SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G28600 | AT | Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10051228-10053073 REVERSE LENGTH=393 | SoyBase | E_val: 2.00E-140 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0016788 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds | SoyBase | N/A | ISS |
| PTHR22835 | Panther | ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN | JGI | ISS | |
| PTHR22835:SF39 | Panther | LATERAL SIGNALING TARGET PROTEIN 2 | JGI | ISS | |
| PF00657 | PFAM | GDSL-like Lipase/Acylhydrolase | JGI | ISS | |
| UniRef100_G7IKA5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GDSL esterase/lipase n=1 Tax=Medicago truncatula RepID=G7IKA5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233AC6B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AC6B related cluster n=1 Tax=unknown RepID=UPI000233AC6B | SoyBase | E_val: 0 | ISS |
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Glyma13g30463 not represented in the dataset |
Glyma13g30463 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g08730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g231500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g30463.2 sequence type=transcript gene model=Glyma13g30463 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATAAACCGATATTCTAAAATCGGCAACACTAAAACCAAACAAGCTATATGTAATAGTCCTAAAACTTGTATGTAGGAGTTAATCAGTTATTCCATAAATTACACATTTGCCAGTACATAAAGGAGAGACTGAGATTTTATGAATCGAACAAGAACAAATTAATTGATATTTGCAAATGTGTAGTAGCGGACAATGAGGTCAATTTGTGAAGAGCGATGGATTGCAATTGTTGGTTTTGTGGTAGTTTTTTCTTCAGCAACCATATTGGCAGCATGCCCTTACAAATCAATCTTCAGCTTCGGTGATTCATTTGCAGACACTGGCAACTTGTATTTTAGCTCCCACCCACCTTCCCATCACTGCTTTTTCCCTCCCTACGGTCAAACCTTCTTTCACCGGGTCACCGGACGCTGCTCCGATGGCCGCCTCATAATCGATTTCATCGCTGAGTCACTGGGACTTCCACTGCTGAAACCATATTTGGGAATGAAGAAGAAGAATGTTGTTGGGGGAGCAAATTTTGCTGTTATTGGAGCCACGGCGTTAGACTTAAGCTTCTTTGAAGAGAGGGGCATTTCTATCCCTACCCATTATTCTTTGACAGTTCAATTGAATTGGTTCAAGGAACTGCTTCCTTCTCTCTGCAATTCTTCCGCAGACTGCCATGAAGTAGTTGGAAACTCATTATTTCTTATGGGTGAAATTGGAGGAAATGATTTCAACTATCTTTTATTTCAACAAAGGAGCATAGCAGAGGTTAAAACATTTGTGCCGTATGTGATCAAGGCAATAACTTCAGCTGTCAACGAGTTGATTGGTTTAGGGGCTCGCACGCTCATAGTTCCTGGGAATATACCATTGGGATGTAGTATAACGTATTTAACAATCTATGAAACCATGGATAAGAACCAATATGACCAATATGGGTGCTTGAAGTGGTTAAATAAGTTCGCCGAATATTACAACCAAAAGCTCCAAAGTGAATTACATAGGCTTCAGGGACTTCACTCTCATGCTAATATCATTTATGCTGATTATTACAATGCCATATTGTCATTATATCGTGATCCCACAATGTTTGGTTTTACTAATCTTAAAACCTGTTGTGGAATGGGAGGTCCATATAATTACAACGCATCAGCAGATTGTGGGGATCCAGGAGTGAATGCTTGTGATGATCCTTCTAAGCATATTGGATGGGATGGTGTTCACCTGACTGAGGCTGCATATAGAATAATTGCTCAAGGTTTAATAAAAGGACCATATTGTCTCCCCCGATTTAATACCTTGTGCTTGATAAACACTAGTTATGGCCATTTCAATAGCTAAAATGTATCTTTGATGAAATGAAGTGAAATAAATTCAATGTAGCTAACACTATAACATGATTTGCATAAGACGCCCATATCTTTCAATAATAATATAACTGTTAGTTTCATTTCTATTTATAAAAG
