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Report for Sequence Feature Glyma13g30463

Feature Type:gene_model
Chromosome:Gm13
Start:33098064
stop:33102062
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g30463
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G28600AT Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10051228-10053073 REVERSE LENGTH=393 SoyBaseE_val: 2.00E-140ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0016788GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds SoyBaseN/AISS
PTHR22835Panther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN JGI ISS
PTHR22835:SF39Panther LATERAL SIGNALING TARGET PROTEIN 2 JGI ISS
PF00657PFAM GDSL-like Lipase/Acylhydrolase JGI ISS
UniRef100_G7IKA5UniRef Annotation by Michelle Graham. Most informative UniRef hit: GDSL esterase/lipase n=1 Tax=Medicago truncatula RepID=G7IKA5_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233AC6BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233AC6B related cluster n=1 Tax=unknown RepID=UPI000233AC6B SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g30463
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g30463 not represented in the dataset
Glyma13g30463 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g30463
ParalogEvidenceComments
Glyma15g08730 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g30463 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g231500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g30463
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma13g30463
>Glyma13g30463.2   sequence type=transcript   gene model=Glyma13g30463   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATAAACCGATATTCTAAAATCGGCAACACTAAAACCAAACAAGCTATATGTAATAGTCCTAAAACTTGTATGTAGGAGTTAATCAGTTATTCCATAAATTACACATTTGCCAGTACATAAAGGAGAGACTGAGATTTTATGAATCGAACAAGAACAAATTAATTGATATTTGCAAATGTGTAGTAGCGGACAATGAGGTCAATTTGTGAAGAGCGATGGATTGCAATTGTTGGTTTTGTGGTAGTTTTTTCTTCAGCAACCATATTGGCAGCATGCCCTTACAAATCAATCTTCAGCTTCGGTGATTCATTTGCAGACACTGGCAACTTGTATTTTAGCTCCCACCCACCTTCCCATCACTGCTTTTTCCCTCCCTACGGTCAAACCTTCTTTCACCGGGTCACCGGACGCTGCTCCGATGGCCGCCTCATAATCGATTTCATCGCTGAGTCACTGGGACTTCCACTGCTGAAACCATATTTGGGAATGAAGAAGAAGAATGTTGTTGGGGGAGCAAATTTTGCTGTTATTGGAGCCACGGCGTTAGACTTAAGCTTCTTTGAAGAGAGGGGCATTTCTATCCCTACCCATTATTCTTTGACAGTTCAATTGAATTGGTTCAAGGAACTGCTTCCTTCTCTCTGCAATTCTTCCGCAGACTGCCATGAAGTAGTTGGAAACTCATTATTTCTTATGGGTGAAATTGGAGGAAATGATTTCAACTATCTTTTATTTCAACAAAGGAGCATAGCAGAGGTTAAAACATTTGTGCCGTATGTGATCAAGGCAATAACTTCAGCTGTCAACGAGTTGATTGGTTTAGGGGCTCGCACGCTCATAGTTCCTGGGAATATACCATTGGGATGTAGTATAACGTATTTAACAATCTATGAAACCATGGATAAGAACCAATATGACCAATATGGGTGCTTGAAGTGGTTAAATAAGTTCGCCGAATATTACAACCAAAAGCTCCAAAGTGAATTACATAGGCTTCAGGGACTTCACTCTCATGCTAATATCATTTATGCTGATTATTACAATGCCATATTGTCATTATATCGTGATCCCACAATGTTTGGTTTTACTAATCTTAAAACCTGTTGTGGAATGGGAGGTCCATATAATTACAACGCATCAGCAGATTGTGGGGATCCAGGAGTGAATGCTTGTGATGATCCTTCTAAGCATATTGGATGGGATGGTGTTCACCTGACTGAGGCTGCATATAGAATAATTGCTCAAGGTTTAATAAAAGGACCATATTGTCTCCCCCGATTTAATACCTTGTGCTTGATAAACACTAGTTATGGCCATTTCAATAGCTAAAATGTATCTTTGATGAAATGAAGTGAAATAAATTCAATGTAGCTAACACTATAACATGATTTGCATAAGACGCCCATATCTTTCAATAATAATATAACTGTTAGTTTCATTTCTATTTATAAAAG
Coding sequences of Glyma13g30463
>Glyma13g30463.1   sequence type=CDS   gene model=Glyma13g30463   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTCAATTTGTGAAGAGCGATGGATTGCAATTGTTGGTTTTGTGGTAGTTTTTTCTTCAGCAACCATATTGGCAGCATGCCCTTACAAATCAATCTTCAGCTTCGGTGATTCATTTGCAGACACTGGCAACTTGTATTTTAGCTCCCACCCACCTTCCCATCACTGCTTTTTCCCTCCCTACGGTCAAACCTTCTTTCACCGGGTCACCGGACGCTGCTCCGATGGCCGCCTCATAATCGATTTCATCGCTGAGTCACTGGGACTTCCACTGCTGAAACCATATTTGGGAATGAAGAAGAAGAATGTTGTTGGGGGAGCAAATTTTGCTGTTATTGGAGCCACGGCGTTAGACTTAAGCTTCTTTGAAGAGAGGGGCATTTCTATCCCTACCCATTATTCTTTGACAGTTCAATTGAATTGGTTCAAGGAACTGCTTCCTTCTCTCTGCAATTCTTCCGCAGACTGCCATGAAGTAGTTGGAAACTCATTATTTCTTATGGGTGAAATTGGAGGAAATGATTTCAACTATCTTTTATTTCAACAAAGGAGCATAGCAGAGGTTAAAACATTTGTGCCGTATGTGATCAAGGCAATAACTTCAGCTGTCAACGAGTTGATTGGTTTAGGGGCTCGCACGCTCATAGTTCCTGGGAATATACCATTGGGATGTAGTATAACGTATTTAACAATCTATGAAACCATGGATAAGAACCAATATGACCAATATGGGTGCTTGAAGTGGTTAAATAAGTTCGCCGAATATTACAACCAAAAGCTCCAAAGTGAATTACATAGGCTTCAGGGACTTCACTCTCATGCTAATATCATTTATGCTGATTATTACAATGCCATATTGTCATTATATCGTGATCCCACAATGTTTGGTTTTACTAATCTTAAAACCTGTTGTGGAATGGGAGGTCCATATAATTACAACGCATCAGCAGATTGTGGGGATCCAGGAGTGAATGCTTGTGATGATCCTTCTAAGCATATTGGATGGGATGGTGTTCACCTGACTGAGGCTGCATATAGAATAATTGCTCAAGGTTTAATAAAAGGACCATATTGTCTCCCCCGATTTAATACCTTGTGCTTGATAAACACTAGTTATGGCCATTTCAATAGCTAA

