Glyma13g31060 - SoyBase

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Report for Sequence Feature Glyma13g31060

Feature Type:	gene_model
Chromosome:	Gm13
Start:	33530055
stop:	33531333
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g31060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28330	AT	Annotation by Michelle Graham. TAIR10: dormancy-associated protein-like 1 \| chr1:9934252-9935216 REVERSE LENGTH=122	SoyBase	E_val: 4.00E-42	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05564	PFAM	Dormancy/auxin associated protein	JGI		ISS
UniRef100_A5JSU3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-repressed protein n=1 Tax=Sesbania drummondii RepID=A5JSU3_9FABA	SoyBase	E_val: 9.00E-52	ISS
UniRef100_C6TKV0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TKV0_SOYBN	SoyBase	E_val: 9.00E-79	ISS

Expression Patterns of Glyma13g31060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g31060

Paralog	Evidence	Comments
Glyma15g08300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g31060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g237000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g31060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g31060

Limit To All Plant Sequences

>Glyma13g31060.2   sequence type=transcript   gene model=Glyma13g31060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACTTGGAAGCAGCAAAACACTCCATCCCACTTTTACTAACGATCACCCTTCTATAAATAGAACCTGCACAACCTCATTACTCACTTTTTCTTTTCATCCATCGATTAAAGACTTGCTTCCAAGATGGTTCTGCTAGAGAAGCTCTGGGATGACGTTGTTGCTGGCCCTCAACCTGAGCGTGGCCTTGGCAAGCTCAGAAAACTCACCACCCTCAAAACTATTGATGAAGGAGACAGTAGCAAGCTGCAGAAGACGTTGTCGATGCCGTCGACACCGACAATCCCGATGACTCCCACGACTCCAACGACACCGGGATCCGCGCGTAAAGCTGACAACGTTTGGAGGAGCGTCTTCCATCCTGGGAGCAACTCCGCCACAAAGACCATCGGTGCTCAGATGTTTGACAAACCACTTCCCAACACTCCCACTGTCTACGACTGGTAATATTATTGTTTCTTCTTTTAATAAAAAAAACTTTACAAATTATGAATTCATTTTTGGCAACCTTTGATTTGTTGGCGTTGCTACGTTCTTTTGGCCATAACTCATCAACAACTTTGCATGCATACATAATAACAAGTTGATTCATATTTTTTGTTCTTATTAAAAGAAATTACAAGGGGTGATTTTTGTCTGCTAAGTTGTAAAAAATATGTATAATAGGATTGGGGTGATGTGAGCCGTTAGATCTTGTGAGAAATCGACGGTTGATATGTATGTATATTGCGGTATAATGAAGCGAGTTGTATGTGATTGCAGGCTGTACAGTGGGGAGACCAGAAGCAGGCACCGCTGAAAGGATAAGCTAAGAAAACCGTGGGTTGCATGTAAATATTGTCGTTTTTCGTTAAGCACCTGCCACGTTTGAATCTACTACTACCATTATGCGTCGGAAATTAATTGCTCTGTTGCTGACTCAAATATATATTACTAGCGTGTTTGATTTTGAGCAAGTGAATGTAAAATGCTAAATAATTACCGTAATTAGCATCAGTATGCTATGTTTTGTTAAGCCAGATCTGCCTTCAACTTTGGCAATTGGTTAATCTTTTTCTCCCTCTGTTAAATGATTAATATATATTAAAATAAATAAATATTATATTTTCTAAATCTGTAACTAGTCAGTGCCATCTGTATTTATGCAACTTCAACTCAACTAAAATATAATTACATATGTTCAAAGTT

