Glyma13g30971 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma13g30971): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma13g30971): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma13g30971

Feature Type:	gene_model
Chromosome:	Gm13
Start:	33441183
stop:	33443981
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g30971

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33847	AT	Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr2:14319280-14320522 REVERSE LENGTH=93	SoyBase	E_val: 6.00E-30	ISS
UniRef100_F4IVG2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nuclear fusion defective 6 n=1 Tax=Arabidopsis thaliana RepID=F4IVG2_ARATH	SoyBase	E_val: 2.00E-13	ISS
UniRef100_UPI000233ADE8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233ADE8 related cluster n=1 Tax=unknown RepID=UPI000233ADE8	SoyBase	E_val: 6.00E-61	ISS

Expression Patterns of Glyma13g30971

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g30971 not represented in the dataset	Glyma13g30971 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g30971

Paralog	Evidence	Comments
Glyma15g08400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g30971 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g236300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g30971

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g30971

Limit To All Plant Sequences

>Glyma13g30971.2   sequence type=transcript   gene model=Glyma13g30971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAACATTTCAGAAAGGTGCAGGATGCAAATTTTGGGATGCATGAAGCAATAGCCCAATGAAGAAGCACTTGATGTTACTAGGCCCAAGGAAGTCCAATGTAGCAGCAATCCAAAAAGAGAATCCAAGCCCATCGCGCTTGAGCGAAAGTAGGAACAAAGCAAAAAAAAAATGCAAAACCCCAGAACCGGAAGGCAAAACCCCTTGGTGTTGATTCTTGACGATGTCCGCCGCCAGGTGTTTGCTGCGCTCCGCCGTCTCCCGAGCTGCCGGTGCGGCAAATCTGGCTGCCGGAGCTAGAACGAAGCCTGCACGATCTCCGTTTCGGCTCCCAAAGCAAACCTCAATCTCCAATCGCGTTTTCAGGTTACCGGTGGAAGCGAGTTTCTGCGTGGAATCGATGCTTCCTTATCACAGTGCTACTGCTTCTGCATTGCTGAATTCGATGCTCTCTGTGTCTCGCCACTCCTACGGTTGGACCCCTGAAGGGCAAGAGAAGACTAGATGAAGACCAAGCATCAAAGATGGTGTCACATGGATTTGTTTCAAATTTTGGGTTTTGAAGCTTTGAGAACTTGACTTCCGTAGATTAGGAAGAGCATAAAATTTCTAAATTGAATGTAAAATGAGATACTGAAAACCATATCTCATGAAAACTAATGTGGGGCTATGGTGCAATTCAATGGTATTTCTTAGTAGTTCCCCAATTACATTAATTTATCTGCTATAGCTTCTCATAACAAAGAACTTTCACTATGAGTTAATGAGCAATGCTCCTCTCTATCTCATTCTCCTTCTCTTAAAAAAAGTATTATGGATTGTCTTAGTTAGTGCATCCCATTTTC

>Glyma13g30971.3   sequence type=transcript   gene model=Glyma13g30971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAACATTTCAGAAAGGTGCAGGATGCAAATTTTGGGATGCATGAAGCAATAGCCCAATGAAGAAGCACTTGATGTTACTAGGCCCAAGGAAGTCCAATGTAGCAGCAATCCAAAAAGAGAATCCAAGCCCATCGCGCTTGAGCGAAAGTAGGAACAAAGCAAAAAAAAAATGCAAAACCCCAGAACCGGAAGGCAAAACCCCTTGGTGTTGATTCTTGACGATGTCCGCCGCCAGGTGTTTGCTGCGCTCCGCCGTCTCCCGAGCTGCCGGTGCGGCAAATCTGGCTGCCGGAGCTAGAACGAAGCCTGCACGATCTCCGTTTCGGCTCCCAAAGCAAACCTCAATCTCCAATCGCGTTTTCAGGTTACCGGTGGAAGCGAGTTTCTGCGTGGAATCGATGCTTCCTTATCACAGTGCTACTGCTTCTGCATTGCTGAATTCGATGCTCTCTGTGTCTCGCCACTCCTACGGTTGGACCCCTGAAGGGTCGTGATCATTTGCTCTTTGGCTTTTAGGCTTGAGGAGTAGCCATGTAATGTTTCGTCATTTCCATTTTGCCTTGCTTTCCCTGACCTCGATGGATTTATGTTTTGTATCTAAATGATTTACATTTTAACATTTACTATTGTACATTAGTATGATAGTGTATTGATTTGAATTTTCTCAAGTTATTGTCTTCTTGAATTCTAGATGGATGATTGCTGTTTGTGGGTGCGGTGCATCTGCACATACTTTGTATGGATTTCAGTTTACATTTTTAGGACTGCTTAGAGATTTTTCTCCTTCGTTGAATATGAAACCTCGAAGACATATAAATTGTACATGCATCCAGAGCGGGTACCATGCTTAGGTATGATGATGACTCTTTTAGTACATTATTGTAACATTTCATTACTTGCGATTTACAATGATTTACTTCACCCTGTTCTTGGAAATGGTTTACTTACTCCAAGTGTTAGTAAACATTGCCCTTATTT

Coding sequences of Glyma13g30971

Limit To All Plant Sequences

>Glyma13g30971.1   sequence type=CDS   gene model=Glyma13g30971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGCCGCCAGGTGTTTGCTGCGCTCCGCCGTCTCCCGAGCTGCCGGTGCGGCAAATCTGGCTGCCGGAGCTAGAACGAAGCCTGCACGATCTCCGTTTCGGCTCCCAAAGCAAACCTCAATCTCCAATCGCGTTTTCAGGTTACCGGTGGAAGCGAGTTTCTGCGTGGAATCGATGCTTCCTTATCACAGTGCTACTGCTTCTGCATTGCTGAATTCGATGCTCTCTGTGTCTCGCCACTCCTACGGTTGGACCCCTGAAGATTGTAATGATGATGTATGA

>Glyma13g30971.2   sequence type=CDS   gene model=Glyma13g30971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGCCGCCAGGTGTTTGCTGCGCTCCGCCGTCTCCCGAGCTGCCGGTGCGGCAAATCTGGCTGCCGGAGCTAGAACGAAGCCTGCACGATCTCCGTTTCGGCTCCCAAAGCAAACCTCAATCTCCAATCGCGTTTTCAGGTTACCGGTGGAAGCGAGTTTCTGCGTGGAATCGATGCTTCCTTATCACAGTGCTACTGCTTCTGCATTGCTGAATTCGATGCTCTCTGTGTCTCGCCACTCCTACGGTTGGACCCCTGAAGGGCAAGAGAAGACTAGATGA

>Glyma13g30971.3   sequence type=CDS   gene model=Glyma13g30971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGCCGCCAGGTGTTTGCTGCGCTCCGCCGTCTCCCGAGCTGCCGGTGCGGCAAATCTGGCTGCCGGAGCTAGAACGAAGCCTGCACGATCTCCGTTTCGGCTCCCAAAGCAAACCTCAATCTCCAATCGCGTTTTCAGGTTACCGGTGGAAGCGAGTTTCTGCGTGGAATCGATGCTTCCTTATCACAGTGCTACTGCTTCTGCATTGCTGAATTCGATGCTCTCTGTGTCTCGCCACTCCTACGGTTGGACCCCTGAAGGGTCGTGA

Predicted protein sequences of Glyma13g30971

Limit To All Plant Sequences

>Glyma13g30971.1   sequence type=predicted peptide   gene model=Glyma13g30971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAARCLLRSAVSRAAGAANLAAGARTKPARSPFRLPKQTSISNRVFRLPVEASFCVESMLPYHSATASALLNSMLSVSRHSYGWTPEDCNDDV*

>Glyma13g30971.2   sequence type=predicted peptide   gene model=Glyma13g30971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAARCLLRSAVSRAAGAANLAAGARTKPARSPFRLPKQTSISNRVFRLPVEASFCVESMLPYHSATASALLNSMLSVSRHSYGWTPEGQEKTR*

>Glyma13g30971.3   sequence type=predicted peptide   gene model=Glyma13g30971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAARCLLRSAVSRAAGAANLAAGARTKPARSPFRLPKQTSISNRVFRLPVEASFCVESMLPYHSATASALLNSMLSVSRHSYGWTPEGS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain