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Report for Sequence Feature Glyma13g30250

Feature Type:gene_model
Chromosome:Gm13
Start:32949856
stop:32950736
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g30250
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G29195AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes SoyBaseE_val: 1.00E-67ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1M1T7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1T7_SOYBN SoyBaseE_val: 3.00E-139ISS

Expression Patterns of Glyma13g30250
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g30250 not represented in the dataset
Glyma13g30250 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g30250
ParalogEvidenceComments
Glyma15g08900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g30250 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g229500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g30250
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g30250
>Glyma13g30250.1   sequence type=CDS   gene model=Glyma13g30250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAATTGAGATACTAGAGGAAGAATTCGAAGAAGAAGGCATGAGAAACAGCATCCGGTGTTGCATCTCCTGCATTCTCCCATGCGGGGCCCTGGACGTAATCCGCATAGTGCACTCCAACGGCCGCGTCGAGGAAATCAGCGGCACCATCAAGGCCAGCGAAATCATGAAGGCCCACCCCAAGCACGTGCTCAAGAAGCCTTCCTCCCCCTCCACCCAAGACGGCGTTGTTCCCAAGATCGTCGTCGTCCCTCCCGACGCCGACCTCCAACGCGGCAAGATTTACTTCCTCATGCCCCTCCCCTCGCCGCCGTCCGAAAAGAACAGCAGCCACCGCCAGAGGTCCTCCTCCGGGAAGAAGAAAAGAAAGGAACACCACAACGACAACAGAAACAACAACAACAACAATAATAATAACAACGCCACTTCTGTCGCCAACTTGCTCGCCTCTAATGAGCGCTACTTGACTGAAGTACTTTCCGACAAAGTTTCTACGCAGAGAGACAGAACACGAGGACGTGTCGCCGTCTGGAGGCCTCATTTGGAGAGCATTTCTGAGTCACCGTCACTACCTGATAATATGTAA
Predicted protein sequences of Glyma13g30250
>Glyma13g30250.1   sequence type=predicted peptide   gene model=Glyma13g30250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRIEILEEEFEEEGMRNSIRCCISCILPCGALDVIRIVHSNGRVEEISGTIKASEIMKAHPKHVLKKPSSPSTQDGVVPKIVVVPPDADLQRGKIYFLMPLPSPPSEKNSSHRQRSSSGKKKRKEHHNDNRNNNNNNNNNNATSVANLLASNERYLTEVLSDKVSTQRDRTRGRVAVWRPHLESISESPSLPDNM*






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