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Report for Sequence Feature Glyma13g31076

Feature Type:gene_model
Chromosome:Gm13
Start:33537599
stop:33544646
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G28320AT Annotation by Michelle Graham. TAIR10: protease-related | chr1:9920673-9924347 REVERSE LENGTH=709 SoyBaseE_val: 0ISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004175GO-mf Annotation by Michelle Graham. GO Molecular Function: endopeptidase activity SoyBaseN/AISS
PTHR21004Panther SERINE PROTEASE-RELATED JGI ISS
PF00089PFAM Trypsin JGI ISS
UniRef100_G7ISD6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal leader peptide-processing protease n=1 Tax=Medicago truncatula RepID=G7ISD6_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233B36DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B36D related cluster n=1 Tax=unknown RepID=UPI000233B36D SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g31076 not represented in the dataset

Glyma13g31076 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma15g08281 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g237200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g31076.2   sequence type=transcript   gene model=Glyma13g31076   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAAATGAAATGAACTTTTATATAAGCTAAAATTAGCTTATGCATAAGCTTATTTGTAGAAGTTCTCTCATATTAGCTTTTCTTAAAAACGGTTTTTAACTTATGCATAAGCTAGTTTTAGCTTATGGAGAAACTTATTTCATTTTTGTTTCTTATTTTCTTCTCTTAGAGGTGTTTATGTAAAAATTTATCTAAGCATGCACTTCGTAATTGGGTAGGCCAGACTTGATTGCCGGTGTTCAGATTGATGTTATGACCGAGGAAACCAATGAAAAATCCAATCGGGGAACTCCTTGTTGGCTTTTGGCACAGCTTTTGTCATTAGTTGATATTCCTGCTTCATCGAATTGTCTCCAGTCACTTATTGAAGCGTCTTTGGGCTTGCCAGAGCATGAATGGGAGGTTGGTTGGTCTTTGGCATCTTACAATAATGATTCTCAACCTTCCAAAGATTTTTTTCAAACTCATCCTCGGGAAAGATTGGCTGCGGGAGGATCTGGCAGTGCAAGTCTTGTGTACAAATCACTTACTCGAATGGCAATTCTTAGTGTTTCTTTATCTTTCAGGGACTTGCTGGATAGTAAAGTATCTGCCATGAATAAAAGAGGTGATTTTCTTCTGGCAGTTGGATCTCCTTTTGGAGTCCTGTCACCTATGCACTTTTTTAACAGCATCTCTGTAGGATGCATTGCAAACTGCTATCCTCCTCATTCATCTGATGGATCGTTGCTGATGGCTGACATACGCTGTCTTCCTGGAATGGAAGGCAGTCCAGTTTTCAGTGAGCATGCATGTCTTATTGGTGTCCTGATCAGACCATTCAGACAGAAGGCGTATGGAGCGGAAATCCAGCTGGTGATTCCATGGGATGCCATTGTGACTGCTTCTAGTGGCTTGCTGCACAAGAGGCCTCAGAACACACAGAAAGGTTTATGTAATCAGGAGGGCAACCTTTATGCTGCAGGAAGTGTACCTTTTTCTGACACTGACAAATTAGATGTTTGCTCTAGGAATAAACACGAGCATTTATATTTTGGTAGCTCGTCACCATTACCAATTGAGAAGGCAATGACTTCTGTCTGTCTTGTTACTATTGGTGATGGAGTATGGGCATCTGGTGTTTTACTAAATAGTCAAGGTCTCATACTTACAAATGCTCATCTGTTGGAACCATGGAGATTCGGGAAAGAACATGTAAATGGAGGAGGATATGGAACTAATTCAGAAAAGATTTCTTCCATGTTGGAGGGAACTGCATATGTTGTTAACAGAGTTGAGAGCAATCAAGTTAGTCAAACTTCACCGTTGAAGATGCCAATTCTTTATCCTTTCGCTGCGAATGAGCAGGGGGGATATAAGTCGAGTCCAACTTATGACAACCATAGAAACATACGTGTACGTCTTGATCATATCAAATCTTGGGTTTGGTGTGATGCAAAAGTAGTGTATGTTTGTAAAGGACCATGGGATGTTGCCTTACTGCAGCTTGAATCTGTTCCAGATGATCTTTTGCCTATAACAATGAATTTTTCTAGGCCATCCACAGGATCACAGGCATTTGTCATTGGCCATGGATTATTTGGCCCAAAGCACGGATTCTTCCCATCTGTTTGCTCTGGTGTGGTAGCAAAAGTGGTTGAGGCAAAGACTCCTCAATCTTATCTGTCCGTTCAGCCAGAACATCTCCACAACCATGAGCACTTCCCAGCAATGCTTGAAACAACAGCTGCTATTCATCCTGGTGCTAGTGGTGGTGCTATTATCAATTCAGATGGTCACATGATTGGCCTGGTTACAAGCAATGCAAGGCATAGTGGAGGAGCAATAATACCTCAACTTAATTTTAGCATTCCATCTGCTGCTTTGGCACCCATCGTCAACTTCTCAAAAGCCATGGAGGATTTATCACTTCTACGGATTCTAGACGAACCGAACGAATACCTTTCATCTGTATGGGCATTGATGCGGCCATCATATCCTAATCCCCATCCTATGCATGATCCACCTCAGTCGGTTACAGACAATAAAAGTAAAGAGAAGGGTTCTCGGTTTGCTAAGTTTATTGCTGAAAGAAAGGACATTTTCAATGCTGGAAAGAGTGGAGTGATTTCTAAGGAAGTTATTGCTAGTAAGTTATGATCTCTGATGAAGTGACAAAGTTTACCTAAATGACCATGGCAAAGCTTTGCCAACATACAACTTGTCAATGACTACACTTCCGTTGATTAAAATCTTTGGACTGAAATCTTCTGCCCTAGATTGTTAGCCAAAGAAAATCAAGGAAATAAATTTTCTAGAATCTCTAAACGATTATACTAGTACTTAATTAAAGTTTAAAACTGATTTTACATAAGACAGTTACTTTTGTTTTGTACTTTGGTTGAGATTAAGTAATTATAGGAGAAACTCTTGATAGAGTTACTTTGTTCAACTTTTGTGTATATATATATATATATATATATATAT

