Glyma13g29741 - SoyBase

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Report for Sequence Feature Glyma13g29741

Feature Type:	gene_model
Chromosome:	Gm13
Start:	32599906
stop:	32603391
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g29741

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18670	AT	Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein \| chr3:6424135-6426471 REVERSE LENGTH=598	SoyBase	E_val: 7.00E-50	ISS
UniRef100_G7ILT7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Inversin n=1 Tax=Medicago truncatula RepID=G7ILT7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BB9C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BB9C related cluster n=1 Tax=unknown RepID=UPI000233BB9C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g29741

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g29741 not represented in the dataset	Glyma13g29741 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g29741

Paralog	Evidence	Comments
Glyma15g09316	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g29741 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g225500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g29741

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g29741

Limit To All Plant Sequences

>Glyma13g29741.1   sequence type=CDS   gene model=Glyma13g29741   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAAGCCAAATATAATGGCCAAGAGATACGAATGGGAAGCTTTGGGAAAAATTTTCAAGAAACACAAGGATTTATTGGACAAGCAAATTGACTTGCATGAGAGGACTCCTCTTCACTACGCAGCACACTGTGGCAGGGAGACATCAAGCGGCTGCTGCACATCTTTATGGATATTGGAACGATATGAGCACCTCGCTTATGAAAAGGAAGACAATGAACTCACAACTCTGCAATTGCTAGCAAAAATGCCCTCTACGTTTAAAAGTCAAACCCAAATGGGGCCTTTGAAAATTTTCATATACCTTTATCACAAATACTACAATCAAAATAAGGAATACACGTCAAAAAAGGAAGATTTGGAAAGTGGCAAGGACGACAAAAATGAGCCATCTCCAACTCAAATGAAGCTCGAGCATAATACAAGAGAAGGACAACATTTGAAAAGCGGCGGGAAGACAGCTATTTCATGGATGTGGTACACCATGTGGAAGATTATGGCCAAAGAATGGGAAGAGATTGATAAACTTTGGAGGAAAAAGGAAATGCATAATTTAGCAAAGGAACTTGTAAACTTGCTAGCACCAAAAGACTATTCATGGCGAAATACTGCTATAGCAAGGGATAGAACAGTTTCCATGGGGAGATCACAACAAGAAGGAAAGTCTAAAGAAATAAAAGGGGAACAAGAGGGTGCAAGGAAACCAACTTATACCCCCTTGCTTATGGCTGCTTGCAATGGAATTACGGAGATTGTTGAAGTAATAATTCATTTCCATCCTCATTCAATTGAGCATGTTAGTGACGACGAGCAGAACATATTGTACATGGCTGTCAAACACCGCCAGAAGAAAATTTACCAAATCTTAAAGAAATTGAAAATGGTGAGAAGTCTTGCTGGAAAAATAGACAAGGAAAATAACACTGTCCTTCACTACACTGCAGAATTTCAAGGGGGTTCCCAACCGGGTTTTGCTATGCAATTGCAAGAGGAGTTGCATTGGTTCGATCGAATAGAAAAGAGACTCCCTTATCACTACACCATTCACAAGAACAAATACAACAAAACAGCAAAGCAACTTTTTATGGAAAAGCATGAAGCACTGCTCAGCGATGCTCGTGAATGGATAAAAGAAACTGCTCAGTCATGTTCTGCAGTTGCTGTTCTTGTTGCCACTGTTGTCTTTGCCGCGGCATACACAGTCCCCGGAGGCACAGATGGCAATGGCTTCCCTAGATTTCTTCATGAAACTATATTCTTGGTGTTCACAATTATGGATATTGTGGCTCTTGTAAGTTCACTGGGTTCGGTGAATATGTTCCTTTCAATCCTCACATCACCTTGTGAGATGTGGGATTTTCGGAAGTCTCTCCCACGGAAATTGAATGCAGGTTTTGCCTTGCTGTTCTTCTCCATGGCCACAACAATGCTATCATTCAGTGCAACAGTTCTGATCAACATCAAGTTAGAGAAGAACAAATGGACTTCAACTTTGACTTATGCTGCAGCATTCTTTCCTGTCTGTATATTTGCATTGGTGCAGTTCCCTCTATATGTTGCCATGAAAGGATGTTTGAGGAGTTTGCTTAGGAACCTTAAGAAGATCATTCCTCGTTTCCTCCTCAACTTGGTCAAAAAGAGCAGGAGAAAGAAATTGTGGGACATTTGA

Predicted protein sequences of Glyma13g29741

Limit To All Plant Sequences

>Glyma13g29741.1   sequence type=predicted peptide   gene model=Glyma13g29741   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKPNIMAKRYEWEALGKIFKKHKDLLDKQIDLHERTPLHYAAHCGRETSSGCCTSLWILERYEHLAYEKEDNELTTLQLLAKMPSTFKSQTQMGPLKIFIYLYHKYYNQNKEYTSKKEDLESGKDDKNEPSPTQMKLEHNTREGQHLKSGGKTAISWMWYTMWKIMAKEWEEIDKLWRKKEMHNLAKELVNLLAPKDYSWRNTAIARDRTVSMGRSQQEGKSKEIKGEQEGARKPTYTPLLMAACNGITEIVEVIIHFHPHSIEHVSDDEQNILYMAVKHRQKKIYQILKKLKMVRSLAGKIDKENNTVLHYTAEFQGGSQPGFAMQLQEELHWFDRIEKRLPYHYTIHKNKYNKTAKQLFMEKHEALLSDAREWIKETAQSCSAVAVLVATVVFAAAYTVPGGTDGNGFPRFLHETIFLVFTIMDIVALVSSLGSVNMFLSILTSPCEMWDFRKSLPRKLNAGFALLFFSMATTMLSFSATVLINIKLEKNKWTSTLTYAAAFFPVCIFALVQFPLYVAMKGCLRSLLRNLKKIIPRFLLNLVKKSRRKKLWDI*

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