SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G29260 | AT | Annotation by Michelle Graham. TAIR10: peroxin 7 | chr1:10224923-10225876 FORWARD LENGTH=317 | SoyBase | E_val: 0 | ISS |
| GO:0006625 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to peroxisome | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0005053 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peroxisome matrix targeting signal-2 binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0277 | KOG | Peroxisomal targeting signal type 2 receptor | JGI | ISS | |
| PTHR22850 | Panther | WD40 REPEAT FAMILY | JGI | ISS | |
| PTHR22850:SF4 | Panther | PEROXISOMAL TARGETING SIGNAL 2 RECEPTOR | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_B9T845 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal targeting signal 2 receptor, putative n=1 Tax=Ricinus communis RepID=B9T845_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M1T5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1T5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g30230 not represented in the dataset |
Glyma13g30230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g08910 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g229400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g30230.4 sequence type=transcript gene model=Glyma13g30230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTAAAGGATGGAAATGGCTAATTAGGTACAAAATAATAAAAAAGTGGAACCCCGTGAAGAACGAGAGGTCCTTGAGCGGATGATAGCCAAAATGTGTTTACTTGCAGTTCCATCTTCCCTCCCCTGTTAATTCACCAAACAAATACCAAATTGCATCACGGATTAGTTGATCCCTCCTTTGAAAACAAAACGATGCCGATTTTCAAAACCCCGTTCAACGGCTACTCCGTAAAGTTCAGCCCCTTCTACGAGAACCGCCTGGCCGTGGCCACCGCCCAGAACTTCGGCATCCTGGGCAACGGCCGCCTCCACGTCCTCGACCTCTCCCCGGAGCCTTCCCTCCCCATCTCTGAGCTGGTCGCCTACGACACCGCCGACGGCATCTACGACGTGGCCTGGTCCGAATCCCACGACTCCATCGTCATCGCCGCCGTCGCCGACGGCTCCGTTAAGCTCTACGACCTGGCCCTCCCCCCAACCTCCAACCCCATCCGCTCCTTCCAGGAACACACCCGCGAGGTCCACTCCGCCGACTACAACCCCGTCCGCCGTGACTCCTTCCTCTCCTCCTCCTGGGACGACACCGTCAAGCTCTGGACCCTCGACCGCCCCACCAGCGTCCGCACCTTCAAGGAGCACGCCTACTGCGTCTACTCCGCCGTCTGGAACCCCCGCCACGCCGACGTCTTCGCCTCCGCCTCCGGCGACTGCACCCTCCGCGTCTGGGACGTCCGCGAGCCCGGCTCCACCATGATCCTCCCCGCCCACGAGTTCGAGATCCTCGCCTGCGACTGGAACAAGTACGACGAGTGTGTCATTGCCACTGCCTCCGTCGATAAGAGCGTTAAGGTTTGGGACGTGAGGAACTATAGGGTTCCCCTTTGTGTGCTCAATGGGCACGGGTATGCTGTTAGGAAGGTGAAATTCTCGCCACACGTGCGGAATTTGATGGTGTCTTGCTCCTATGATATGACGGTGTGTGTTTGGGATTTCATGGTGGAGGATGCTCTGGTGAGTAGGTATGATCACCACACGGAGTTCGCGGTCGGGGTGGATATGAGCGTGCTTGTTGAGGGCCTCATGGCTAGCACTGGTTGGGATGAACTTGTTTATGTGTGGCAGCATGGGACTGACCCCAGGGCACCTTGAAGGTGAAGAGTGAAAAATGAATAGAGAGTTCTATAGATCTTTACCACACATTCATACAAGCTTCAAGTATACAGATTATATATATAATTCACCATAGTGAGGTGCTCTGGAAGGTTGAATAGTCTGGTTACAGTGGTGAATTATGGATGGTAACAGGTGGATATGCAACTTCTTTAGCTATCTATATCTACATTCTTTTTTAAATCCATTACCAAAATCTGTTTCTTATCATGTTTGAAACGAAAATGTAAACTGCTTTTGTCCATACCATGTCAAATCTCCTATCTGAAATGTTAGATAACCAAGATATCTGAATAATGATCGTTCTTATGAATATGTTGGTGGATGATTGAAATCTAATGTGAACCTTCGAAGGAAAAAAGACATAAAGCTAAGAGATTTTCCATGTGGCTTTATATAGACTGACATGCTTTGGTCTATTTTAGGTGAACTTCTAGCAAATCTAAATTAATGA
