Glyma13g30450 - SoyBase

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Report for Sequence Feature Glyma13g30450

Feature Type:	gene_model
Chromosome:	Gm13
Start:	33087161
stop:	33089560
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g30450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45910	AT	Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein \| chr5:18620420-18622264 REVERSE LENGTH=372	SoyBase	E_val: 2.00E-135	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
PTHR22835	Panther	ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR22835:SF39	Panther	LATERAL SIGNALING TARGET PROTEIN 2	JGI		ISS
PF00657	PFAM	GDSL-like Lipase/Acylhydrolase	JGI		ISS
UniRef100_G7IKB1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GDSL esterase/lipase n=1 Tax=Medicago truncatula RepID=G7IKB1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M1V3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1V3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g30450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g30450

Paralog	Evidence	Comments
Glyma15g08770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g30450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g231300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g30450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g30450

Limit To All Plant Sequences

>Glyma13g30450.1   sequence type=CDS   gene model=Glyma13g30450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGTGTTCTTGTTCAACCACCTTCTGATCTTCATCTTCATAGAGAAAGTATGAAGATCTATATTTTGCTAGTCATTATAACTTCCTTCACATTTGGTTTCATTGAGAAAGTTGTTTCAAATCCAAGTTCTCGTCCATATACGGCAATTTTCAACTTTGGTGACTCTCTAAGTGACACCGGCAATTTCCTTGCATCTGGTGCCATTTTATTCCCAGTTATCGGAAAGCTTCCTTATGGTCAAACCTTTTTTAAACGTGCAACCGGTCGTTGCTCAGATGGACGACTAATGATTGATTTTATAGCTGAGGCATATGACTTGCCATATTTACCACCCTATCTGGCACTTACCAAAGACCAATACATTCAACGTGGAGTGAATTTTGCCGTTGCCGGAGCCACAGCACTTGATGCAAAATTCTTCATCGAAGCAGGACTTGCAAAATATCTATGGACAAATAATTCATTGAACATTCAGCTTGGCTGGTTTAAGAAACTCAAACCCTCACTTTGCACCACTAAACAAGATTGTGATAGCTACTTCAAACGCTCTCTCTTTCTGGTGGGGGAGATAGGTGGTAATGATTATAACTATGCTGCCATTGCTGGAAATGTTACTCAACTTCAATCTACTGTTCCTCCAGTCGTTGAAGCAATAACAATGGCCATCAATGGATTGATAGCTGAAGGAGCAAGGGAGCTGTTGGTGCCGGGGAATTTTCCAATTGGATGCTCTGCGCTATACCTAACTTTATTTAGAAGCGAGAACAAGGAGGACTATGATGAAAGTGGATGCTTGAAAACTTTCAATGGTTTTGCAGAGTACCATAACAGGGAGCTCAAGCTAGCCTTGGAGACACTAAGGAAAAAGAATCCTCACGCAAGGATATTGTATGCTGACTATTATGGTGCTGCCAAACGTTTCTTCCATGCACCAGGACACCATGGGTTTACTAATGGAGCGTTGAGAGCATGCTGTGGTGGAGGTGGACCCTTCAATTTCAACATTTCCGCAAGGTGTGGTCACACAGGTTCAAAAGCATGTGCAGATCCGTCCACATATGCAAATTGGGATGGAATTCATTTGACAGAAGCAGCTTATAGGTACATCGCCAAAGGTCTAATTTACGGTCCATTCTCATATCCTCCCCTCAAGACCTCTCCCAACAAGATAGCCTAG

Predicted protein sequences of Glyma13g30450

Limit To All Plant Sequences

>Glyma13g30450.1   sequence type=predicted peptide   gene model=Glyma13g30450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRVLVQPPSDLHLHRESMKIYILLVIITSFTFGFIEKVVSNPSSRPYTAIFNFGDSLSDTGNFLASGAILFPVIGKLPYGQTFFKRATGRCSDGRLMIDFIAEAYDLPYLPPYLALTKDQYIQRGVNFAVAGATALDAKFFIEAGLAKYLWTNNSLNIQLGWFKKLKPSLCTTKQDCDSYFKRSLFLVGEIGGNDYNYAAIAGNVTQLQSTVPPVVEAITMAINGLIAEGARELLVPGNFPIGCSALYLTLFRSENKEDYDESGCLKTFNGFAEYHNRELKLALETLRKKNPHARILYADYYGAAKRFFHAPGHHGFTNGALRACCGGGGPFNFNISARCGHTGSKACADPSTYANWDGIHLTEAAYRYIAKGLIYGPFSYPPLKTSPNKIA*

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