Glyma13g29710 - SoyBase

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Report for Sequence Feature Glyma13g29710

Feature Type:	gene_model
Chromosome:	Gm13
Start:	32587847
stop:	32589066
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g29710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45700	AT	Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr5:18537378-18538196 FORWARD LENGTH=272	SoyBase	E_val: 4.00E-62	ISS
GO:0001708	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell fate specification	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016791	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatase activity	SoyBase	N/A	ISS
KOG1605	KOG	TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation)	JGI		ISS
PTHR12210	Panther	NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED	JGI		ISS
PTHR12210:SF38	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03031	PFAM	NLI interacting factor-like phosphatase	JGI		ISS
UniRef100_G7ILM8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CTD small phosphatase-like protein n=1 Tax=Medicago truncatula RepID=G7ILM8_MEDTR	SoyBase	E_val: 5.00E-125	ISS
UniRef100_I1M1P2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1M1P2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g29710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g29710

Paralog	Evidence	Comments
Glyma15g09340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g29710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g225100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g29710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g29710

Limit To All Plant Sequences

>Glyma13g29710.2   sequence type=CDS   gene model=Glyma13g29710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCCTTAACTCAACACAACAGCACAAACCACATCATTTTCGCCATTCTCTGATTTCTCTCTCCGATATCCAAAGAATCCAAAAAATGGTATCAAAAGTGAAGAGAAGCCCAGTGAAGTCCATCAAGGACCTCCGCAACAGCAACAACCACAGTAACCGTCGCTGGCGCAGGAAAACCTCCATTAAAAATGTAGTGGCGGCGTCCTCCGCCGGCCTGGCCACCATCCGCCGCCGCATCACGAAACTCTTCTTCAAGATCGCGCACCTCAGCACCAGCGCCCACAAGAAAAAAGCAACCTCGTACAATATCCTCAAAAAGACAAAAACAACAACCGACGAACACGAACAACTCGACAACATTCGCCGAACCCTCTTGTTCGACGACACCACCACGCTCCTCCCTCCGTCGTTCTCCCTCCGAAAAACGGTGTTCCTCGACCTCGACGAAACGCTCGTCCACTCCCACCCCTCGCCGCCGCCGGAGCGCTTCGACTTCGTCGTCCGACCGGTCATCGGCGGCGAGCCCATGGACTTCTACGTCCTGAAACGTCCCGGCGTCGACGAGTTCCTCGAGTCCCTCGCCGCCAAGTACGAGGTTGTCGTTTTCACCGCGGCGCTGAAGGAATACGCCTCCATGGTCCTTGACCGGCTCGACCGGAACCGGTTCATCTCGCACCGGCTTTACCGTGACTCGTGCCGAAACATCGACGGGAAGCTCGTGAAGGATCTTAACGAAACGGGTCGCGACCTCAAACGGGTCGTTATCGTCGATGATAACCCGAATTCGTTTTCAAACCAACCCGACAACGCAATTCTGATAAGGCCCTTCGTGGATGATATTTTCGACCGGGAGCTTTGGAAATTGAAAAGCTTTTTTAATGAGTCGGATTGCTGTGAATGTGATGATATGAGGGATGCTGTTAAGCACTATGTCACTGTGCAGCAGCGACGTTAG

Predicted protein sequences of Glyma13g29710

Limit To All Plant Sequences

>Glyma13g29710.2   sequence type=predicted peptide   gene model=Glyma13g29710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLNSTQQHKPHHFRHSLISLSDIQRIQKMVSKVKRSPVKSIKDLRNSNNHSNRRWRRKTSIKNVVAASSAGLATIRRRITKLFFKIAHLSTSAHKKKATSYNILKKTKTTTDEHEQLDNIRRTLLFDDTTTLLPPSFSLRKTVFLDLDETLVHSHPSPPPERFDFVVRPVIGGEPMDFYVLKRPGVDEFLESLAAKYEVVVFTAALKEYASMVLDRLDRNRFISHRLYRDSCRNIDGKLVKDLNETGRDLKRVVIVDDNPNSFSNQPDNAILIRPFVDDIFDRELWKLKSFFNESDCCECDDMRDAVKHYVTVQQRR*

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