>Glyma13g31060.3   sequence type=transcript   gene model=Glyma13g31060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACTTGGAAGCAGCAAAACACTCCATCCCACTTTTACTAACGATCACCCTTCTATAAATAGAACCTGCACAACCTCATTACTCACTTTTTCTTTTCATCCATCGATTAAAGACTTGCTTCCAAGATGGTTCTGCTAGAGAAGCTCTGGGATGACGTTGTTGCTGGCCCTCAACCTGAGCGTGGCCTTGGCAAGCTCAGAAAACTCACCACCCTCAAAACTAGAGACAGTAGCAAGCTGCAGAAGACGTTGTCGATGCCGTCGACACCGACAATCCCGATGACTCCCACGACTCCAACGACACCGGGATCCGCGCGTAAAGCTGACAACGTTTGGAGGAGCGTCTTCCATCCTGGGAGCAACTCCGCCACAAAGACCATCGGTGCTCAGATGTTTGACAAACCACTTCCCAACACTCCCACTGTCTACGACTGGCTGTACAGTGGGGAGACCAGAAGCAGGCACCGCTGAAAGGATAAGCTAAGAAAACCGTGGGTTGCATGTAAATATTGTCGTTTTTCGTTAAGCACCTGCCACGTTTGAATCTACTACTACCATTATGCGTCGGAAATTAATTGCTCTGTTGCTGACTCAAATATATATTACTAGCGTGTTTGATTTTGAGCAAGTGAATGTAAAATGCTAAATAATTACCGTAATTAGCATCAGTATGCTATGTTTTGTTAAGCCAGATCTGCCTTCAACTTTGGCAATTGGTTAATCTTTTTCTCCCTCTGTTAAATGATTAATATATATTAAAATAAATAAATATTATATTTTCTAAATCTGTAACTAGTCAGTGCCATCTGTATTTATGCAACTTCAACTCAACTAAAATATAATTACATATGTTCAAAGTT

>Glyma13g31060.4   sequence type=transcript   gene model=Glyma13g31060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACTTGGAAGCAGCAAAACACTCCATCCCACTTTTACTAACGATCACCCTTCTATAAATAGAACCTGCACAACCTCATTACTCACTTTTTCTTTTCATCCATCGATTAAAGACTTGCTTCCAAGATGGTTCTGCTAGAGAAGCTCTGGGATGACGTTGTTGCTGGCCCTCAACCTGAGCGTGGCCTTGGCAAGCTCAGAAAACTCACCACCCTCAAAACTATGTTTGATTGTTGATATAGTTGATGAAGGAGACAGTAGCAAGCTGCAGAAGACGTTGTCGATGCCGTCGACACCGACAATCCCGATGACTCCCACGACTCCAACGACACCGGGATCCGCGCGTAAAGCTGACAACGTTTGGAGGAGCGTCTTCCATCCTGGGAGCAACTCCGCCACAAAGACCATCGGTGCTCAGATGTTTGACAAACCACTTCCCAACACTCCCACTGTCTACGACTGGCTGTACAGTGGGGAGACCAGAAGCAGGCACCGCTGAAAGGATAAGCTAAGAAAACCGTGGGTTGCATGTAAATATTGTCGTTTTTCGTTAAGCACCTGCCACGTTTGAATCTACTACTACCATTATGCGTCGGAAATTAATTGCTCTGTTGCTGACTCAAATATATATTACTAGCGTGTTTGATTTTGAGCAAGTGAATGTAAAATGCTAAATAATTACCGTAATTAGCATCAGTATGCTATGTTTTGTTAAGCCAGATCTGCCTTCAACTTTGGCAATTGGTTAATCTTTTTCTCCCTCTGTTAAATGATTAATATATATTAAAATAAATAAATATTATATTTTCTAAATCTGTAACTAGTCAGTGCCATCTGTATTTATGCAACTTCAACTCAACTAAAATATAATTACATATGTTCAAAGTT

Coding sequences of Glyma13g31060

Limit To All Plant Sequences

>Glyma13g31060.1   sequence type=CDS   gene model=Glyma13g31060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCTGCTAGAGAAGCTCTGGGATGACGTTGTTGCTGGCCCTCAACCTGAGCGTGGCCTTGGCAAGCTCAGAAAACTCACCACCCTCAAAACTATTGATGAAGGAGACAGTAGCAAGCTGCAGAAGACGTTGTCGATGCCGTCGACACCGACAATCCCGATGACTCCCACGACTCCAACGACACCGGGATCCGCGCGTAAAGCTGACAACGTTTGGAGGAGCGTCTTCCATCCTGGGAGCAACTCCGCCACAAAGACCATCGGTGCTCAGATGTTTGACAAACCACTTCCCAACACTCCCACTGTCTACGACTGGCTGTACAGTGGGGAGACCAGAAGCAGGCACCGCTGA