>Glyma13g30463.2   sequence type=CDS   gene model=Glyma13g30463   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTCAATTTGTGAAGAGCGATGGATTGCAATTGTTGGTTTTGTGGTAGTTTTTTCTTCAGCAACCATATTGGCAGCATGCCCTTACAAATCAATCTTCAGCTTCGGTGATTCATTTGCAGACACTGGCAACTTGTATTTTAGCTCCCACCCACCTTCCCATCACTGCTTTTTCCCTCCCTACGGTCAAACCTTCTTTCACCGGGTCACCGGACGCTGCTCCGATGGCCGCCTCATAATCGATTTCATCGCTGAGTCACTGGGACTTCCACTGCTGAAACCATATTTGGGAATGAAGAAGAAGAATGTTGTTGGGGGAGCAAATTTTGCTGTTATTGGAGCCACGGCGTTAGACTTAAGCTTCTTTGAAGAGAGGGGCATTTCTATCCCTACCCATTATTCTTTGACAGTTCAATTGAATTGGTTCAAGGAACTGCTTCCTTCTCTCTGCAATTCTTCCGCAGACTGCCATGAAGTAGTTGGAAACTCATTATTTCTTATGGGTGAAATTGGAGGAAATGATTTCAACTATCTTTTATTTCAACAAAGGAGCATAGCAGAGGTTAAAACATTTGTGCCGTATGTGATCAAGGCAATAACTTCAGCTGTCAACGAGTTGATTGGTTTAGGGGCTCGCACGCTCATAGTTCCTGGGAATATACCATTGGGATGTAGTATAACGTATTTAACAATCTATGAAACCATGGATAAGAACCAATATGACCAATATGGGTGCTTGAAGTGGTTAAATAAGTTCGCCGAATATTACAACCAAAAGCTCCAAAGTGAATTACATAGGCTTCAGGGACTTCACTCTCATGCTAATATCATTTATGCTGATTATTACAATGCCATATTGTCATTATATCGTGATCCCACAATGTTTGGTTTTACTAATCTTAAAACCTGTTGTGGAATGGGAGGTCCATATAATTACAACGCATCAGCAGATTGTGGGGATCCAGGAGTGAATGCTTGTGATGATCCTTCTAAGCATATTGGATGGGATGGTGTTCACCTGACTGAGGCTGCATATAGAATAATTGCTCAAGGTTTAATAAAAGGACCATATTGTCTCCCCCGATTTAATACCTTGTGCTTGATAAACACTAGTTATGGCCATTTCAATAGCTAA
Predicted protein sequences of Glyma13g30463
>Glyma13g30463.1   sequence type=predicted peptide   gene model=Glyma13g30463   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSICEERWIAIVGFVVVFSSATILAACPYKSIFSFGDSFADTGNLYFSSHPPSHHCFFPPYGQTFFHRVTGRCSDGRLIIDFIAESLGLPLLKPYLGMKKKNVVGGANFAVIGATALDLSFFEERGISIPTHYSLTVQLNWFKELLPSLCNSSADCHEVVGNSLFLMGEIGGNDFNYLLFQQRSIAEVKTFVPYVIKAITSAVNELIGLGARTLIVPGNIPLGCSITYLTIYETMDKNQYDQYGCLKWLNKFAEYYNQKLQSELHRLQGLHSHANIIYADYYNAILSLYRDPTMFGFTNLKTCCGMGGPYNYNASADCGDPGVNACDDPSKHIGWDGVHLTEAAYRIIAQGLIKGPYCLPRFNTLCLINTSYGHFNS*

>Glyma13g30463.2   sequence type=predicted peptide   gene model=Glyma13g30463   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSICEERWIAIVGFVVVFSSATILAACPYKSIFSFGDSFADTGNLYFSSHPPSHHCFFPPYGQTFFHRVTGRCSDGRLIIDFIAESLGLPLLKPYLGMKKKNVVGGANFAVIGATALDLSFFEERGISIPTHYSLTVQLNWFKELLPSLCNSSADCHEVVGNSLFLMGEIGGNDFNYLLFQQRSIAEVKTFVPYVIKAITSAVNELIGLGARTLIVPGNIPLGCSITYLTIYETMDKNQYDQYGCLKWLNKFAEYYNQKLQSELHRLQGLHSHANIIYADYYNAILSLYRDPTMFGFTNLKTCCGMGGPYNYNASADCGDPGVNACDDPSKHIGWDGVHLTEAAYRIIAQGLIKGPYCLPRFNTLCLINTSYGHFNS*






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