>Glyma13g31076.1   sequence type=CDS   gene model=Glyma13g31076   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCCAAATTCCTCCCAGGTCCCAACCAGGAAAAATGGTTCTGTCGGATGCCGTTAATTTTGCTCGGAATTTCGCAGTTATGGTCAGAGTTCGTGGCCCTGACCCAAAAGGGTTGAAGATGAGAAATCACGCTTTTCATCAATACCGTTCTGGTGAAACAACCCTTTCAGCTTCGGGGGTACTTGTACCTGATACTCTTTGTGATTCTCAAGTAGCTACGCGTCTTAATGGTGATAACTGTGAGGATAGGGTATTGGTTGTAACGGTTGCTTCAGTTGTTGAGCCTTTTCTGTCACCTCAACAGAGAGACAATATTCCTCAGGGTAGGCCAGACTTGATTGCCGGTGTTCAGATTGATGTTATGACCGAGGAAACCAATGAAAAATCCAATCGGGGAACTCCTTGTTGGCTTTTGGCACAGCTTTTGTCATTAGTTGATATTCCTGCTTCATCGAATTGTCTCCAGTCACTTATTGAAGCGTCTTTGGGCTTGCCAGAGCATGAATGGGAGGTTGGTTGGTCTTTGGCATCTTACAATAATGATTCTCAACCTTCCAAAGATTTTTTTCAAACTCATCCTCGGGAAAGATTGGCTGCGGGAGGATCTGGCAGTGCAAGTCTTGTGTACAAATCACTTACTCGAATGGCAATTCTTAGTGTTTCTTTATCTTTCAGGGACTTGCTGGATAGTAAAGTATCTGCCATGAATAAAAGAGGTGATTTTCTTCTGGCAGTTGGATCTCCTTTTGGAGTCCTGTCACCTATGCACTTTTTTAACAGCATCTCTGTAGGATGCATTGCAAACTGCTATCCTCCTCATTCATCTGATGGATCGTTGCTGATGGCTGACATACGCTGTCTTCCTGGAATGGAAGGCAGTCCAGTTTTCAGTGAGCATGCATGTCTTATTGGTGTCCTGATCAGACCATTCAGACAGAAGGCGTATGGAGCGGAAATCCAGCTGGTGATTCCATGGGATGCCATTGTGACTGCTTCTAGTGGCTTGCTGCACAAGAGGCCTCAGAACACACAGAAAGGTTTATGTAATCAGGAGGGCAACCTTTATGCTGCAGGAAGTGTACCTTTTTCTGACACTGACAAATTAGATGTTTGCTCTAGGAATAAACACGAGCATTTATATTTTGGTAGCTCGTCACCATTACCAATTGAGAAGGCAATGACTTCTGTCTGTCTTGTTACTATTGGTGATGGAGTATGGGCATCTGGTGTTTTACTAAATAGTCAAGGTCTCATACTTACAAATGCTCATCTGTTGGAACCATGGAGATTCGGGAAAGAACATGTAAATGGAGGAGGATATGGAACTAATTCAGAAAAGATTTCTTCCATGTTGGAGGGAACTGCATATGTTGTTAACAGAGTTGAGAGCAATCAAGTTAGTCAAACTTCACCGTTGAAGATGCCAATTCTTTATCCTTTCGCTGCGAATGAGCAGGGGGGATATAAGTCGAGTCCAACTTATGACAACCATAGAAACATACGTGTACGTCTTGATCATATCAAATCTTGGGTTTGGTGTGATGCAAAAGTAGTGTATGTTTGTAAAGGACCATGGGATGTTGCCTTACTGCAGCTTGAATCTGTTCCAGATGATCTTTTGCCTATAACAATGAATTTTTCTAGGCCATCCACAGGATCACAGGCATTTGTCATTGGCCATGGATTATTTGGCCCAAAGCACGGATTCTTCCCATCTGTTTGCTCTGGTGTGGTAGCAAAAGTGGTTGAGGCAAAGACTCCTCAATCTTATCTGTCCGTTCAGCCAGAACATCTCCACAACCATGAGCACTTCCCAGCAATGCTTGAAACAACAGCTGCTATTCATCCTGGTGCTAGTGGTGGTGCTATTATCAATTCAGATGGTCACATGATTGGCCTGGTTACAAGCAATGCAAGGCATAGTGGAGGAGCAATAATACCTCAACTTAATTTTAGCATTCCATCTGCTGCTTTGGCACCCATCGTCAACTTCTCAAAAGCCATGGAGGATTTATCACTTCTACGGATTCTAGACGAACCGAACGAATACCTTTCATCTGTATGGGCATTGATGCGGCCATCATATCCTAATCCCCATCCTATGCATGATCCACCTCAGTCGGTTACAGACAATAAAAGTAAAGAGAAGGGTTCTCGGTTTGCTAAGTTTATTGCTGAAAGAAAGGACATTTTCAATGCTGGAAAGAGTGGAGTGATTTCTAAGGAAGTTATTGCTAGTAAGTTATGA

