Glyma13g30300 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g30300

Feature Type:	gene_model
Chromosome:	Gm13
Start:	32982869
stop:	32991636
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g30300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15900	AT	Annotation by Michelle Graham. TAIR10: TRICHOME BIREFRINGENCE-LIKE 19 \| chr5:5189524-5192070 REVERSE LENGTH=426	SoyBase	E_val: 2.00E-118	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR13533	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13533:SF3	Panther	gb def: unknown protein [takifugu rubripes]	JGI		ISS
PF03005	PFAM	Arabidopsis proteins of unknown function	JGI		ISS
UniRef100_I1M1U0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1M1U0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LFT0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein trichome birefringence-like 19 n=1 Tax=Arabidopsis thaliana RepID=Q9LFT0_ARATH	SoyBase	E_val: 1.00E-115	ISS

Expression Patterns of Glyma13g30300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g30300

Paralog	Evidence	Comments
Glyma15g08870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g30300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g229800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g30300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g30300

Limit To All Plant Sequences

>Glyma13g30300.1   sequence type=CDS   gene model=Glyma13g30300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGAAATATTCCCAAAGGTGCGTTCCTGTTACCCCTCACACTGTTTCTCATCTTGCTACTCCTTCCTCTGTTCAGAAACTTCATTCAACCATCTCCGAAGACATATGCCACCAACTTGGAAACCAAAGAAACAAGAAGATGCAACATATTTTCCGGAAACTGGGTTCCATATCCCAAAGAACCTTACTACAACAACGAAACCTGCCCTTTTATATTAGACCAGATTAATTGCATCAAGAATGGTAGGCCCGACAGAGATTTCCTCAAATTAAGGTGGAAACCGCATGATTGTGAGCTTCCACTATTTGATGCAACACAGTTCCTGGAGCTAGTACGAGGAAAGTCAATGGCCTTTGTTGGGGACTCAATGGCCACAAATCAACTAGAGTCCTTACTGTGCCTCATAAATACTGTTGCACATCCTGAGGATATTACAGCGAAATATACATCCAACGATAACATATTTTTCAGATGGTGGTTCGTGCTTGATTACAATTTTACAGTTACAACAATGTGGTCACCTTTTTTAGTGAAGTTCAACGACTCAGATCCCACTGGTCTTGGTTCCTATAGCCCAACGAAGCTTTATCTAGATGAAGCAGATGAAGCATGGAGCAGCAAAATTAAAGATTTTGACTTTGTGGTCTTCTCATCAGGACAGTGGTTCTTCCGACCATTAACGTTCTACGAGAATAGGCAAGTTGTCGGGTGTCAAAAATGCGAGAACAGTTCAGAGCTTAACTACTATGGGTACAAGAAGGCGTTTCGAACAGCTTTTAGGACAATCAGAAAGCTTGAAGGGTTCAAGGGATTGGCTTTTTTGGTGACTCATTCTCCGGAACACTTTGAGAACGGGGCGTGGAATGAAGGTGGGAGTTGTAACCGAACAAAGCCATTGGAAGAAAAAGGGGTTTATGAAAATGGTGATATTGTGGAAGCATTGCATCAGATACAATTGGAGGAGTTTAATATAGCGATAGAAAAGGGTTTGCGGTTTGGTTTGATAGATATAACTGATGCAATGGGGATGAGGACAGACGCACACCCCGGTAGGTTTAGGCCTGTGGGGGGTAAGAATAGCAATTTGAATTTGAATGACTGTGTTCACTGGTGCTTGCCAGGTGCTGTTGACACTTGGAATGAGTTTTTGCTGTATTTGATGAAACTGGAAGCTGAAAAACATCGTTAA

Predicted protein sequences of Glyma13g30300

Limit To All Plant Sequences

>Glyma13g30300.1   sequence type=predicted peptide   gene model=Glyma13g30300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGNIPKGAFLLPLTLFLILLLLPLFRNFIQPSPKTYATNLETKETRRCNIFSGNWVPYPKEPYYNNETCPFILDQINCIKNGRPDRDFLKLRWKPHDCELPLFDATQFLELVRGKSMAFVGDSMATNQLESLLCLINTVAHPEDITAKYTSNDNIFFRWWFVLDYNFTVTTMWSPFLVKFNDSDPTGLGSYSPTKLYLDEADEAWSSKIKDFDFVVFSSGQWFFRPLTFYENRQVVGCQKCENSSELNYYGYKKAFRTAFRTIRKLEGFKGLAFLVTHSPEHFENGAWNEGGSCNRTKPLEEKGVYENGDIVEALHQIQLEEFNIAIEKGLRFGLIDITDAMGMRTDAHPGRFRPVGGKNSNLNLNDCVHWCLPGAVDTWNEFLLYLMKLEAEKHR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain