Glyma13g30360 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g30360

Feature Type:	gene_model
Chromosome:	Gm13
Start:	33022345
stop:	33025850
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g30360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G27430	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr2:11729914-11733170 REVERSE LENGTH=438	SoyBase	E_val: 2.00E-145	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
PTHR23315	Panther	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	JGI		ISS
PTHR23315:SF38	Panther	ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN	JGI		ISS
UniRef100_G7ILI8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein n=1 Tax=Medicago truncatula RepID=G7ILI8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B1F5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B1F5 related cluster n=1 Tax=unknown RepID=UPI000233B1F5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g30360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g30360

Paralog	Evidence	Comments
Glyma15g08830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g30360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g230400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g30360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g30360

Limit To All Plant Sequences

>Glyma13g30360.3   sequence type=transcript   gene model=Glyma13g30360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGCAATGCTACTTAGTATATAATATTTTAGTTCAAACATAGTCACAACTGCATAAATCATTATATTAGCACCTTGTGTCCCTTGTGAAGTTCAGAAGGTTTCTCCAATCCAAAGCAACCAAAAAGCGTTATGACCCCTCTGATCGGTTTGACACAGCTAAGAGCAAAGTTGAACACAACAACAAGGTTGAAAATCTTGAAACAGTTCAAGTTATGGAGAAGCATAAAGAGGAGGAGGAAGAGTCTGTGATCATGTTGCAGAGAACTGTGAAGATGCTTCACTTTGGAAGCTGGGAAGAGAAGGAGGTGGCAGCAAAGGAGATTGAAAAGTTAGCCAAGGAAGATGTTAAGGTTAGAAAATTGATAACAGAACTTGGGGTGGTGCCGGTGTTGGTATCTATGGTGGCGTCGCCGGTGGCTAGCCGCCGGCGAGCAGGGTTGACGGCGTTGATCCACCTAGCTGATGGAACCTACACGAACAAGGCTTTGATAGTGGAGGCAGGAATATTGTCCAAGCTTCCTAAGACAATTGACCTTGTAGATGAATCAACAACAAGTAAATTGGTAGAGTTGCTTTTGTCATTGTCATCTCTAGCAAACACTCAATTCCCTCTTGCCATATTAGACTTTCTACCGTTACTTAGAAACATTCTTGAGAAAGGCTCAAGTTTTGACACCAAAAATTCATGTTTAGGTGCCTTACATAACCTATCAACTGTGTTAGAGAATGCATGCCCTTTGGTTTCAAGTGGGGTGGTCCCTATCCTCTTGGAAGTATCCTCAATAAAAGAAATTTCAGAGAAAGCACTTGCCACTCTAGGGAACTTATCAGTGACTTTGATGGGAAAGAAAACAATAGAGAACAATTCAATGGTGCCAGAAACCTTTATTGAGATCTTGTCATGGGAAGACAAACCCAAATGCCAAGAGTTGTCAGTGTATATTTTGATGATTCTTGCACATCAAAGCTCATTGCAAAGAAAGAAAATGGCACAGGCAGGAATTGTTCCGGTGCTTCTTGAAGTGGTTTTATTGGGGAGTAATTTGGCTCAGAAGAGAGCAATGAAACTATTGCAATGGTTTAAGGATGAAAGGCAAACGAAAATGGGTCCACATTCTGGTCCACAAACACCAAGATTTGCAATGGGGTCACCTGTGAATCAAAGAGAAGCAAAAGAAGGGAAGAGATTGATGAAGAGTTTGGTGAAACAAAGTTTAAATAGGAATATGGAAATAATAACGCAGAGGGCAAATGCAGCAGGGGAGTCTTCTAAATTGAAGTCTTTGATTATTAGCACTAGTTCCAAGAGTTTGCCTTACTAAGGGGTTATTCTCTTAACCTTTTTTTTTTCTCCCCTTAAAATTTGAAATTGACTTGGTTTTAGCAGTTTAGGCTTTGGTGATATGTGCTATTGTTTGGCACCAGCCATTGACGGGCATCACTTTATGAGAACAAAACGTGAAAAATGTCACCTTGACATTTCTTTCTACAACATTGTAAATGTTGACAGATATAAATGAAAAGTTTCCAATCACAGGAACTCGTTGAATATTAGA