>Glyma13g30463.1 sequence type=CDS gene model=Glyma13g30463 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGTCAATTTGTGAAGAGCGATGGATTGCAATTGTTGGTTTTGTGGTAGTTTTTTCTTCAGCAACCATATTGGCAGCATGCCCTTACAAATCAATCTTCAGCTTCGGTGATTCATTTGCAGACACTGGCAACTTGTATTTTAGCTCCCACCCACCTTCCCATCACTGCTTTTTCCCTCCCTACGGTCAAACCTTCTTTCACCGGGTCACCGGACGCTGCTCCGATGGCCGCCTCATAATCGATTTCATCGCTGAGTCACTGGGACTTCCACTGCTGAAACCATATTTGGGAATGAAGAAGAAGAATGTTGTTGGGGGAGCAAATTTTGCTGTTATTGGAGCCACGGCGTTAGACTTAAGCTTCTTTGAAGAGAGGGGCATTTCTATCCCTACCCATTATTCTTTGACAGTTCAATTGAATTGGTTCAAGGAACTGCTTCCTTCTCTCTGCAATTCTTCCGCAGACTGCCATGAAGTAGTTGGAAACTCATTATTTCTTATGGGTGAAATTGGAGGAAATGATTTCAACTATCTTTTATTTCAACAAAGGAGCATAGCAGAGGTTAAAACATTTGTGCCGTATGTGATCAAGGCAATAACTTCAGCTGTCAACGAGTTGATTGGTTTAGGGGCTCGCACGCTCATAGTTCCTGGGAATATACCATTGGGATGTAGTATAACGTATTTAACAATCTATGAAACCATGGATAAGAACCAATATGACCAATATGGGTGCTTGAAGTGGTTAAATAAGTTCGCCGAATATTACAACCAAAAGCTCCAAAGTGAATTACATAGGCTTCAGGGACTTCACTCTCATGCTAATATCATTTATGCTGATTATTACAATGCCATATTGTCATTATATCGTGATCCCACAATGTTTGGTTTTACTAATCTTAAAACCTGTTGTGGAATGGGAGGTCCATATAATTACAACGCATCAGCAGATTGTGGGGATCCAGGAGTGAATGCTTGTGATGATCCTTCTAAGCATATTGGATGGGATGGTGTTCACCTGACTGAGGCTGCATATAGAATAATTGCTCAAGGTTTAATAAAAGGACCATATTGTCTCCCCCGATTTAATACCTTGTGCTTGATAAACACTAGTTATGGCCATTTCAATAGCTAA >Glyma13g30463.2 sequence type=CDS gene model=Glyma13g30463 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGTCAATTTGTGAAGAGCGATGGATTGCAATTGTTGGTTTTGTGGTAGTTTTTTCTTCAGCAACCATATTGGCAGCATGCCCTTACAAATCAATCTTCAGCTTCGGTGATTCATTTGCAGACACTGGCAACTTGTATTTTAGCTCCCACCCACCTTCCCATCACTGCTTTTTCCCTCCCTACGGTCAAACCTTCTTTCACCGGGTCACCGGACGCTGCTCCGATGGCCGCCTCATAATCGATTTCATCGCTGAGTCACTGGGACTTCCACTGCTGAAACCATATTTGGGAATGAAGAAGAAGAATGTTGTTGGGGGAGCAAATTTTGCTGTTATTGGAGCCACGGCGTTAGACTTAAGCTTCTTTGAAGAGAGGGGCATTTCTATCCCTACCCATTATTCTTTGACAGTTCAATTGAATTGGTTCAAGGAACTGCTTCCTTCTCTCTGCAATTCTTCCGCAGACTGCCATGAAGTAGTTGGAAACTCATTATTTCTTATGGGTGAAATTGGAGGAAATGATTTCAACTATCTTTTATTTCAACAAAGGAGCATAGCAGAGGTTAAAACATTTGTGCCGTATGTGATCAAGGCAATAACTTCAGCTGTCAACGAGTTGATTGGTTTAGGGGCTCGCACGCTCATAGTTCCTGGGAATATACCATTGGGATGTAGTATAACGTATTTAACAATCTATGAAACCATGGATAAGAACCAATATGACCAATATGGGTGCTTGAAGTGGTTAAATAAGTTCGCCGAATATTACAACCAAAAGCTCCAAAGTGAATTACATAGGCTTCAGGGACTTCACTCTCATGCTAATATCATTTATGCTGATTATTACAATGCCATATTGTCATTATATCGTGATCCCACAATGTTTGGTTTTACTAATCTTAAAACCTGTTGTGGAATGGGAGGTCCATATAATTACAACGCATCAGCAGATTGTGGGGATCCAGGAGTGAATGCTTGTGATGATCCTTCTAAGCATATTGGATGGGATGGTGTTCACCTGACTGAGGCTGCATATAGAATAATTGCTCAAGGTTTAATAAAAGGACCATATTGTCTCCCCCGATTTAATACCTTGTGCTTGATAAACACTAGTTATGGCCATTTCAATAGCTAA
>Glyma13g30463.1 sequence type=predicted peptide gene model=Glyma13g30463 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRSICEERWIAIVGFVVVFSSATILAACPYKSIFSFGDSFADTGNLYFSSHPPSHHCFFPPYGQTFFHRVTGRCSDGRLIIDFIAESLGLPLLKPYLGMKKKNVVGGANFAVIGATALDLSFFEERGISIPTHYSLTVQLNWFKELLPSLCNSSADCHEVVGNSLFLMGEIGGNDFNYLLFQQRSIAEVKTFVPYVIKAITSAVNELIGLGARTLIVPGNIPLGCSITYLTIYETMDKNQYDQYGCLKWLNKFAEYYNQKLQSELHRLQGLHSHANIIYADYYNAILSLYRDPTMFGFTNLKTCCGMGGPYNYNASADCGDPGVNACDDPSKHIGWDGVHLTEAAYRIIAQGLIKGPYCLPRFNTLCLINTSYGHFNS* >Glyma13g30463.2 sequence type=predicted peptide gene model=Glyma13g30463 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRSICEERWIAIVGFVVVFSSATILAACPYKSIFSFGDSFADTGNLYFSSHPPSHHCFFPPYGQTFFHRVTGRCSDGRLIIDFIAESLGLPLLKPYLGMKKKNVVGGANFAVIGATALDLSFFEERGISIPTHYSLTVQLNWFKELLPSLCNSSADCHEVVGNSLFLMGEIGGNDFNYLLFQQRSIAEVKTFVPYVIKAITSAVNELIGLGARTLIVPGNIPLGCSITYLTIYETMDKNQYDQYGCLKWLNKFAEYYNQKLQSELHRLQGLHSHANIIYADYYNAILSLYRDPTMFGFTNLKTCCGMGGPYNYNASADCGDPGVNACDDPSKHIGWDGVHLTEAAYRIIAQGLIKGPYCLPRFNTLCLINTSYGHFNS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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