SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G54960 | AT | Annotation by Michelle Graham. TAIR10: pyruvate decarboxylase-2 | chr5:22310858-22312681 REVERSE LENGTH=607 | SoyBase | E_val: 0 | ISS |
| GO:0001666 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hypoxia | SoyBase | N/A | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0010498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004737 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyruvate decarboxylase activity | SoyBase | N/A | ISS |
| GO:0016831 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carboxy-lyase activity | SoyBase | N/A | ISS |
| GO:0030976 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: thiamine pyrophosphate binding | SoyBase | N/A | ISS |
| KOG1184 | KOG | Thiamine pyrophosphate-requiring enzyme | JGI | ISS | |
| PTHR18968 | Panther | THIAMINE PYROPHOSPHATE ENZYMES | JGI | ISS | |
| PTHR18968:SF4 | Panther | 2-SUCCINYL-6-HYDROXY-2,4-CYCLOHEXADIENE-1-CARBOXYLATE SYNTHASE | JGI | ISS | |
| PF00205 | PFAM | Thiamine pyrophosphate enzyme, central domain | JGI | ISS | |
| PF02775 | PFAM | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | JGI | ISS | |
| PF02776 | PFAM | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | JGI | ISS | |
| UniRef100_I1M1V8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1V8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_P51850 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pyruvate decarboxylase isozyme 1 n=1 Tax=Pisum sativum RepID=PDC1_PEA | SoyBase | E_val: 0 | ISS |
|
Glyma13g30490 not represented in the dataset |
Glyma13g30490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g231700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g30490.2 sequence type=transcript gene model=Glyma13g30490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCAAACAAATAGCACATGGTTTTGGAAACCCCTACATAAACCCCTCCCTGTCGCTCCATCCACAGTCACAGTCACAGTCACAGACACACGTCAAAATATCCAATCATTTCACATGGAAAGTGCCACTCAAGTCGGTGCGGCGGCTCAGCCCAGCTCAGCTTCAGCGTCGGTGATTCCCTCCGCCTTCGACGGCACCCTGGGCCGTCACCTTGCTCGCCGCCTCGCCGAGACCGGTGTCAGGGACGTCTTCTCCGTTCCCGGCGACTTCAACTTGACGCTCCTCGACCACCTCATCGCCGAGCCGAGTCTCAACCTCGTCGGCTGCTGCAACGAGCTCAACGCCGGCTACGCCGCCGACGGCTACGCGCGCGCCAAGGGCGTCGGCGCCTGCGTGGTCACCTTCACCGTCGGCGGACTCAGCGTCCTCAACGCCATCGCCGGAGCTTACAGCGAGAATTTGCCAGTGATTTGCATCGTCGGAGGACCCAATTCCAACGACTACGGCACCAACCGGATCCTCCACCACACCATCGGTTTACCCGATTTCACCCAAGAGCTTCGGTGCTTTCAGGCCATCACGTGTTTTCAGGCAGTGGTGAATAACTTGGACGATGCGCATGAACTTATTGACACTGCAATTTCTACTGCTTTGAAGGAAAGCAAGCCTGTTTATATCAGCATAAGTTGTAACCTTCCTGGAATTCCTCATCCAACTTTTGCTAGAGACCCCGTGCCATTCTTTCTTGCACCTAAGGTAAGCAATCAAGAAGGATTAGAAGCAGCAGTGGAAGCAACGGCTGCTTTACTGAACAACGCTGTGAAGCCAGTGATTGTGGGTGGGCCAAAACTAAGGGTAGCAAAGGCACAAAAGGCCTTTCTGGAGTTTGCAGAAGCAAGTGGATATCCAATAGCAGTTATGCCGTCCGGGAAGGGACTAGTACCAGAGCATCATCCACATTTCATTGGGACATACTGGGGTGCTGTCAGCTCTAGCTTTTGTGGGGAAATTGTGGAGTCTGCTGATGCATATGTTTTTGTTGGCCCCATCTTCAATGACTATAGCTCCGTTGGATACTCGTTGTTGATAAAGAAGGAGAAAGCCATAATAGTGCAGCCTAATCGGGTAACCATTGGCAATGGTCCTTCCTTGGGCTGGGTTTTCATGGCTGATTTCTTAACTGCATTGGCTAAAAAAGTGAAGACCAACACCGCAGCTGTGGAGAATTACCGGCGTATCTATGTCCCACCAGGCATTCCTCTGAGGCGAGAGAAGGATGAACCACTTAGAGTTAATGTTCTATTCAAGCACATTCAAGAACTGCTAAGCGGAGATACTGCTGTAATAGCTGAAACTGGAGACTCATGGTTCAACTGTCAGAAGCTCCATCTGCCTGAGAATTGCGGGTATGAATTCCAGATGCAGTATGGATCCATTGGTTGGTCAGTAGGTGCTACTCTTGGATATGCACAGGCTGCAACAGACAAGCGTGTAATTGCTTGCATTGGTGATGGCAGTTTTCAGGTTAGTAAGATTATAAGAATACAAACTATCTGTGTCCAGAATATTAAAGACAATATACATATGTTTTTCTTTTTTATTCATTGTTCACCTAGTATGAAATTTTGTCCAAAATGGAAGCTCCACCATAAACCATGGCTGAATGGCTATAATCACACGTGCTAACAACTTGATGGATGCTACTATATTATATATTTTTTTAAGAGAAACTAAGCTTGGGGAAGAGTTATTTCATTAAGAAATAAAGTATATCCCTGTAGAGATATGATAGTCCTTGCATCAATCAAGTTAGTTACATCAGTAGGTAATCAGGTGAATAAATTATTAGAAATTAAATTTGAAAGTGAGGTGTAAGTTCACCAAAATGCATTAGCACCATTTGGATATTATACTTTATAAGAATATGTTGACTTCATTTGATTCAAGTACCTGACCTCAACTAATAGGGAAATGATTTAGTTGCTGCCGATGTTGAAATTAAAAGTGAATTCCTTTGAAGTAAGGTTATCTCAACCATTATTACACATCCAAGACGTTTGTATAATGAGGAGCATCAACAGAAAGTAAACATGTTCATTATTTTATTTTCTGCCTGATGAATGAATCACATGGACTTATAGTTCCCCTTATTTAGGTAACAGCACAGGATATTTCAACAATGATTCGCTGTGGACAAAAGACCATCATCTTTCTCATCAATAATGGAGGTTATACAATTGAAGTTGAGATTCATGATGGTCCATACAATGTGATAAAGAATTGGGACTACACTCGCTTTGTGGACGCTATCCATAATGGGCAAGGCAAATGCTGGACTGCCAAGGTACGTACAGAGGATGATCTGACTGAAGCAATTGCAAAAGCTACTGGACCACAGAAAGATTCACTATGTTTTATAGAAGTTTTTGTACACAAGGATGACACCAGCAAAGAATTGCTGGAATGGGGATCTCGTGTTGCTGCTGCTAACAGTCGTCCTCCTAATCCTCAATAGAAAATCATTTCCTAATTATTGGCCTGTTTTGTGTATTTTGTTGAATAGAGTTCCACTACTGGATATTTACAAGAGAAAAACGACAAAAATGAAAAATAAGTTGAAATAAATGTTTGCTTTTCCAGATTTGTATCTGGTCTCGTGTTGCTGACTTGTTGACTTGTTGTAATCATGAACTATTATTGCTTTGTAATAATGTCTTGTATAATGGAATTGTTAATGAATCAAAGAGGATATAGCCATTGTATGTAAATTCATGTGCTGATAACACGATTGATATTGAGAAAGACTATGATGCCTATTCCACAAAATGGGAAC
