Glyma13g30340 - SoyBase

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Report for Sequence Feature Glyma13g30340

Feature Type:	gene_model
Chromosome:	Gm13
Start:	33013616
stop:	33015931
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g30340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29140	AT	Annotation by Michelle Graham. TAIR10: Pollen Ole e 1 allergen and extensin family protein \| chr1:10179029-10179811 FORWARD LENGTH=171	SoyBase	E_val: 2.00E-53	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF01190	PFAM	Pollen proteins Ole e I like	JGI		ISS
UniRef100_I1M1U3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M1U3_SOYBN	SoyBase	E_val: 4.00E-118	ISS
UniRef100_O49813	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Olee1-like protein n=1 Tax=Betula pendula RepID=OLEE1_BETPN	SoyBase	E_val: 4.00E-58	ISS

Expression Patterns of Glyma13g30340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g30340

Paralog	Evidence	Comments
Glyma15g08850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g30340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g230300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g30340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g30340

Limit To All Plant Sequences

>Glyma13g30340.3   sequence type=transcript   gene model=Glyma13g30340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTCACACATTAAACTGACCCATATTTTTATAAAAACGCAATCATCTCTTCCTTTAACACAGTAGTACATTCTCCTTTGAACCAAACCCTCATCCAAATTAACCAGCAAGCAAGCAGTATTTACAATGGCAAAAACTACAATCATCATCCTTGCCTCCACCCTTTGCTTCTTATCCTTCCTAGGCTCCGCTTATGCCCGAGACCGCTTCATGGTGGAGGGCACCGTTTACTGTGACACGTGTCGCGTCCAATTCCTCACCAAGTTGTCTGAGTTCCTTGAAGGAGCTACCGTGCGTGTGGTGTGTTCACAAGTTGATAATGCGAAGAACGTGACATTCAGCAAAGAGGCAGTGACAGATGCATCAGGGTCATACAAAGTGGAGGTGGACGGAGACCACGAAGAAGACACGTGTGAGGTTACCCTCTTGAAGAGTCCAAGAGCAGACTGCTCCGAGGTTGATCAAGAGTCTCACCTTCAGCAAGCTGCAAGGATCAGCATCACCAAAAACAATGGAATTGTGTCCCCAATTCGCCAGGCCAACCCTCTTGGTTTCCTCAAGAAGGATCGTCTCCCTGGCTGCTTGGACCTCCTCAAGGAGCTTGGAATCAATGAAGATGGCACCCTCATCGCTTGAACAACCACGTTAAAGGGATCGATATAGCCATATAGTGTAGGTGTAGCTCAAGTGATAGCTAGTGGAACGTGCAGTGGAAGAGGGTTTAAGGGCCCTAGCTACTATTACCACCTACCTCATTGTTATTCAAACCTCCCAAGACGTTGGCATTATTTTTGTTGCATATGTCCACCATGATACACAATTAATGGAAACAAGTTTATATTGTGTATGTGCATCAGATGCACAACTAAAATTTGTTTTTGTTGTGAGTATATATTATGCTAAACATACATAACAAAAACTTGTTTTCTTTGTTTTCTTTATGTAATTGGGAAAAACTATAATGGTGTGATTTAGTTTGTAATTGGGAAAATTTATAATTGTGTGTTTTAT

Coding sequences of Glyma13g30340

Limit To All Plant Sequences

>Glyma13g30340.2   sequence type=CDS   gene model=Glyma13g30340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAACTACAATCATCATCCTTGCCTCCACCCTTTGCTTCTTATCCTTCCTAGGCTCCGCTTATGCCCGAGACCGCTTCATGGTGGAGGGCACCGTTTACTGTGACACGTGTCGCGTCCAATTCCTCACCAAGTTGTCTGAGTTCCTTGAAGGAGCTACCGTGCGTGTGGTGTGTTCACAAGTTGATAATGCGAAGAACGTGACATTCAGCAAAGAGGCAGTGACAGATGCATCAGGGTCATACAAAGTGGAGGTGGACGGAGACCACGAAGAAGACACGTGTGAGGTTACCCTCTTGAAGAGTCCAAGAGCAGACTGCTCCGAGGTTGATCAAGAGTCTCACCTTCAGCAAGCTGCAAGGATCAGCATCACCAAAAACAATGGAATTGTGTCCCCAATTCGCCAGGCCAACCCTCTTGGTTTCCTCAAGAAGGATCGTCTCCCTGGCTGCTTGGACCTCCTCAAGGAGCTTGGAATCAATGAAGATGGCACCCTCATCGCTTGA

>Glyma13g30340.3   sequence type=CDS   gene model=Glyma13g30340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAACTACAATCATCATCCTTGCCTCCACCCTTTGCTTCTTATCCTTCCTAGGCTCCGCTTATGCCCGAGACCGCTTCATGGTGGAGGGCACCGTTTACTGTGACACGTGTCGCGTCCAATTCCTCACCAAGTTGTCTGAGTTCCTTGAAGGAGCTACCGTGCGTGTGGTGTGTTCACAAGTTGATAATGCGAAGAACGTGACATTCAGCAAAGAGGCAGTGACAGATGCATCAGGGTCATACAAAGTGGAGGTGGACGGAGACCACGAAGAAGACACGTGTGAGGTTACCCTCTTGAAGAGTCCAAGAGCAGACTGCTCCGAGGTTGATCAAGAGTCTCACCTTCAGCAAGCTGCAAGGATCAGCATCACCAAAAACAATGGAATTGTGTCCCCAATTCGCCAGGCCAACCCTCTTGGTTTCCTCAAGAAGGATCGTCTCCCTGGCTGCTTGGACCTCCTCAAGGAGCTTGGAATCAATGAAGATGGCACCCTCATCGCTTGA

Predicted protein sequences of Glyma13g30340

Limit To All Plant Sequences

>Glyma13g30340.2   sequence type=predicted peptide   gene model=Glyma13g30340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKTTIIILASTLCFLSFLGSAYARDRFMVEGTVYCDTCRVQFLTKLSEFLEGATVRVVCSQVDNAKNVTFSKEAVTDASGSYKVEVDGDHEEDTCEVTLLKSPRADCSEVDQESHLQQAARISITKNNGIVSPIRQANPLGFLKKDRLPGCLDLLKELGINEDGTLIA*

>Glyma13g30340.3   sequence type=predicted peptide   gene model=Glyma13g30340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKTTIIILASTLCFLSFLGSAYARDRFMVEGTVYCDTCRVQFLTKLSEFLEGATVRVVCSQVDNAKNVTFSKEAVTDASGSYKVEVDGDHEEDTCEVTLLKSPRADCSEVDQESHLQQAARISITKNNGIVSPIRQANPLGFLKKDRLPGCLDLLKELGINEDGTLIA*

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