Glyma13g30280 - SoyBase

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Report for Sequence Feature Glyma13g30280

Feature Type:	gene_model
Chromosome:	Gm13
Start:	32957744
stop:	32963399
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g30280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58630	AT	Annotation by Michelle Graham. TAIR10: sequence-specific DNA binding transcription factors \| chr3:21683928-21685771 REVERSE LENGTH=321	SoyBase	E_val: 8.00E-63	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG4282	KOG	Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain	JGI		ISS
UniRef100_B9S9B5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S9B5_RICCO	SoyBase	E_val: 6.00E-108	ISS
UniRef100_I1M1T8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1T8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g30280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g30280

Paralog	Evidence	Comments
Glyma15g08890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g30280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g229600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g30280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g30280

Limit To All Plant Sequences

>Glyma13g30280.1   sequence type=CDS   gene model=Glyma13g30280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGACTTCCACGACTCCCTCCTCACCACCACGCCGCCGCCATCGCGCCCCGTCCCCGTCCGCGAGGACTGCTGGTCCGAGGAGGCCTCCTCCACGCTCGTCGACGCCTGGGGCCGCCGCTACCTCGAGCTCAACCGCGGCAACCTCCGCCAAAAGGACTGGCAGGACGTCGCCGACGCCGTCAACGCGCTCCACGGCCACACCAAAAAGACGCACCGCACCGACGTCCAGTGCAAAAACCGCATCGACACCATTAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCGGCCTCCAACGGTACTCTCTCTTCCTCTTGGCCTTTCTACGAGCGCTTGGACGCTCTAATCGGCCCTAATTTTAGCGCGAAGAAATCAACCTCTTCGCCGTCTCCGTCGCCGCCGGTGGCTCTTCCTTTGCTGCCGCATCGGAAGAACCAGAACCAAAACCAGAACCCTTCCTCTTCTCCTGCGATTGCGGTGCCGCCGACGGCCGTCGCTCTGCCGCAGAAGCGCTCCTCGGCAGCGGCGATGGACGAGGGTTACTTCAGAAGGAATTACTCCGCCGTGGCTGCCGCGGCGGCGGCAGCGGAGGCTGATGAGGACGATGAGGAGGAAGACGAGGAGGAGGCGGAGGATTTGGAGGAGGAGGAGGAGGAAGAATGTGAAGAGGAAGGGAGAGGGAGCGAAGTGGAGGAAGGGGATAAGGAGAGGGAAGGGATGAGGAGGTTGGCGAAGGCGATAGAGAGGTTTGGGGAAGTTTATGAGAGAGTGGAGGCGCAGAAGCTGAGGCAGATGGTGGATTTGGAGAAACAGAGGATGCAGTTTGCTAAAGATCTTGAAGTGCAGAGGATGGAGATGTTTATGGACACACAGGTTCAGCTCGAGAGAATTAAGCGCGGTAAAAGATCTGGCTCTAATGATATGTATAGCTAG

Predicted protein sequences of Glyma13g30280

Limit To All Plant Sequences

>Glyma13g30280.1   sequence type=predicted peptide   gene model=Glyma13g30280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPDFHDSLLTTTPPPSRPVPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSASNGTLSSSWPFYERLDALIGPNFSAKKSTSSPSPSPPVALPLLPHRKNQNQNQNPSSSPAIAVPPTAVALPQKRSSAAAMDEGYFRRNYSAVAAAAAAAEADEDDEEEDEEEAEDLEEEEEEECEEEGRGSEVEEGDKEREGMRRLAKAIERFGEVYERVEAQKLRQMVDLEKQRMQFAKDLEVQRMEMFMDTQVQLERIKRGKRSGSNDMYS*

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