>Glyma13g30490.1 sequence type=CDS gene model=Glyma13g30490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAGTGCCACTCAAGTCGGTGCGGCGGCTCAGCCCAGCTCAGCTTCAGCGTCGGTGATTCCCTCCGCCTTCGACGGCACCCTGGGCCGTCACCTTGCTCGCCGCCTCGCCGAGACCGGTGTCAGGGACGTCTTCTCCGTTCCCGGCGACTTCAACTTGACGCTCCTCGACCACCTCATCGCCGAGCCGAGTCTCAACCTCGTCGGCTGCTGCAACGAGCTCAACGCCGGCTACGCCGCCGACGGCTACGCGCGCGCCAAGGGCGTCGGCGCCTGCGTGGTCACCTTCACCGTCGGCGGACTCAGCGTCCTCAACGCCATCGCCGGAGCTTACAGCGAGAATTTGCCAGTGATTTGCATCGTCGGAGGACCCAATTCCAACGACTACGGCACCAACCGGATCCTCCACCACACCATCGGTTTACCCGATTTCACCCAAGAGCTTCGGTGCTTTCAGGCCATCACGTGTTTTCAGGCAGTGGTGAATAACTTGGACGATGCGCATGAACTTATTGACACTGCAATTTCTACTGCTTTGAAGGAAAGCAAGCCTGTTTATATCAGCATAAGTTGTAACCTTCCTGGAATTCCTCATCCAACTTTTGCTAGAGACCCCGTGCCATTCTTTCTTGCACCTAAGGTAAGCAATCAAGAAGGATTAGAAGCAGCAGTGGAAGCAACGGCTGCTTTACTGAACAACGCTGTGAAGCCAGTGATTGTGGGTGGGCCAAAACTAAGGGTAGCAAAGGCACAAAAGGCCTTTCTGGAGTTTGCAGAAGCAAGTGGATATCCAATAGCAGTTATGCCGTCCGGGAAGGGACTAGTACCAGAGCATCATCCACATTTCATTGGGACATACTGGGGTGCTGTCAGCTCTAGCTTTTGTGGGGAAATTGTGGAGTCTGCTGATGCATATGTTTTTGTTGGCCCCATCTTCAATGACTATAGCTCCGTTGGATACTCGTTGTTGATAAAGAAGGAGAAAGCCATAATAGTGCAGCCTAATCGGGTAACCATTGGCAATGGTCCTTCCTTGGGCTGGGTTTTCATGGCTGATTTCTTAACTGCATTGGCTAAAAAAGTGAAGACCAACACCGCAGCTGTGGAGAATTACCGGCGTATCTATGTCCCACCAGGCATTCCTCTGAGGCGAGAGAAGGATGAACCACTTAGAGTTAATGTTCTATTCAAGCACATTCAAGAACTGCTAAGCGGAGATACTGCTGTAATAGCTGAAACTGGAGACTCATGGTTCAACTGTCAGAAGCTCCATCTGCCTGAGAATTGCGGGTATGAATTCCAGATGCAGTATGGATCCATTGGTTGGTCAGTAGGTGCTACTCTTGGATATGCACAGGCTGCAACAGACAAGCGTGTAATTGCTTGCATTGGTGATGGCAGTTTTCAGGTAACAGCACAGGATATTTCAACAATGATTCGCTGTGGACAAAAGACCATCATCTTTCTCATCAATAATGGAGGTTATACAATTGAAGTTGAGATTCATGATGGTCCATACAATGTGATAAAGAATTGGGACTACACTCGCTTTGTGGACGCTATCCATAATGGGCAAGGCAAATGCTGGACTGCCAAGGTACGTACAGAGGATGATCTGACTGAAGCAATTGCAAAAGCTACTGGACCACAGAAAGATTCACTATGTTTTATAGAAGTTTTTGTACACAAGGATGACACCAGCAAAGAATTGCTGGAATGGGGATCTCGTGTTGCTGCTGCTAACAGTCGTCCTCCTAATCCTCAATAG >Glyma13g30490.2 sequence type=CDS gene model=Glyma13g30490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAGTGCCACTCAAGTCGGTGCGGCGGCTCAGCCCAGCTCAGCTTCAGCGTCGGTGATTCCCTCCGCCTTCGACGGCACCCTGGGCCGTCACCTTGCTCGCCGCCTCGCCGAGACCGGTGTCAGGGACGTCTTCTCCGTTCCCGGCGACTTCAACTTGACGCTCCTCGACCACCTCATCGCCGAGCCGAGTCTCAACCTCGTCGGCTGCTGCAACGAGCTCAACGCCGGCTACGCCGCCGACGGCTACGCGCGCGCCAAGGGCGTCGGCGCCTGCGTGGTCACCTTCACCGTCGGCGGACTCAGCGTCCTCAACGCCATCGCCGGAGCTTACAGCGAGAATTTGCCAGTGATTTGCATCGTCGGAGGACCCAATTCCAACGACTACGGCACCAACCGGATCCTCCACCACACCATCGGTTTACCCGATTTCACCCAAGAGCTTCGGTGCTTTCAGGCCATCACGTGTTTTCAGGCAGTGGTGAATAACTTGGACGATGCGCATGAACTTATTGACACTGCAATTTCTACTGCTTTGAAGGAAAGCAAGCCTGTTTATATCAGCATAAGTTGTAACCTTCCTGGAATTCCTCATCCAACTTTTGCTAGAGACCCCGTGCCATTCTTTCTTGCACCTAAGGTAAGCAATCAAGAAGGATTAGAAGCAGCAGTGGAAGCAACGGCTGCTTTACTGAACAACGCTGTGAAGCCAGTGATTGTGGGTGGGCCAAAACTAAGGGTAGCAAAGGCACAAAAGGCCTTTCTGGAGTTTGCAGAAGCAAGTGGATATCCAATAGCAGTTATGCCGTCCGGGAAGGGACTAGTACCAGAGCATCATCCACATTTCATTGGGACATACTGGGGTGCTGTCAGCTCTAGCTTTTGTGGGGAAATTGTGGAGTCTGCTGATGCATATGTTTTTGTTGGCCCCATCTTCAATGACTATAGCTCCGTTGGATACTCGTTGTTGATAAAGAAGGAGAAAGCCATAATAGTGCAGCCTAATCGGGTAACCATTGGCAATGGTCCTTCCTTGGGCTGGGTTTTCATGGCTGATTTCTTAACTGCATTGGCTAAAAAAGTGAAGACCAACACCGCAGCTGTGGAGAATTACCGGCGTATCTATGTCCCACCAGGCATTCCTCTGAGGCGAGAGAAGGATGAACCACTTAGAGTTAATGTTCTATTCAAGCACATTCAAGAACTGCTAAGCGGAGATACTGCTGTAATAGCTGAAACTGGAGACTCATGGTTCAACTGTCAGAAGCTCCATCTGCCTGAGAATTGCGGGTATGAATTCCAGATGCAGTATGGATCCATTGGTTGGTCAGTAGGTGCTACTCTTGGATATGCACAGGCTGCAACAGACAAGCGTGTAATTGCTTGCATTGGTGATGGCAGTTTTCAGGTTAGTAAGATTATAAGAATACAAACTATCTGTGTCCAGAATATTAAAGACAATATACATATGTTTTTCTTTTTTATTCATTGTTCACCTAGTATGAAATTTTGTCCAAAATGGAAGCTCCACCATAAACCATGGCTGAATGGCTATAATCACACGTGCTAA
>Glyma13g30490.1 sequence type=predicted peptide gene model=Glyma13g30490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESATQVGAAAQPSSASASVIPSAFDGTLGRHLARRLAETGVRDVFSVPGDFNLTLLDHLIAEPSLNLVGCCNELNAGYAADGYARAKGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCFQAVVNNLDDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQEGLEAAVEATAALLNNAVKPVIVGGPKLRVAKAQKAFLEFAEASGYPIAVMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPNRVTIGNGPSLGWVFMADFLTALAKKVKTNTAAVENYRRIYVPPGIPLRREKDEPLRVNVLFKHIQELLSGDTAVIAETGDSWFNCQKLHLPENCGYEFQMQYGSIGWSVGATLGYAQAATDKRVIACIGDGSFQVTAQDISTMIRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWDYTRFVDAIHNGQGKCWTAKVRTEDDLTEAIAKATGPQKDSLCFIEVFVHKDDTSKELLEWGSRVAAANSRPPNPQ* >Glyma13g30490.2 sequence type=predicted peptide gene model=Glyma13g30490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESATQVGAAAQPSSASASVIPSAFDGTLGRHLARRLAETGVRDVFSVPGDFNLTLLDHLIAEPSLNLVGCCNELNAGYAADGYARAKGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCFQAVVNNLDDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQEGLEAAVEATAALLNNAVKPVIVGGPKLRVAKAQKAFLEFAEASGYPIAVMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPNRVTIGNGPSLGWVFMADFLTALAKKVKTNTAAVENYRRIYVPPGIPLRREKDEPLRVNVLFKHIQELLSGDTAVIAETGDSWFNCQKLHLPENCGYEFQMQYGSIGWSVGATLGYAQAATDKRVIACIGDGSFQVSKIIRIQTICVQNIKDNIHMFFFFIHCSPSMKFCPKWKLHHKPWLNGYNHTC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
