAGCTTGATGATGATATGTATCTTGTTGCGAGGTGTGAGGTTCATAGTGTTGTTGACGTGAACAAGCAGAGGTCGTTCCTTACTTTGAATGCGTTGAATGAGTTTGATCCCAAGTATTCGGGTGTGGACTGGAGGCAGAAGTTGGAGACTCAGAGGGGTGCTGTGTTGGCCACTGAGCTTAAGAACAATGCAAATAAGTTGGCTAAGTGGACTGCTCAGGCTCTTTTGGCGAGCGCGGATACGATGAAGTTGGGGTATGTGTCGAGGATTCATCCCCGTGATCATTTCAATCATGTGATTTTGGCTGTGGTTGGATATAAACCCAGGGACTTTGCGGCACAGATTAATTTGAACACGACGAATATGTGGGGGATTGTGAAGTCTATTGTGGATTTGTGCATGAAATTGAATGAGGGGAAGTATGTTCTTGTGAAAGATCCATCTAAGCCCCAGGTTAGGATTTACGAGGTTCCTGCGGATGCTTTTGAAAATGACTACGTGGAGGAGCCACTTCCGGAGGATGAACAAGTTCAGCCTCCATCAGAGGGTGCTGAGGGGGGAGAGGCAACTACTACAACTAATGACGTGGAAGATAAGCAGATAGATGGTCAAGCTTAA

>Glyma13g31200.2   sequence type=CDS   gene model=Glyma13g31200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAAAGCATTCGACATCGGAGCCGTTCCGTTCAACGCCGAGGGGTGGGGTCCGCCGGACAGCACCATCACCGGCAGCAACATCAACCTCCCTCTGAACGTCCCCTTCGCCCCCTTCTCCCGCTCCGACAAATTGGGCCGCATCGCCGACTGGACCCGCAACTTCAACAACCCGACCCGCTCCAAGAACCCCGCTGACGCCGTCTTTGACTTCACGAACGACGACGACGACGACACCTTCCACCTCGTCGACCCCAAGCCCCCGCCGCGCCCCAAATTTGGTCCCAAGTGGCGCTTCCCGCAGCAGCGCCAGCTCCCTCAGCGCCGCGACGAAGAAGTCGAGGCGAAGAAGCGCGAGCAGGAGAAGGAACGCGCCCGCCGAGATCGTCTCTACCACATGAACCGCTCAAACCCTAATCAGCAGCGCCGTGAAGCCGCTGTTTTCAAATCCTCCGTCGATATCCAACCCGAATGGAACATGCACGACCAGATCCCCTTCAGCACCTTCTCCAAGCTCTCCTTCACCGTTCCCGAACCCGAAGACCTTCTCCTCTGCGGCGCTCTGGAATACTACGACCGCACTTACGATCGCATCACGCCCAAAAACGAACGCCGCCTCGAACGCTTCAAGAATCGAAACTTCTTCAAAGTCACCACCACCGACGACCCCATCATTCGCAGACTCGCCAACGAGGACAAGGCCACCGTTTTCGCCACCGACACGATTCTGTCCACTCTCATGTGTGCCCCTCGTTCTGTTTATTCCTGGGACATTGTCGTCCAGCGTGTCGGAAACAAGCTTTTCTTTGATAAGCGCGATGGGTCGCAGCTCGATTTGCTCTCTGTTCATGAAACCTCGCAGGAGCCATTGCCTGAGTCGAAGGATGATATTAACTCTGCCCATTCGTTGAGCGTTGAGGCTGCTTATATCAACCAGAATTTCTCTCAGCAGGTGCTTATTAGGGATGGGAATAAGGTTACTTTTGATGAGGCTAACCCTTTTGCTAATGAAGGTGAGGAGGTTGCTTCTGTCGCTTATAGGTATAGGAGGTGGAAGCTTGATGATGATATGTATCTTGTTGCGAGGTGTGAGGTTCATAGTGTTGTTGACGTGAACAAGCAGAGGTCGTTCCTTACTTTGAATGCGTTGAATGAGTTTGATCCCAAGTATTCGGGTGTGGACTGGAGGCAGAAGTTGGAGACTCAGAGGGGTGCTGTGTTGGCCACTGAGCTTAAGAACAATGCAAATAAGTTGGCTAAGTGGACTGCTCAGGCTCTTTTGGCGAGCGCGGATACGATGAAGTTGGGATTAATTTGA

Predicted protein sequences of Glyma13g31200

Limit To All Plant Sequences

>Glyma13g31200.1   sequence type=predicted peptide   gene model=Glyma13g31200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKAFDIGAVPFNAEGWGPPDSTITGSNINLPLNVPFAPFSRSDKLGRIADWTRNFNNPTRSKNPADAVFDFTNDDDDDTFHLVDPKPPPRPKFGPKWRFPQQRQLPQRRDEEVEAKKREQEKERARRDRLYHMNRSNPNQQRREAAVFKSSVDIQPEWNMHDQIPFSTFSKLSFTVPEPEDLLLCGALEYYDRTYDRITPKNERRLERFKNRNFFKVTTTDDPIIRRLANEDKATVFATDTILSTLMCAPRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPESKDDINSAHSLSVEAAYINQNFSQQVLIRDGNKVTFDEANPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVHSVVDVNKQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADTMKLGYVSRIHPRDHFNHVILAVVGYKPRDFAAQINLNTTNMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPSEGAEGGEATTTTNDVEDKQIDGQA*

>Glyma13g31200.2   sequence type=predicted peptide   gene model=Glyma13g31200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKAFDIGAVPFNAEGWGPPDSTITGSNINLPLNVPFAPFSRSDKLGRIADWTRNFNNPTRSKNPADAVFDFTNDDDDDTFHLVDPKPPPRPKFGPKWRFPQQRQLPQRRDEEVEAKKREQEKERARRDRLYHMNRSNPNQQRREAAVFKSSVDIQPEWNMHDQIPFSTFSKLSFTVPEPEDLLLCGALEYYDRTYDRITPKNERRLERFKNRNFFKVTTTDDPIIRRLANEDKATVFATDTILSTLMCAPRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPESKDDINSAHSLSVEAAYINQNFSQQVLIRDGNKVTFDEANPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVHSVVDVNKQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADTMKLGLI*

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