>Glyma13g31076.2   sequence type=CDS   gene model=Glyma13g31076   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCGAGGAAACCAATGAAAAATCCAATCGGGGAACTCCTTGTTGGCTTTTGGCACAGCTTTTGTCATTAGTTGATATTCCTGCTTCATCGAATTGTCTCCAGTCACTTATTGAAGCGTCTTTGGGCTTGCCAGAGCATGAATGGGAGGTTGGTTGGTCTTTGGCATCTTACAATAATGATTCTCAACCTTCCAAAGATTTTTTTCAAACTCATCCTCGGGAAAGATTGGCTGCGGGAGGATCTGGCAGTGCAAGTCTTGTGTACAAATCACTTACTCGAATGGCAATTCTTAGTGTTTCTTTATCTTTCAGGGACTTGCTGGATAGTAAAGTATCTGCCATGAATAAAAGAGGTGATTTTCTTCTGGCAGTTGGATCTCCTTTTGGAGTCCTGTCACCTATGCACTTTTTTAACAGCATCTCTGTAGGATGCATTGCAAACTGCTATCCTCCTCATTCATCTGATGGATCGTTGCTGATGGCTGACATACGCTGTCTTCCTGGAATGGAAGGCAGTCCAGTTTTCAGTGAGCATGCATGTCTTATTGGTGTCCTGATCAGACCATTCAGACAGAAGGCGTATGGAGCGGAAATCCAGCTGGTGATTCCATGGGATGCCATTGTGACTGCTTCTAGTGGCTTGCTGCACAAGAGGCCTCAGAACACACAGAAAGGTTTATGTAATCAGGAGGGCAACCTTTATGCTGCAGGAAGTGTACCTTTTTCTGACACTGACAAATTAGATGTTTGCTCTAGGAATAAACACGAGCATTTATATTTTGGTAGCTCGTCACCATTACCAATTGAGAAGGCAATGACTTCTGTCTGTCTTGTTACTATTGGTGATGGAGTATGGGCATCTGGTGTTTTACTAAATAGTCAAGGTCTCATACTTACAAATGCTCATCTGTTGGAACCATGGAGATTCGGGAAAGAACATGTAAATGGAGGAGGATATGGAACTAATTCAGAAAAGATTTCTTCCATGTTGGAGGGAACTGCATATGTTGTTAACAGAGTTGAGAGCAATCAAGTTAGTCAAACTTCACCGTTGAAGATGCCAATTCTTTATCCTTTCGCTGCGAATGAGCAGGGGGGATATAAGTCGAGTCCAACTTATGACAACCATAGAAACATACGTGTACGTCTTGATCATATCAAATCTTGGGTTTGGTGTGATGCAAAAGTAGTGTATGTTTGTAAAGGACCATGGGATGTTGCCTTACTGCAGCTTGAATCTGTTCCAGATGATCTTTTGCCTATAACAATGAATTTTTCTAGGCCATCCACAGGATCACAGGCATTTGTCATTGGCCATGGATTATTTGGCCCAAAGCACGGATTCTTCCCATCTGTTTGCTCTGGTGTGGTAGCAAAAGTGGTTGAGGCAAAGACTCCTCAATCTTATCTGTCCGTTCAGCCAGAACATCTCCACAACCATGAGCACTTCCCAGCAATGCTTGAAACAACAGCTGCTATTCATCCTGGTGCTAGTGGTGGTGCTATTATCAATTCAGATGGTCACATGATTGGCCTGGTTACAAGCAATGCAAGGCATAGTGGAGGAGCAATAATACCTCAACTTAATTTTAGCATTCCATCTGCTGCTTTGGCACCCATCGTCAACTTCTCAAAAGCCATGGAGGATTTATCACTTCTACGGATTCTAGACGAACCGAACGAATACCTTTCATCTGTATGGGCATTGATGCGGCCATCATATCCTAATCCCCATCCTATGCATGATCCACCTCAGTCGGTTACAGACAATAAAAGTAAAGAGAAGGGTTCTCGGTTTGCTAAGTTTATTGCTGAAAGAAAGGACATTTTCAATGCTGGAAAGAGTGGAGTGATTTCTAAGGAAGTTATTGCTAGTAAGTTATGA

