Report for Sequence Feature Glyma13g31120
Feature Type: gene_model
Chromosome: Gm13
Start: 33590665
stop: 33592076
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g31120
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G21020 AT
Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant protein (LEA) family protein | chr4:11228263-11229392 FORWARD LENGTH=266
SoyBase E_val: 5.00E-25 ISS
GO:0009793 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
PTHR23241 Panther
LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED
JGI ISS
UniRef100_I1M222 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M222_SOYBN
SoyBase E_val: 6.00E-165 ISS
UniRef100_Q9SPJ6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Maturation protein pPM32 n=1 Tax=Glycine max RepID=Q9SPJ6_SOYBN
SoyBase E_val: 4.00E-108 ISS
Expression Patterns of Glyma13g31120
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g31120
Paralog Evidence Comments
Glyma15g08221 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g31120 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g237700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g31120
Coding sequences of Glyma13g31120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g31120.1 sequence type=CDS gene model=Glyma13g31120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGCCATGTTCTTAACCAGAAGCGCGCTTTTTCGCTTTTCAAAGTCTCTCCCTTATGCCCCTTCACTCTCCCTTAAACCCTCCATGGTCACCTTCTCCTCTACTCCCAATTCAGGCTGGAGAAATGCAGCAGAAGGAGGAAGAAGAGACGGAAGAACCAATTGGACGTATGATTCTGCCGAGGCAAGACGCGAGGCAGATGAAATGTCTGAGAGTGCCAAAGAAACGATGAATGAAGGCTATGACAGGGCCAAGGATCAAGCGCGGGAAGCCAAAGACAGAACAAAGGATTTCGCACACGACGCAATGGAGAAGACGAAGGACGCTGCGGGGTCGATGAGGGACAGGGCGGAGAGTGCGGCGGAGAAGACGAAAGAGTATGCTTACGACACAAAAGAGAGTGCCAAGGACGCGGCGGGAACGGTGGCGGACAAGAGTAGGGAGGGGGCTGAGAGGACGAAGGAGAAGACGGAGGAGGTGGCGGCGTCGGCGGGGGAGGCGCTGAAGAACGTGGGGGAGAAGGCGAAGCAGGGCGTGCAAGGGGCGTGGGAGACGGCGAAGGACACTACGCAGAAGATCAAGGAGACGGTGGTTGGCAAGGATGATGATGATGATGATGATCATGGTGATGGTCATGGTGGTCTTAAGGATGATGATGTTGTGGAGATGAGGAGGAGAGTTGGTAAGAGATTACCATGA
Predicted protein sequences of Glyma13g31120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g31120.1 sequence type=predicted peptide gene model=Glyma13g31120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAMFLTRSALFRFSKSLPYAPSLSLKPSMVTFSSTPNSGWRNAAEGGRRDGRTNWTYDSAEARREADEMSESAKETMNEGYDRAKDQAREAKDRTKDFAHDAMEKTKDAAGSMRDRAESAAEKTKEYAYDTKESAKDAAGTVADKSREGAERTKEKTEEVAASAGEALKNVGEKAKQGVQGAWETAKDTTQKIKETVVGKDDDDDDDHGDGHGGLKDDDVVEMRRRVGKRLP*