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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14600 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:4707518-4709022 FORWARD LENGTH=318 | SoyBase | E_val: 7.00E-167 | ISS |
| GO:0030488 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016429 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tRNA (adenine-N1-)-methyltransferase activity | SoyBase | N/A | ISS |
| KOG2915 | KOG | tRNA(1-methyladenosine) methyltransferase, subunit GCD14 | JGI | ISS | |
| PTHR12133 | Panther | UNCHARACTERIZED METHYLTRANSFERASE | JGI | ISS | |
| PF08704 | PFAM | tRNA methyltransferase complex GCD14 subunit | JGI | ISS | |
| UniRef100_A2Q516 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SAM (And some other nucleotide) binding motif n=1 Tax=Medicago truncatula RepID=A2Q516_MEDTR | SoyBase | E_val: 7.00E-177 | ISS |
| UniRef100_I1M1Y9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1Y9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g30820 not represented in the dataset |
Glyma13g30820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g08460 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g234900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g30820.3 sequence type=transcript gene model=Glyma13g30820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTAAAATCCCTTCGTTTAGCACCGTGCCGTCATTGGCCCAAGTAACACAGAGATAGCTTCGAAACTCTGATCGGATACGCAAGAGTTTTCAATTTGACGAACGAAGATTAAAAAAAAAAAAAACAAGCCTGTTCAACTCAAAGACCTGGTTCGTTTTCAGCTTCCATTCATTCTCTCTTTTCTTGTTGCTGAATGTGCTCCAATTTTTGTGACTCATTTGGTTCTTCTTCTACACTAATTTTTTGGATGTCAATGTTCTGTTTCGAAAAAGAGAGATTTTGTGCTAGAAACACACTTCGCACTATCATTATAACGGCAACGGTGTAACAGATAATTGTTCCTTTTGTCTGAGCTGAAAGACTTGAGGACTTCTAAAGATGTTGGCCCTTCATCCTGCAAAAAAGTTATCATTTAATCGACCAATTAATAATGGGGATTTGGTTATTGTTTATGAAAGGCATGACATTATGAAGGCTGTAACAGTGTCTGAGGGATCAGTCCTGCAAAATCGTTTTGGTGTTTTTAAACATTCGGAATGGATAGGAAAGCCGTTTGGGTCTAAAGTAGTCAGCAGTAAGGGTGGCTTTGTGTACTTGTTAGCTCCCACACCAGAATTGTGGACTCTGGTATTGAACCACAGGACTCAGATTCTGTACATTGCAGATATTAGCTTTGTTATCATGTACTTGGAGATTGTTCCTGGTTGCGTGGTTCTTGAATCTGGAACTGGAAGTGGATCGTTGACTACTTCGCTTGCAAGGGCAGTTGCTCCTTCAGGACACGTCTATACGTTTGATTTCCATGAACAAAGGGCTGCATCAGCTAGGGCTGATTTTGAGAGGACAGGTCTAAGCAGCTTAGTCACTGTGCAAGTTAGGGACATTCAGGGTGAAGGATTTCCTGATACCTTTACTGGCATGGCTGACTCTGTATTTCTGGATCTACCTCAACCTTGGCTTGTCATCCCTTCTGCTGCAAAAGTATTAAGACATGATGGCACACTGTGCTCTTTCTCTCCTTGTATCGAACAAGTACAGCGAACATGTGAAACACTCCGAACCTGCTTCACAGATATAAGGACATTTGAGGTACTCTTACGCACATATGAAGTTCGGGAAGAGAAAATGCAAAGCTTATGTGGGGATGGCAATGGTTCTCTTCCTAGCAAGAGGAGACAATGCTCTGATGGAAGCTATGTACTAAGCAGCAGCAGTCCATCTATTTCTTCTGTCATGGCTAGACCTTGTGGTGAAGCTCGAGGTCACACAGGCTATTTGACATTTGCAAGAGTTAAATCACTCTCATGAAGAGTGCTATCATGTCCATCACATTTGTGAATCTCCTTTCGGTTTGAACCTCATGCCATAGGTTATTTTTGTTTGTTACAATACAGCATGCCTATGATTCATACCTTGGTCCATGAAGCAAAGCCCGCCTCTTTTTTGCAGATTAGTAATCATCGATAAATATTTTGTGCTTCTTCATTTTATTTACAAATATTTAGAGGGATCAAGCTTCTTAACTTAGTTGCATTGGTTCAACAAAGTGGTTAGAGATCTCTGTCATCATTATTGAGATTGATTTTCTGTCTCCCATTACGTTGAGAATTTCATGTTTGAACATTGCCTTCTATAATTTTATACATTATGCTGAAAGCAAAAACTGAACACTTTGAAATTCGCTTTG >Glyma13g30820.4 sequence type=transcript gene model=Glyma13g30820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTAAAATCCCTTCGTTTAGCACCGTGCCGTCATTGGCCCAAGTAACACAGAGATAGCTTCGAAACTCTGATCGGATACGCAAGAGTTTTCAATTTGACGAACGAAGATTAAAAAAAAAAAAAACAAGCCTGTTCAACTCAAAGACCTGATAATTGTTCCTTTTGTCTGAGCTGAAAGACTTGAGGACTTCTAAAGATGTTGGCCCTTCATCCTGCAAAAAAGTTATCATTTAATCGACCAATTAATAATGGGGATTTGGTTATTGTTTATGAAAGGCATGACATTATGAAGGCTGTAACAGTGTCTGAGGGATCAGTCCTGCAAAATCGTTTTGGTGTTTTTAAACATTCGGAATGGATAGGAAAGCCGTTTGGGTCTAAAGTAGTCAGCAGTAAGGGTGGCTTTGTGTACTTGTTAGCTCCCACACCAGAATTGTGGACTCTGGTATTGAACCACAGGACTCAGATTCTGTACATTGCAGATATTAGCTTTGTTATCATGTACTTGGAGATTGTTCCTGGTTGCGTGGTTCTTGAATCTGGAACTGGAAGTGGATCGTTGACTACTTCGCTTGCAAGGGCAGTTGCTCCTTCAGGACACGTCTATACGTTTGATTTCCATGAACAAAGGGCTGCATCAGCTAGGGCTGATTTTGAGAGGACAGGTCTAAGCAGCTTAGTCACTGTGCAAGTTAGGGACATTCAGGGTGAAGGATTTCCTGATACCTTTACTGGCATGGCTGACTCTGTATTTCTGGATCTACCTCAACCTTGGCTTGTCATCCCTTCTGCTGCAAAAGTATTAAGACATGATGGCACACTGTGCTCTTTCTCTCCTTGTATCGAACAAGTACAGCGAACATGTGAAACACTCCGAACCTGCTTCACAGATATAAGGACATTTGAGGTACTCTTACGCACATATGAAGTTCGGGAAGAGAAAATGCAAAGCTTATGTGGGGATGGCAATGGTTCTCTTCCTAGCAAGAGGAGACAATGCTCTGATGGAAGCTATGTACTAAGCAGCAGCAGTCCATCTATTTCTTCTGTCATGGCTAGACCTTGTGGTGAAGCTCGAGGTCACACAGGCTATTTGACATTTGCAAGAGTTAAATCACTCTCATGAAGAGTGCTATCATGTCCATCACATTTGTGAATCTCCTTTCGGTTTGAACCTCATGCCATAGGTTATTTTTGTTTGTTACAATACAGCATGCCTATGATTCATACCTTGGTCCATGAAGCAAAGCCCGCCTCTTTTTTGCAGATTAGTAATCATCGATAAATATTTTGTGCTTCTTCATTTTATTTACAAATATTTAGAGGGATCAAGCTTCTTAACTTAGTTGCATTGGTTCAACAAAGTGGTTAGAGATCTCTGTCATCATTATTGAGATTGATTTTCTGTCTCCCATTACGTTGAGAATTTCATGTTTGAACATTGCCTTCTATAATTTTATACATTATGCTGAAAGCAAAAACTGAACACTTTGAAATTCGCTTTG
