Glyma13g30196 - SoyBase

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Report for Sequence Feature Glyma13g30196

Feature Type:	gene_model
Chromosome:	Gm13
Start:	32927187
stop:	32931191
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g30196

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64270	AT	Annotation by Michelle Graham. TAIR10: splicing factor, putative \| chr5:25706909-25710718 FORWARD LENGTH=1269	SoyBase	E_val: 0	ISS
GO:0006397	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA processing	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
KOG0213	KOG	Splicing factor 3b, subunit 1	JGI		ISS
PTHR12097	Panther	SPLICING FACTOR 3B, SUBUNIT 1-RELATED	JGI		ISS
PF02985	PFAM	HEAT repeat	JGI		ISS
PF08920	PFAM	Splicing factor 3B subunit 1	JGI		ISS
UniRef100_G7IPK2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Splicing factor 3B subunit n=1 Tax=Medicago truncatula RepID=G7IPK2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B1F1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B1F1 related cluster n=1 Tax=unknown RepID=UPI000233B1F1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g30196

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g30196 not represented in the dataset	Glyma13g30196 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g30196

Paralog	Evidence	Comments
Glyma15g08941	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g30196 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g229200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g30196

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g30196

Limit To All Plant Sequences

>Glyma13g30196.1   sequence type=CDS   gene model=Glyma13g30196   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGACTACGCGCGCGCTCAATCAGATCATCTCGCCGGAGCGCCACGACCCCTTCGCCGCCGGCGAGAAGACCCCGGACCCCTCTGTTAGGACCTACGCCGATATCATGCGCGAGGAGGCGCTCAAGAGGGAGAAGGAGGAGACTCTGAAAGCCATCGCTAAGAAGAAGAAGGAGGAAGAGGAAGCAGCGAAGGATGCTCCGCAGCAACAGCAGCAGAAGAGGAGGAACCGCTGGGACCAGTCTCAGGATGACGGTGGTGCCGCGGCGGCGGCGGCGGCGAAGAAGGCCAAAACCTCTGATTGGGACATGCCGGACACCACTCCGGGGCGGTGGGATGCCACCCCGACGCCGGGGAGGGTTACCGATGCGACACCGGGGAGGAGGAACCGGTGGGATGAAACTCCCACTCCTGGTAGAGTTGCGGATTCTGATGCAACACCTGCAGGTGGTGCTACACCGGGTGCTACACCTGCTGGTATGACTTGGGATGCTACTCCTAAGCTTTCTGGGATGGCTACTCCAACTCCCAAGAGGCAAAGGTCGAGGTGGGATGAGACTCCCGCTACTATGGGAAGTGCTACTCCGTTGCCAGGTGCTACTCCTGCTGCTGCTTATACTCCCGGTGTTACTCCTGTTGGTGGAATTGAACTTGCTACTCCAACCCCTGGGGCTTTACAAGGCTCCATTACTCCGGAACAATACAATTTGTTGAGGTGGGAGAGGGATATTGAAGAGAGGAATCGCCCCTTGACTGATGAGGAGCTTGATGCTATGTTTCCTCAAGAGGGGTATAAGGTTTTGGATCCCCCCGCATCCTATGTGCCCATTAGGACTCCAGCGAGGAAGCTTCTTGCCACTCCTACGCCTTTGGGGACTCCTCTTTATCAAATTCCTGAGGAGAATCGCGGGCAGCAGTTTGATGTTCCCAAGGAAGCACCCGGTGGGTTGCCGTTTATGAAGCCAGAGGATTACCAGTACTTTGGGGCACTGTTGAATGAGGAGAATGAAGAGGAGTTGTCTCCAGATGAGCAGAAGGAAAGGAAGATTATGAAGCTTCTGCTTAAAGTGAAGAATGGGACGCCACCGCAGAGGAAGACTGCATTGAGGCAGCTTACGGATAAGGCTCGCGAGTTTGGTGCTGGGCCGTTGTTTAACCGGATTTTGCCATTGCTCATGCAGCCTACCCTGGAGGATCAAGAGAGGCATCTTTTGGTTAAGGTAATTGACAGGGTTTTGTATAAGTTAGACGAATTGGTTCGGCCTTTTGTGCATAAGATTCTTGTTGTTATTGAACCCTTGTTGATTGATGAAGACTACTATGCGCGTGTGGAGGGCAGAGAAATAATATCTAATCTTAGTAAAGCTGCTGGGCTGGCTACTATGATTGCTGCTATGCGACCTGATATTGATAACATTGATGAATATGTTAGGAACACTACTGCTAGGGCCTTTAGTGTTGTTGCTTCTGCACTTGGTATTCCTGCACTGTTGCCATTCTTGAAGGCTGTGTGTCAGAGTAAGAAATCATGGCAAGCTAGGCACACAGGGATTAAGATCGTGCAGCAGATCGCCATTTTAATTGGTTGTGCGGTGTTGCCACATCTGAGATCTCTTGTGGAAATTATAGAGCATGGTCTGAATGATGAGAATCAGAAGGTGAGAACGATCTCTGCATTGTCTCTTGCTGCTCTTGCTGAGGCTGCTGCTCCTTATGGTATTGAAAGCTTTGACTCTGTTTTGAAGCCACTGTGGAAGGGTATTAGGCAACACCGTGGGAAGGTGTTGGCTGCATTTCTGAAGGCAATTGGGTTTATTATTCCGTTGATGGAAGCCCTGTATGCCAGTTACTATACTAAGGAAGTCATGCTCATTCTGATTCGTGAATTCCAGTCACCTGATGAAGAAATGAAGAAAATTGTTCTGAAAGTGGTGAAGCAGTGTGTGAGCACTGAGGGTGTGGAAGCTGAATATATTAGAAATGATATCCTACCTGAGTTTTTCAAGAATTTCTGGGTTAGGAGGATGGCTCTAGATAGAAGAAACTATAAGCAACTTGTGGAGACTACTGTAGAGATAGCAAACAAAGTTGGTGTTGCAGATATTGTTGGTAGAATTGTTGAGGATCTTAAAGATGAGAGTGAACCTTATAGGCGTATGGTTATGGAGACTATTGAGAAGGTGGTTACTAACCTGGGGGCATCTGATATTGATGCACGGCTGGAAGAGCTTCTGATTGATGGTATTCTTTATGCCTTCCAAGAGCAGACCAGTGACGATGCTAATGTGATGCTTAATGGGTTTGGTGCAGTCGTAAACTCACTTGGGCAGAGAGTGAAGCCATATCTTCCTCAGATTTGTGGTACTATAAAGTGGCGATTGAACAACAAGAGTGCAAAGGTGAGACAGCAAGCGGCAGATCTCATTTCAAGGATTGCTGTTGTCATGAAGCAGTGCCATGAGGAACAATTGATGGGTCATCTTGGTGTTGTCTTGTATGAGTATTTGGGAGAAGAGTATCCTGAAGTTTTAGGATCAATTTTGGGAGCTCTCAAGTCAATTGTCAATGTTATCGGTATGACAAAGATGACTCCACCTATTAAGGATTTACTTCCCAGGTTGACTCCGATTTTGAAGAATAGGCACGAGAAAGTCCAGGAGAATTGTATTGACCTTGTTGGTAGGATTGCTGACCGTGGAGCTGAGTTTGTACCAGCAAGAGAGTGGATGAGGATTTGTTTTGAGTTGCTTGAGATGCTCAAAGCACACAAGAAGGGAATCCGTAGAGCTACAGTGAACACTTTTGGATATATTGCAAAAGCCATTGGACCACAAGATGTCTTGGCAACCCTATTGAATAATCTCAAGGTGCAGGAGAGGCAGAACCGTGTTTGCACAACCGTAGCCATTGCAATTGTTGCAGAAACATGTTCACCCTTCACAGTTTTACCAGCATTGATGAACGAGTATCGCGTGCCGGAGCTTAATGTGCAAAATGGTGTGCTCAAGTCCCTCTCTTTCCTATTTGAGTACATTGGTGAAATGGGAAAGGATTACATCTATGCTGTGACTCCTTTGCTTGAAGATGCACTCATGGACAGGGATTTGGTTCACAGGCAGACAGCTGCTTCTGCTGTGAAGCATATGGCTCTGGGAGTGGCTGGTTTAGGTTGTGAGGATGCACTGGTTCATTTGCTGAATTATGTCTGGCCAAACATTTTTGAAACTTCTCCTCATGTGATTAATGCTGTGATGGAAGCAATTGAAGGGATGAGGGTAGCGTTGGGAGCAGCTGTTGTACTGAATTATTGTCTACAAGGACTCTTCCACCCTGCACGAAAAGTTAGGGAGGTATATTGGAAGATCTACAACTCTCTCTATATTGGAGCCCAGGATGCTCTTGTAGCATCGTACCCTGCCTTGGAGGATGAGCAGAACAATGTTTACAGCAGGCCAGAGTTAATGATGTTCATCTAG

Predicted protein sequences of Glyma13g30196

Limit To All Plant Sequences

>Glyma13g30196.1   sequence type=predicted peptide   gene model=Glyma13g30196   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTRALNQIISPERHDPFAAGEKTPDPSVRTYADIMREEALKREKEETLKAIAKKKKEEEEAAKDAPQQQQQKRRNRWDQSQDDGGAAAAAAAKKAKTSDWDMPDTTPGRWDATPTPGRVTDATPGRRNRWDETPTPGRVADSDATPAGGATPGATPAGMTWDATPKLSGMATPTPKRQRSRWDETPATMGSATPLPGATPAAAYTPGVTPVGGIELATPTPGALQGSITPEQYNLLRWERDIEERNRPLTDEELDAMFPQEGYKVLDPPASYVPIRTPARKLLATPTPLGTPLYQIPEENRGQQFDVPKEAPGGLPFMKPEDYQYFGALLNEENEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPFVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTISALSLAALAEAAAPYGIESFDSVLKPLWKGIRQHRGKVLAAFLKAIGFIIPLMEALYASYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCVSTEGVEAEYIRNDILPEFFKNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVTNLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKSIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVASYPALEDEQNNVYSRPELMMFI*

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