Glyma13g29730 - SoyBase

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Report for Sequence Feature Glyma13g29730

Feature Type:	gene_model
Chromosome:	Gm13
Start:	32595164
stop:	32599584
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g29730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29800	AT	Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD-type zinc finger family protein \| chr1:10432736-10435177 FORWARD LENGTH=510	SoyBase	E_val: 0	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0035091	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1843	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR15629	Panther	SH3YL1 PROTEIN	JGI		ISS
PF01363	PFAM	FYVE zinc finger	JGI		ISS
PF04366	PFAM	Family of unknown function (DUF500)	JGI		ISS
UniRef100_B9S8F3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9S8F3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1M1P3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1P3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g29730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g29730

Paralog	Evidence	Comments
Glyma15g09330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g29730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g225400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g29730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g29730

Limit To All Plant Sequences

>Glyma13g29730.1   sequence type=CDS   gene model=Glyma13g29730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGCAAAATCTTGGATTCTCAGAATCAGGTTAAATTTGTGGAAAATTTATCTGCAAGGGTTTCTAGTTGCTCCCTTGGCGACAAGATATCCTATTCCGATTCTCCTCTGGATGATGAGGTGGATGGTCGGAGGAGCAATTGTGTTACTAAAGAGTATTGTGATTCGTTTTTCAATGATAGCACTGAAGGGCATTGTATAAATTCTTCTAGATTATATCTTGAATCACCCGAAAAACAAATGGAAAAGAATAACGAGGACATGGAGTCTTCAGCTAATCTTCAGAAGCGGGGAAAGTACTTCTATTATGATACTCCACTGCAAGAAGATACTGGAGTTTGGATACCAGTTTCTGTTCCACCAATGTTGGAAGATGATCACAAAGAGTGGACCAAAGGTTTTCACTCAAATGGTGGCTATTTTCCTGATGATGATATGGGATGGAATCAATACGTTGGAGATGAAAGGGAATTGACTATGTGGGATGTGCTAGCAGAAATGTTACTTGTAGCTCGAGGAAAAGTGACTTCTTTGGCATCGGGAGATATTCATACATGTAATTTTTCATGGATATCCAGCCATGTGCTTGAACAAGCTTGGAGAGAAATGGCACAAACTCTCACAGAGGCCAACTTTGGTAATGTAAAGGAACTACTGGAAGCAGAGCCTCCAAAATGGTTAGCAGATAGTGCTGCTTCTTCTTGTATGCTTTGTGGTGTGAGATTTCATCCCATCATGTGCTCCCGTCATCACTGCCGGTTTTGTGGAGGAATATTTTGTGGTGAGTGTTCCAAGGGGCGGAGTTTGTTGCCTTCAAAATTCCGAGTTTCTGACCCCCAAAGAGTATGTGATGTATGCTGTGTCCGACTTGACTCTGTGCAGCCTTATTTGATGAATCATGTAAGTAATGCTGCTCAGTTGCCAACCCATGACCTGACAGATCTGAGCACTTTGAGATCGTGGATTAATTTTCCTTGGGGGCAGTCTATGGAATATGAAATTTACAAGGCAACTAACACTATCAAGGCTTATAATCAGATAGGTTTTCTAAAGCCGGAGAAGTCAATTCCAGATGCCATTCTAAGACAAGCAAAAGGCCTTGCAATTATCACCGTGGTCAAAGTAGGAGTGGTGGTTACTTATAATATTGGAACAGGACTTGTGGTTGCACGTAGGGAAGATGGTTCATGGTCTCCTCCATCTGCTGTTTCCACCTTTGGTGTAGGGTGGGGGGCTCAGGCTGGAGGTGAGTTGACAGACTTCATTATTGTTTTGAGAACAAATGATGCTGTCAAGACATTTAGTGGCAATATGCATCTTTCACTTGGAGCTGGTTTGAGTGCTGCAGTAGGCATTGTTGGTAGGTCAGTTGAAGCTGATGTTCGAGCTGGTGATGGTGGCTATGCTGCTTGTTATACCTACAGCTGCAGTAAAGGTGCATTTGTTGGATGTTCACTTGAAGGAAGTATGGTGACTACTCGCACACAAGAAAATTCCCTTTTCTATGGCAGCCAATCTATTACTGCAACAGATATACTTCTTGGCTCGTTGCCTAGGCCACCTGCTGCTGCCATTCTCTACCGTACACTTGTTGATTTGTATTCGAAGTTTGATGATTAA

Predicted protein sequences of Glyma13g29730

Limit To All Plant Sequences

>Glyma13g29730.1   sequence type=predicted peptide   gene model=Glyma13g29730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGKILDSQNQVKFVENLSARVSSCSLGDKISYSDSPLDDEVDGRRSNCVTKEYCDSFFNDSTEGHCINSSRLYLESPEKQMEKNNEDMESSANLQKRGKYFYYDTPLQEDTGVWIPVSVPPMLEDDHKEWTKGFHSNGGYFPDDDMGWNQYVGDERELTMWDVLAEMLLVARGKVTSLASGDIHTCNFSWISSHVLEQAWREMAQTLTEANFGNVKELLEAEPPKWLADSAASSCMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPSKFRVSDPQRVCDVCCVRLDSVQPYLMNHVSNAAQLPTHDLTDLSTLRSWINFPWGQSMEYEIYKATNTIKAYNQIGFLKPEKSIPDAILRQAKGLAIITVVKVGVVVTYNIGTGLVVARREDGSWSPPSAVSTFGVGWGAQAGGELTDFIIVLRTNDAVKTFSGNMHLSLGAGLSAAVGIVGRSVEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSMVTTRTQENSLFYGSQSITATDILLGSLPRPPAAAILYRTLVDLYSKFDD*

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