>Glyma13g30820.2 sequence type=CDS gene model=Glyma13g30820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGGCCCTTCATCCTGCAAAAAAGTTATCATTTAATCGACCAATTAATAATGGGGATTTGGTTATTGTTTATGAAAGGCATGACATTATGAAGGCTGTAACAGTGTCTGAGGGATCAGTCCTGCAAAATCGTTTTGGTGTTTTTAAACATTCGGAATGGATAGGAAAGCCGTTTGGGTCTAAAGTAGTCAGCAGTAAGGGTGGCTTTGTGTACTTGTTAGCTCCCACACCAGAATTGTGGACTCTGGTATTGAACCACAGGACTCAGATTCTGTACATTGCAGATATTAGCTTTGTTATCATGTACTTGGAGATTGTTCCTGGTTGCGTGGTTCTTGAATCTGGAACTGGAAGTGGATCGTTGACTACTTCGCTTGCAAGGGCAGTTGCTCCTTCAGGACACGTCTATACGTTTGATTTCCATGAACAAAGGGCTGCATCAGCTAGGGCTGATTTTGAGAGGACAGGTCTAAGCAGCTTAGTCACTGTGCAAGTTAGGGACATTCAGGGTGAAGGATTTCCTGATACCTTTACTGGCATGGCTGACTCTGTATTTCTGGATCTACCTCAACCTTGGCTTGTCATCCCTTCTGCTGCAAAAGTATTAAGACATGATGGCACACTGTGCTCTTTCTCTCCTTGTATCGAACAAGTACAGCGAACATGTGAAACACTCCGAACCTGCTTCACAGGTAGTTCTGTGTTTTACTTTTTCTTCTTTCTGCCCCCCTCTATATTTTCTGATTTTCCTAATGTGTGCTATTTCTTTCTCTTTAATGTAATATATATGCAACTTGCATAA >Glyma13g30820.3 sequence type=CDS gene model=Glyma13g30820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGGCCCTTCATCCTGCAAAAAAGTTATCATTTAATCGACCAATTAATAATGGGGATTTGGTTATTGTTTATGAAAGGCATGACATTATGAAGGCTGTAACAGTGTCTGAGGGATCAGTCCTGCAAAATCGTTTTGGTGTTTTTAAACATTCGGAATGGATAGGAAAGCCGTTTGGGTCTAAAGTAGTCAGCAGTAAGGGTGGCTTTGTGTACTTGTTAGCTCCCACACCAGAATTGTGGACTCTGGTATTGAACCACAGGACTCAGATTCTGTACATTGCAGATATTAGCTTTGTTATCATGTACTTGGAGATTGTTCCTGGTTGCGTGGTTCTTGAATCTGGAACTGGAAGTGGATCGTTGACTACTTCGCTTGCAAGGGCAGTTGCTCCTTCAGGACACGTCTATACGTTTGATTTCCATGAACAAAGGGCTGCATCAGCTAGGGCTGATTTTGAGAGGACAGGTCTAAGCAGCTTAGTCACTGTGCAAGTTAGGGACATTCAGGGTGAAGGATTTCCTGATACCTTTACTGGCATGGCTGACTCTGTATTTCTGGATCTACCTCAACCTTGGCTTGTCATCCCTTCTGCTGCAAAAGTATTAAGACATGATGGCACACTGTGCTCTTTCTCTCCTTGTATCGAACAAGTACAGCGAACATGTGAAACACTCCGAACCTGCTTCACAGATATAAGGACATTTGAGGTACTCTTACGCACATATGAAGTTCGGGAAGAGAAAATGCAAAGCTTATGTGGGGATGGCAATGGTTCTCTTCCTAGCAAGAGGAGACAATGCTCTGATGGAAGCTATGTACTAAGCAGCAGCAGTCCATCTATTTCTTCTGTCATGGCTAGACCTTGTGGTGAAGCTCGAGGTCACACAGGCTATTTGACATTTGCAAGAGTTAAATCACTCTCATGA >Glyma13g30820.4 sequence type=CDS gene