Coding sequences of Glyma13g30360

Limit To All Plant Sequences

>Glyma13g30360.2   sequence type=CDS   gene model=Glyma13g30360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCCCTGTGCTCCCCCTGTACTTTAAAGTTCACGGAGCTCTTCAAATAGTTTCATTGATTCGTTTTCTCTCCCTTCTCCCTCTGGTCTCTCTCTGTCTCCAAAGTCAGAAACAGAAACTAAAATTGTATAAGAACCAAACCCCAAACACTCACTTTTCCAAAATTTCAATATCTTGCTTTGTTTTCTCCTTCCTCTCAAGCATGTCTACTCCTTCATCATCATCATCTTCTTCTTCTATTTGGGTGTTGTCTAACATAAAACTTCAGTTCTTTGGCCGCATCAGAAGGTTTCTCCAATCCAAAGCAACCAAAAAGCGTTATGACCCCTCTGATCGGTTTGACACAGCTAAGAGCAAAGTTGAACACAACAACAAGGTTGAAAATCTTGAAACAGTTCAAGTTATGGAGAAGCATAAAGAGGAGGAGGAAGAGTCTGTGATCATGTTGCAGAGAACTGTGAAGATGCTTCACTTTGGAAGCTGGGAAGAGAAGGAGGTGGCAGCAAAGGAGATTGAAAAGTTAGCCAAGGAAGATGTTAAGGTTAGAAAATTGATAACAGAACTTGGGGTGGTGCCGGTGTTGGTATCTATGGTGGCGTCGCCGGTGGCTAGCCGCCGGCGAGCAGGGTTGACGGCGTTGATCCACCTAGCTGATGGAACCTACACGAACAAGGCTTTGATAGTGGAGGCAGGAATATTGTCCAAGCTTCCTAAGACAATTGACCTTGTAGATGAATCAACAACAAGTAAATTGGTAGAGTTGCTTTTGTCATTGTCATCTCTAGCAAACACTCAATTCCCTCTTGCCATATTAGACTTTCTACCGTTACTTAGAAACATTCTTGAGAAAGGCTCAAGTTTTGACACCAAAAATTCATGTTTAGGTGCCTTACATAACCTATCAACTGTGTTAGAGAATGCATGCCCTTTGGTTTCAAGTGGGGTGGTCCCTATCCTCTTGGAAGTATCCTCAATAAAAGAAATTTCAGAGAAAGCACTTGCCACTCTAGGGAACTTATCAGTGACTTTGATGGGAAAGAAAACAATAGAGAACAATTCAATGGTGCCAGAAACCTTTATTGAGATCTTGTCATGGGAAGACAAACCCAAATGCCAAGAGTTGTCAGTGTATATTTTGATGATTCTTGCACATCAAAGCTCATTGCAAAGAAAGAAAATGGCACAGGCAGGAATTGTTCCGGTGCTTCTTGAAGTGGTTTTATTGGGGAGTAATTTGGCTCAGAAGAGAGCAATGAAACTATTGCAATGGTTTAAGGATGAAAGGCAAACGAAAATGGGTCCACATTCTGGTCCACAAACACCAAGATTTGCAATGGGGTCACCTGTGAATCAAAGAGAAGCAAAAGAAGGGAAGAGATTGATGAAGAGTTTGGTGAAACAAAGTTTAAATAGGAATATGGAAATAATAACGCAGAGGGCAAATGCAGCAGGGGAGTCTTCTAAATTGAAGTCTTTGATTATTAGCACTAGTTCCAAGAGTTTGCCTTACTAA