>Glyma13g31076.1   sequence type=predicted peptide   gene model=Glyma13g31076   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQIPPRSQPGKMVLSDAVNFARNFAVMVRVRGPDPKGLKMRNHAFHQYRSGETTLSASGVLVPDTLCDSQVATRLNGDNCEDRVLVVTVASVVEPFLSPQQRDNIPQGRPDLIAGVQIDVMTEETNEKSNRGTPCWLLAQLLSLVDIPASSNCLQSLIEASLGLPEHEWEVGWSLASYNNDSQPSKDFFQTHPRERLAAGGSGSASLVYKSLTRMAILSVSLSFRDLLDSKVSAMNKRGDFLLAVGSPFGVLSPMHFFNSISVGCIANCYPPHSSDGSLLMADIRCLPGMEGSPVFSEHACLIGVLIRPFRQKAYGAEIQLVIPWDAIVTASSGLLHKRPQNTQKGLCNQEGNLYAAGSVPFSDTDKLDVCSRNKHEHLYFGSSSPLPIEKAMTSVCLVTIGDGVWASGVLLNSQGLILTNAHLLEPWRFGKEHVNGGGYGTNSEKISSMLEGTAYVVNRVESNQVSQTSPLKMPILYPFAANEQGGYKSSPTYDNHRNIRVRLDHIKSWVWCDAKVVYVCKGPWDVALLQLESVPDDLLPITMNFSRPSTGSQAFVIGHGLFGPKHGFFPSVCSGVVAKVVEAKTPQSYLSVQPEHLHNHEHFPAMLETTAAIHPGASGGAIINSDGHMIGLVTSNARHSGGAIIPQLNFSIPSAALAPIVNFSKAMEDLSLLRILDEPNEYLSSVWALMRPSYPNPHPMHDPPQSVTDNKSKEKGSRFAKFIAERKDIFNAGKSGVISKEVIASKL*

>Glyma13g31076.2   sequence type=predicted peptide   gene model=Glyma13g31076   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEETNEKSNRGTPCWLLAQLLSLVDIPASSNCLQSLIEASLGLPEHEWEVGWSLASYNNDSQPSKDFFQTHPRERLAAGGSGSASLVYKSLTRMAILSVSLSFRDLLDSKVSAMNKRGDFLLAVGSPFGVLSPMHFFNSISVGCIANCYPPHSSDGSLLMADIRCLPGMEGSPVFSEHACLIGVLIRPFRQKAYGAEIQLVIPWDAIVTASSGLLHKRPQNTQKGLCNQEGNLYAAGSVPFSDTDKLDVCSRNKHEHLYFGSSSPLPIEKAMTSVCLVTIGDGVWASGVLLNSQGLILTNAHLLEPWRFGKEHVNGGGYGTNSEKISSMLEGTAYVVNRVESNQVSQTSPLKMPILYPFAANEQGGYKSSPTYDNHRNIRVRLDHIKSWVWCDAKVVYVCKGPWDVALLQLESVPDDLLPITMNFSRPSTGSQAFVIGHGLFGPKHGFFPSVCSGVVAKVVEAKTPQSYLSVQPEHLHNHEHFPAMLETTAAIHPGASGGAIINSDGHMIGLVTSNARHSGGAIIPQLNFSIPSAALAPIVNFSKAMEDLSLLRILDEPNEYLSSVWALMRPSYPNPHPMHDPPQSVTDNKSKEKGSRFAKFIAERKDIFNAGKSGVISKEVIASKL*







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