>Glyma13g31060.2   sequence type=CDS   gene model=Glyma13g31060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCTGCTAGAGAAGCTCTGGGATGACGTTGTTGCTGGCCCTCAACCTGAGCGTGGCCTTGGCAAGCTCAGAAAACTCACCACCCTCAAAACTATTGATGAAGGAGACAGTAGCAAGCTGCAGAAGACGTTGTCGATGCCGTCGACACCGACAATCCCGATGACTCCCACGACTCCAACGACACCGGGATCCGCGCGTAAAGCTGACAACGTTTGGAGGAGCGTCTTCCATCCTGGGAGCAACTCCGCCACAAAGACCATCGGTGCTCAGATGTTTGACAAACCACTTCCCAACACTCCCACTGTCTACGACTGGTAA

>Glyma13g31060.3   sequence type=CDS   gene model=Glyma13g31060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCTGCTAGAGAAGCTCTGGGATGACGTTGTTGCTGGCCCTCAACCTGAGCGTGGCCTTGGCAAGCTCAGAAAACTCACCACCCTCAAAACTAGAGACAGTAGCAAGCTGCAGAAGACGTTGTCGATGCCGTCGACACCGACAATCCCGATGACTCCCACGACTCCAACGACACCGGGATCCGCGCGTAAAGCTGACAACGTTTGGAGGAGCGTCTTCCATCCTGGGAGCAACTCCGCCACAAAGACCATCGGTGCTCAGATGTTTGACAAACCACTTCCCAACACTCCCACTGTCTACGACTGGCTGTACAGTGGGGAGACCAGAAGCAGGCACCGCTGA

>Glyma13g31060.4   sequence type=CDS   gene model=Glyma13g31060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGTTGTTGCTGGCCCTCAACCTGAGCGTGGCCTTGGCAAGCTCAGAAAACTCACCACCCTCAAAACTATGTTTGATTGTTGATATAGTTGATGAAGGAGACAGTAGCAAGCTGCAGAAGACGTTGTCGATGCCGTCGACACCGACAATCCCGATGACTCCCACGACTCCAACGACACCGGGATCCGCGCGTAAAGCTGACAACGTTTGGAGGAGCGTCTTCCATCCTGGGAGCAACTCCGCCACAAAGACCATCGGTGCTCAGATGTTTGACAAACCACTTCCCAACACTCCCACTGTCTACGACTGGCTGTACAGTGGGGAGACCAGAAGCAGGCACCGCTGA

Predicted protein sequences of Glyma13g31060

Limit To All Plant Sequences

>Glyma13g31060.1   sequence type=predicted peptide   gene model=Glyma13g31060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLLEKLWDDVVAGPQPERGLGKLRKLTTLKTIDEGDSSKLQKTLSMPSTPTIPMTPTTPTTPGSARKADNVWRSVFHPGSNSATKTIGAQMFDKPLPNTPTVYDWLYSGETRSRHR*

>Glyma13g31060.2   sequence type=predicted peptide   gene model=Glyma13g31060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLLEKLWDDVVAGPQPERGLGKLRKLTTLKTIDEGDSSKLQKTLSMPSTPTIPMTPTTPTTPGSARKADNVWRSVFHPGSNSATKTIGAQMFDKPLPNTPTVYDW*

>Glyma13g31060.3   sequence type=predicted peptide   gene model=Glyma13g31060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLLEKLWDDVVAGPQPERGLGKLRKLTTLKTRDSSKLQKTLSMPSTPTIPMTPTTPTTPGSARKADNVWRSVFHPGSNSATKTIGAQMFDKPLPNTPTVYDWLYSGETRSRHR*

>Glyma13g31060.4   sequence type=predicted peptide   gene model=Glyma13g31060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLLLALNLSVALASSENSPPSKLCLIVDIVDEGDSSKLQKTLSMPSTPTIPMTPTTPTTPGSARKADNVWRSVFHPGSNSATKTIGAQMFDKPLPNTPTVYDWLYSGETRSRHR*

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