>Glyma13g30360.3   sequence type=CDS   gene model=Glyma13g30360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGCATAAAGAGGAGGAGGAAGAGTCTGTGATCATGTTGCAGAGAACTGTGAAGATGCTTCACTTTGGAAGCTGGGAAGAGAAGGAGGTGGCAGCAAAGGAGATTGAAAAGTTAGCCAAGGAAGATGTTAAGGTTAGAAAATTGATAACAGAACTTGGGGTGGTGCCGGTGTTGGTATCTATGGTGGCGTCGCCGGTGGCTAGCCGCCGGCGAGCAGGGTTGACGGCGTTGATCCACCTAGCTGATGGAACCTACACGAACAAGGCTTTGATAGTGGAGGCAGGAATATTGTCCAAGCTTCCTAAGACAATTGACCTTGTAGATGAATCAACAACAAGTAAATTGGTAGAGTTGCTTTTGTCATTGTCATCTCTAGCAAACACTCAATTCCCTCTTGCCATATTAGACTTTCTACCGTTACTTAGAAACATTCTTGAGAAAGGCTCAAGTTTTGACACCAAAAATTCATGTTTAGGTGCCTTACATAACCTATCAACTGTGTTAGAGAATGCATGCCCTTTGGTTTCAAGTGGGGTGGTCCCTATCCTCTTGGAAGTATCCTCAATAAAAGAAATTTCAGAGAAAGCACTTGCCACTCTAGGGAACTTATCAGTGACTTTGATGGGAAAGAAAACAATAGAGAACAATTCAATGGTGCCAGAAACCTTTATTGAGATCTTGTCATGGGAAGACAAACCCAAATGCCAAGAGTTGTCAGTGTATATTTTGATGATTCTTGCACATCAAAGCTCATTGCAAAGAAAGAAAATGGCACAGGCAGGAATTGTTCCGGTGCTTCTTGAAGTGGTTTTATTGGGGAGTAATTTGGCTCAGAAGAGAGCAATGAAACTATTGCAATGGTTTAAGGATGAAAGGCAAACGAAAATGGGTCCACATTCTGGTCCACAAACACCAAGATTTGCAATGGGGTCACCTGTGAATCAAAGAGAAGCAAAAGAAGGGAAGAGATTGATGAAGAGTTTGGTGAAACAAAGTTTAAATAGGAATATGGAAATAATAACGCAGAGGGCAAATGCAGCAGGGGAGTCTTCTAAATTGAAGTCTTTGATTATTAGCACTAGTTCCAAGAGTTTGCCTTACTAA

Predicted protein sequences of Glyma13g30360

Limit To All Plant Sequences

>Glyma13g30360.2   sequence type=predicted peptide   gene model=Glyma13g30360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCPVLPLYFKVHGALQIVSLIRFLSLLPLVSLCLQSQKQKLKLYKNQTPNTHFSKISISCFVFSFLSSMSTPSSSSSSSSIWVLSNIKLQFFGRIRRFLQSKATKKRYDPSDRFDTAKSKVEHNNKVENLETVQVMEKHKEEEEESVIMLQRTVKMLHFGSWEEKEVAAKEIEKLAKEDVKVRKLITELGVVPVLVSMVASPVASRRRAGLTALIHLADGTYTNKALIVEAGILSKLPKTIDLVDESTTSKLVELLLSLSSLANTQFPLAILDFLPLLRNILEKGSSFDTKNSCLGALHNLSTVLENACPLVSSGVVPILLEVSSIKEISEKALATLGNLSVTLMGKKTIENNSMVPETFIEILSWEDKPKCQELSVYILMILAHQSSLQRKKMAQAGIVPVLLEVVLLGSNLAQKRAMKLLQWFKDERQTKMGPHSGPQTPRFAMGSPVNQREAKEGKRLMKSLVKQSLNRNMEIITQRANAAGESSKLKSLIISTSSKSLPY*

>Glyma13g30360.3   sequence type=predicted peptide   gene model=Glyma13g30360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKHKEEEEESVIMLQRTVKMLHFGSWEEKEVAAKEIEKLAKEDVKVRKLITELGVVPVLVSMVASPVASRRRAGLTALIHLADGTYTNKALIVEAGILSKLPKTIDLVDESTTSKLVELLLSLSSLANTQFPLAILDFLPLLRNILEKGSSFDTKNSCLGALHNLSTVLENACPLVSSGVVPILLEVSSIKEISEKALATLGNLSVTLMGKKTIENNSMVPETFIEILSWEDKPKCQELSVYILMILAHQSSLQRKKMAQAGIVPVLLEVVLLGSNLAQKRAMKLLQWFKDERQTKMGPHSGPQTPRFAMGSPVNQREAKEGKRLMKSLVKQSLNRNMEIITQRANAAGESSKLKSLIISTSSKSLPY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain