Glyma13g29760 - SoyBase

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Report for Sequence Feature Glyma13g29760

Feature Type:	gene_model
Chromosome:	Gm13
Start:	32612123
stop:	32614207
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g29760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18880	AT	Annotation by Michelle Graham. TAIR10: heat shock transcription factor A4A \| chr4:10347769-10349051 REVERSE LENGTH=401	SoyBase	E_val: 9.00E-123	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0627	KOG	Heat shock transcription factor	JGI		ISS
PTHR10015	Panther	HEAT SHOCK TRANSCRIPTION FACTOR	JGI		ISS
PTHR10015:SF7	Panther	HEAT SHOCK TRANSCRIPTION FACTOR	JGI		ISS
PF00447	PFAM	HSF-type DNA-binding	JGI		ISS
UniRef100_I1M1P7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1P7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q940V6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat shock transcription factor n=1 Tax=Phaseolus acutifolius RepID=Q940V6_PHAAT	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g29760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g29760

Paralog	Evidence	Comments
Glyma15g09280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g29760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g225700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g29760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g29760

Limit To All Plant Sequences

>Glyma13g29760.1   sequence type=CDS   gene model=Glyma13g29760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAGGAAGCTCAGGGCAGTTCTAGTTCCCTGCCACCTTTCCTCACCAAGATTTATGAGATGGTGGATGATCCTTCAACTAATTCCATTGTTTCATGGAGTGCCACCAATAGGAGTTTCATTGTTTGGAACCCACCAGAGTTTTCAAGGGATTTGTTACCCAAATACTTTAAGCACAACAACTTTTCCAGTTTCATCAGGCAGCTCAACACTTACGGCTTTAGAAAGATTGATCCTGAACAATGGGAATTTGCAAATGATGATTTTGTAAGAGGTCAGCCACATCTTTTGAAGAACATCCATAGGCGCAAACCTGTCCATAGCCATTCTTTGCAGAATATCCAGGGTCAAGGGGTTTCTTCGCTGACTGAATCAGAAAGGCAGAGTTTTAAGGATGAGATAGAGAAGCTTAAACATGAAAAAGAACAACTTCTTCGGGAGTTAGAGATGCATGAACAGGAGTGGAAAATGTATGAGGTACAATTACAACACTCCAATGATCGTTTGGAAAAGTTGGAAAAGAAGCAAGAAAATTTGGTTTCTTCTGTCTCTCAAGTGTTGCAGAAACCTGGGATTGCCTTAAATCTCTTGCTGTTGACAGAAAACATGGATAGAAAACGGAGGTTGCCAAGAAGTGGTCTCTTTAGTGATGACGCTAGCATTGAAGATCATATGGAAACTTCCCAAGTATTACCAAGGGAAAATGCAGATGGTGCTTCTATTTTCTCATCGAGCACAGAACGGTTGGATCTCCTTGAGTCATCCATGACGTTTTGGGAGAATATTACACATGATGTTGGTGACGTCTTTGTTCAAAGTCATTTAAACTTGGATTTTGATGAATCTACAAGTTGTGCAGATAGTCCAGCTATATCTTGTGTGCAACTAGAAGTTGAAGATCAGCCTAAGTCACATGGAATCAACGTGAGTTCTGAGCCAGCTGTAGTTGCGGCTCCTGATCTTGATGCATCAAAAGAACAACCTGTCGAAACAGCTCCTCTGACTACTGGTGTTAATGACATATTCTGGGAACGATTCTTGACAGAGAATCCTGGTTCGTCAGAAATGCAGGAAGCTCAGTCTGAAAGAGAGGATTCTGATGGCAGAAGTAATGCCAAATTTTGGTGGAACATTAGGAATGTAAATAACCCTCCAGAACAGATGGGGCATTCTTAG

Predicted protein sequences of Glyma13g29760

Limit To All Plant Sequences

>Glyma13g29760.1   sequence type=predicted peptide   gene model=Glyma13g29760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMEEAQGSSSSLPPFLTKIYEMVDDPSTNSIVSWSATNRSFIVWNPPEFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDDFVRGQPHLLKNIHRRKPVHSHSLQNIQGQGVSSLTESERQSFKDEIEKLKHEKEQLLRELEMHEQEWKMYEVQLQHSNDRLEKLEKKQENLVSSVSQVLQKPGIALNLLLLTENMDRKRRLPRSGLFSDDASIEDHMETSQVLPRENADGASIFSSSTERLDLLESSMTFWENITHDVGDVFVQSHLNLDFDESTSCADSPAISCVQLEVEDQPKSHGINVSSEPAVVAAPDLDASKEQPVETAPLTTGVNDIFWERFLTENPGSSEMQEAQSEREDSDGRSNAKFWWNIRNVNNPPEQMGHS*

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