model=Glyma13g30820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGGCCCTTCATCCTGCAAAAAAGTTATCATTTAATCGACCAATTAATAATGGGGATTTGGTTATTGTTTATGAAAGGCATGACATTATGAAGGCTGTAACAGTGTCTGAGGGATCAGTCCTGCAAAATCGTTTTGGTGTTTTTAAACATTCGGAATGGATAGGAAAGCCGTTTGGGTCTAAAGTAGTCAGCAGTAAGGGTGGCTTTGTGTACTTGTTAGCTCCCACACCAGAATTGTGGACTCTGGTATTGAACCACAGGACTCAGATTCTGTACATTGCAGATATTAGCTTTGTTATCATGTACTTGGAGATTGTTCCTGGTTGCGTGGTTCTTGAATCTGGAACTGGAAGTGGATCGTTGACTACTTCGCTTGCAAGGGCAGTTGCTCCTTCAGGACACGTCTATACGTTTGATTTCCATGAACAAAGGGCTGCATCAGCTAGGGCTGATTTTGAGAGGACAGGTCTAAGCAGCTTAGTCACTGTGCAAGTTAGGGACATTCAGGGTGAAGGATTTCCTGATACCTTTACTGGCATGGCTGACTCTGTATTTCTGGATCTACCTCAACCTTGGCTTGTCATCCCTTCTGCTGCAAAAGTATTAAGACATGATGGCACACTGTGCTCTTTCTCTCCTTGTATCGAACAAGTACAGCGAACATGTGAAACACTCCGAACCTGCTTCACAGATATAAGGACATTTGAGGTACTCTTACGCACATATGAAGTTCGGGAAGAGAAAATGCAAAGCTTATGTGGGGATGGCAATGGTTCTCTTCCTAGCAAGAGGAGACAATGCTCTGATGGAAGCTATGTACTAAGCAGCAGCAGTCCATCTATTTCTTCTGTCATGGCTAGACCTTGTGGTGAAGCTCGAGGTCACACAGGCTATTTGACATTTGCAAGAGTTAAATCACTCTCATGA
>Glyma13g30820.2 sequence type=predicted peptide gene model=Glyma13g30820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLALHPAKKLSFNRPINNGDLVIVYERHDIMKAVTVSEGSVLQNRFGVFKHSEWIGKPFGSKVVSSKGGFVYLLAPTPELWTLVLNHRTQILYIADISFVIMYLEIVPGCVVLESGTGSGSLTTSLARAVAPSGHVYTFDFHEQRAASARADFERTGLSSLVTVQVRDIQGEGFPDTFTGMADSVFLDLPQPWLVIPSAAKVLRHDGTLCSFSPCIEQVQRTCETLRTCFTGSSVFYFFFFLPPSIFSDFPNVCYFFLFNVIYMQLA* >Glyma13g30820.3 sequence type=predicted peptide gene model=Glyma13g30820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLALHPAKKLSFNRPINNGDLVIVYERHDIMKAVTVSEGSVLQNRFGVFKHSEWIGKPFGSKVVSSKGGFVYLLAPTPELWTLVLNHRTQILYIADISFVIMYLEIVPGCVVLESGTGSGSLTTSLARAVAPSGHVYTFDFHEQRAASARADFERTGLSSLVTVQVRDIQGEGFPDTFTGMADSVFLDLPQPWLVIPSAAKVLRHDGTLCSFSPCIEQVQRTCETLRTCFTDIRTFEVLLRTYEVREEKMQSLCGDGNGSLPSKRRQCSDGSYVLSSSSPSISSVMARPCGEARGHTGYLTFARVKSLS* >Glyma13g30820.4 sequence type=predicted peptide gene model=Glyma13g30820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLALHPAKKLSFNRPINNGDLVIVYERHDIMKAVTVSEGSVLQNRFGVFKHSEWIGKPFGSKVVSSKGGFVYLLAPTPELWTLVLNHRTQILYIADISFVIMYLEIVPGCVVLESGTGSGSLTTSLARAVAPSGHVYTFDFHEQRAASARADFERTGLSSLVTVQVRDIQGEGFPDTFTGMADSVFLDLPQPWLVIPSAAKVLRHDGTLCSFSPCIEQVQRTCETLRTCFTDIRTFEVLLRTYEVREEKMQSLCGDGNGSLPSKRRQCSDGSYVLSSSSPSISSVMARPCGEARGHTGYLTFARVKSLS*
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