>Glyma13g30230.3 sequence type=CDS gene model=Glyma13g30230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGATTTTCAAAACCCCGTTCAACGGCTACTCCGTAAAGTTCAGCCCCTTCTACGAGAACCGCCTGGCCGTGGCCACCGCCCAGAACTTCGGCATCCTGGGCAACGGCCGCCTCCACGTCCTCGACCTCTCCCCGGAGCCTTCCCTCCCCATCTCTGAGCTGGTCGCCTACGACACCGCCGACGGCATCTACGACGTGGCCTGGTCCGAATCCCACGACTCCATCGTCATCGCCGCCGTCGCCGACGGCTCCGTTAAGCTCTACGACCTGGCCCTCCCCCCAACCTCCAACCCCATCCGCTCCTTCCAGGAACACACCCGCGAGGTCCACTCCGCCGACTACAACCCCGTCCGCCGTGACTCCTTCCTCTCCTCCTCCTGGGACGACACCGTCAAGCTCTGGACCCTCGACCGCCCCACCAGCGTCCGCACCTTCAAGGAGCACGCCTACTGCGTCTACTCCGCCGTCTGGAACCCCCGCCACGCCGACGTCTTCGCCTCCGCCTCCGGCGACTGCACCCTCCGCGTCTGGGACGTCCGCGAGCCCGGCTCCACCATGATCCTCCCCGCCCACGAGTTCGAGATCCTCGCCTGCGACTGGAACAAGTACGACGAGTGTGTCATTGCCACTGCCTCCGTCGATAAGAGCGTTAAGGTTTGGGACGTGAGGAACTATAGGGTTCCCCTTTGTGTGCTCAATGGGCACGGGTATGCTGTTAGGAAGGTGAAATTCTCGCCACACGTGCGGAATTTGATGGTGTCTTGCTCCTATGATATGACGGTGTGTGTTTGGGATTTCATGGTGGAGGATGCTCTGGTGAGTAGGTATGATCACCACACGGAGTTCGCGGTCGGGGTGGATATGAGCGTGCTTGTTGAGGGCCTCATGGCTAGCACTGGTTGGGATGAACTTGTTTATGTGTGGCAGCATGGGACTGACCCCAGGGCACCTTGA >Glyma13g30230.4 sequence type=CDS gene model=Glyma13g30230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGATTTTCAAAACCCCGTTCAACGGCTACTCCGTAAAGTTCAGCCCCTTCTACGAGAACCGCCTGGCCGTGGCCACCGCCCAGAACTTCGGCATCCTGGGCAACGGCCGCCTCCACGTCCTCGACCTCTCCCCGGAGCCTTCCCTCCCCATCTCTGAGCTGGTCGCCTACGACACCGCCGACGGCATCTACGACGTGGCCTGGTCCGAATCCCACGACTCCATCGTCATCGCCGCCGTCGCCGACGGCTCCGTTAAGCTCTACGACCTGGCCCTCCCCCCAACCTCCAACCCCATCCGCTCCTTCCAGGAACACACCCGCGAGGTCCACTCCGCCGACTACAACCCCGTCCGCCGTGACTCCTTCCTCTCCTCCTCCTGGGACGACACCGTCAAGCTCTGGACCCTCGACCGCCCCACCAGCGTCCGCACCTTCAAGGAGCACGCCTACTGCGTCTACTCCGCCGTCTGGAACCCCCGCCACGCCGACGTCTTCGCCTCCGCCTCCGGCGACTGCACCCTCCGCGTCTGGGACGTCCGCGAGCCCGGCTCCACCATGATCCTCCCCGCCCACGAGTTCGAGATCCTCGCCTGCGACTGGAACAAGTACGACGAGTGTGTCATTGCCACTGCCTCCGTCGATAAGAGCGTTAAGGTTTGGGACGTGAGGAACTATAGGGTTCCCCTTTGTGTGCTCAATGGGCACGGGTATGCTGTTAGGAAGGTGAAATTCTCGCCACACGTGCGGAATTTGATGGTGTCTTGCTCCTATGATATGACGGTGTGTGTTTGGGATTTCATGGTGGAGGATGCTCTGGTGAGTAGGTATGATCACCACACGGAGTTCGCGGTCGGGGTGGATATGAGCGTGCTTGTTGAGGGCCTCATGGCTAGCACTGGTTGGGATGAACTTGTTTATGTGTGGCAGCATGGGACTGACCCCAGGGCACCTTGA
>Glyma13g30230.3 sequence type=predicted peptide gene model=Glyma13g30230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPIFKTPFNGYSVKFSPFYENRLAVATAQNFGILGNGRLHVLDLSPEPSLPISELVAYDTADGIYDVAWSESHDSIVIAAVADGSVKLYDLALPPTSNPIRSFQEHTREVHSADYNPVRRDSFLSSSWDDTVKLWTLDRPTSVRTFKEHAYCVYSAVWNPRHADVFASASGDCTLRVWDVREPGSTMILPAHEFEILACDWNKYDECVIATASVDKSVKVWDVRNYRVPLCVLNGHGYAVRKVKFSPHVRNLMVSCSYDMTVCVWDFMVEDALVSRYDHHTEFAVGVDMSVLVEGLMASTGWDELVYVWQHGTDPRAP* >Glyma13g30230.4 sequence type=predicted peptide gene model=Glyma13g30230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPIFKTPFNGYSVKFSPFYENRLAVATAQNFGILGNGRLHVLDLSPEPSLPISELVAYDTADGIYDVAWSESHDSIVIAAVADGSVKLYDLALPPTSNPIRSFQEHTREVHSADYNPVRRDSFLSSSWDDTVKLWTLDRPTSVRTFKEHAYCVYSAVWNPRHADVFASASGDCTLRVWDVREPGSTMILPAHEFEILACDWNKYDECVIATASVDKSVKVWDVRNYRVPLCVLNGHGYAVRKVKFSPHVRNLMVSCSYDMTVCVWDFMVEDALVSRYDHHTEFAVGVDMSVLVEGLMASTGWDELVYVWQHGTDPRAP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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