Report for Sequence Feature Glyma13g30950
Feature Type: gene_model
Chromosome: Gm13
Start: 33430581
stop: 33432307
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g30950
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G28400 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33850.1); Has 45374 Blast hits to 18870 proteins in 668 species: Archae - 72; Bacteria - 1460; Metazoa - 1191; Fungi - 1038; Plants - 174; Viruses - 64; Other Eukaryotes - 41375 (source: NCBI BLink). | chr1:9972732-9973739 REV
SoyBase E_val: 6.00E-13 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1M206 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M206_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q01197 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein E6 n=2 Tax=Gossypium hirsutum RepID=E6_GOSHI
SoyBase E_val: 2.00E-14 ISS
Expression Patterns of Glyma13g30950
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g30950
Paralog Evidence Comments
Glyma15g08413 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g30950 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g236100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g30950
Coding sequences of Glyma13g30950
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g30950.1 sequence type=CDS gene model=Glyma13g30950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTCCCTCATCAAACTACATTTCTTTCCTTTTCCTCACCACCCTTTTGTTTGCTCTTCAAATCAGTGCAAGAGACAGCCAGTTCTTCAGCAAAGTCACCCATTTTGACAAAAACAGTGTCAAAGAGACAGAACTTCCCAACAAAGAAGCACCAGAAGTGAACAAGCCAGAGCAACAACCACCTTTCATTCCGGAGACTGAAAACAGCTATGGCCTATATGGTCATCATGATGAGTATAACCAAGTCCCTTCCACCACCACCAACCCCACTTCTTACCACCCCTACAAGACCGAGTTTGAGAACTCCAACAACAAGTATTACAACAATGATGCCTATAACACAAGGTTCTCCGAAACCGGTTACAACAACAACAAGGATTCTTATGAGGGTAACCAATATGAGTTAAGTGACACAAAGTACACAGAAGAAGAATACAACAACAACAACAACAACAAGTATCACAACTCCTATCAGAACAACAACCAGAAGTACTACAACAACGATGCTGCCAATGGCATATACTCCTACAACAACAACAACAATTACAATGCTAACAATAACAGGTACAATACTTACAACAACAACAATGCCGTTAACGGGTACAATGGTGAGAGGCAAGGAATGAGTGACACAAGGTTTTTGGAGGGTGGAAAATACTTTCATGACGTTGCCGCCGAGAAGTACAATCCAACAAACTATGGTGACTCATCAAGGGAAGTGAACACTAACAACTGGTACAACAACAGAGGTGGCAACTACAACGGGAACCAGAACCAGCAGGAGTTTGAAGATGAACATGAGAACTTCGAGCCATGA
Predicted protein sequences of Glyma13g30950
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g30950.1 sequence type=predicted peptide gene model=Glyma13g30950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPSSNYISFLFLTTLLFALQISARDSQFFSKVTHFDKNSVKETELPNKEAPEVNKPEQQPPFIPETENSYGLYGHHDEYNQVPSTTTNPTSYHPYKTEFENSNNKYYNNDAYNTRFSETGYNNNKDSYEGNQYELSDTKYTEEEYNNNNNNKYHNSYQNNNQKYYNNDAANGIYSYNNNNNYNANNNRYNTYNNNNAVNGYNGERQGMSDTRFLEGGKYFHDVAAEKYNPTNYGDSSREVNTNNWYNNRGGNYNGNQNQQEFEDEHENFEP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
